LR48_mrnaVigan03g243700

Transcript Overview
NameLR48_mrnaVigan03g243700
Unique NameLR48_mrnaVigan03g243700_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length3833
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_3-CM003373.1supercontigChr_3-CM003373.1:34321394..34325226 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR440Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR463Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR478Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR509Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL079Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR198Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0660Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0795Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0997Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1000Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1087Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1270Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR531Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR545Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR605Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0678Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0726Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0741Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0747Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR504Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR523Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR563Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR462Pisum sativum Cameor genome v1aPisum sativum
aspsR489Pisum sativum Cameor genome v1aPisum sativum
aspsR504Pisum sativum Cameor genome v1aPisum sativum
aspvR488Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR515Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR533Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR544Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR406Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR430Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR463Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR469Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR491Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR506Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR535Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR478Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR520Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR549Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR402Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR403Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR494Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR527Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR562Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR586Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR375Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR400Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR433Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR444Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR392Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR410Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR425Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR454Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg31734.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_23660Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.5g119760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_027335280.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun01g174800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_05405.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_07860.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004494141.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun11g126400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014639320.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.001G190900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat3g032360.1Pisum sativum Cameor genome v1aPisum sativum
jg7741.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_010377Cajanus cajan Asha genome v1.0Cajanus cajan
rna-KK1_022366Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.011G094700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_31131Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_00806Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Hedin2.R1.5g150400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.6g014560.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.6g019560.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_16492Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr01.1671.7.62113177Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan08g137300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan03g243700gene-LR48_Vigan03g243700_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan03g243700LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-start_codon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34325224..34325226LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-start_codon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34325224..34325226Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324789..34325226LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324789..34325226Vigna angularisexon
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324592..34324708LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324592..34324708Vigna angularisexon
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324237..34324377LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324237..34324377Vigna angularisexon
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34323914..34324087LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34323914..34324087Vigna angularisexon
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34322503..34322710LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34322503..34322710Vigna angularisexon
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34322234..34322400LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34322234..34322400Vigna angularisexon
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321671..34321756LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321671..34321756Vigna angularisexon
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321394..34321532LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-exon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321394..34321532Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324709..34324788LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324709..34324788Vigna angularisintron
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324378..34324591LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324378..34324591Vigna angularisintron
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324088..34324236LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34324088..34324236Vigna angularisintron
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34322711..34323913LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34322711..34323913Vigna angularisintron
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34322401..34322502LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34322401..34322502Vigna angularisintron
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321757..34322233LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321757..34322233Vigna angularisintron
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321533..34321670LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-intron-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321533..34321670Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS10230CDS10230_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-stop_codon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321394..34321396LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1-stop_codon-Chr_3-CM003373.1_Va_Jingnong6_v1.1-1589992784:34321394..34321396Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: HNRPQ_ARATH (Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana OX=3702 GN=LIF2 PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 7.796e-124
Identity = 203/374 (54.28%), Postives = 273/374 (72.99%), Query Frame = 1 
Query:  262 PSDVKDETGVTDTEDEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELKGKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADPRNY--ESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQK------SSGAANQQKSAILPTYPPHLXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXDGRIGYVLQQPGFQQHA 1359
            PS + DE        +++K++ LL+LPPHGSEV+IGG+P+ V EEDL   C+ +GE+  VR+MK ++SG++KGYAFV FKTK++A KAI+EL++ E KGK I+CS S+ K+RLFIGN+P+NWTE+   KV+ ++GPGV ++EL+KDP  + RNRGFAF+ YYNNACA+YSRQKM +S+FKL  NAPTV+WADP++    S+A +QVKALYVKN+P N + ++LKELF+ HG++TK+V P  K G  K  +GFVH+AERSSA+KA+K+TE+YE++GQ LE  LAKPQA++K      S GAA      + PT+         G        A  F+QP++YG G  P GM M+PMLLPDGR+GYVLQQPG    A
Sbjct:   94 PSPIDDE--------DREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF-GGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAA 456
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus OX=10116 GN=Syncrip PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.033e-46
Identity = 97/291 (33.33%), Postives = 162/291 (55.67%), Query Frame = 1 
Query:  340 PPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELK-GKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADP-RNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQK-------SSGAANQQKSAILPTYPPHL 1185
            P  G+E+++G IP+ + E++L    +  G +  +R+M    +G  +GYAFVTF TKE A +A+K  NN E++ GK I    S A +RLF+G++P++ T+E + +  S++  G+  V L   P    +NRGF F+EY ++  A  +R+++ +   K+  N  TV WADP  + +    ++VK L+V+NL   +T++ L++ F   GK+ +V        ++   Y F+HF ER  A+KA++     +++G+ +E   AKP  DQK          A NQ         PPH+
Sbjct:   68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 349
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens OX=9606 GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 6.078e-46
Identity = 97/291 (33.33%), Postives = 162/291 (55.67%), Query Frame = 1 
Query:  340 PPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELK-GKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADP-RNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQK-------SSGAANQQKSAILPTYPPHL 1185
            P  G+E+++G IP+ + E++L    +  G +  +R+M    +G  +GYAFVTF TKE A +A+K  NN E++ GK I    S A +RLF+G++P++ T+E + +  S++  G+  V L   P    +NRGF F+EY ++  A  +R+++ +   K+  N  TV WADP  + +    ++VK L+V+NL   +T++ L++ F   GK+ +V        ++   Y F+HF ER  A+KA++     +++G+ +E   AKP  DQK          A NQ         PPH+
Sbjct:  158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus OX=10090 GN=Syncrip PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 9.812e-46
Identity = 97/291 (33.33%), Postives = 162/291 (55.67%), Query Frame = 1 
Query:  340 PPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELK-GKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADP-RNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQK-------SSGAANQQKSAILPTYPPHL 1185
            P  G+E+++G IP+ + E++L    +  G +  +R+M    +G  +GYAFVTF TKE A +A+K  NN E++ GK I    S A +RLF+G++P++ T+E + +  S++  G+  V L   P    +NRGF F+EY ++  A  +R+++ +   K+  N  TV WADP  + +    ++VK L+V+NL   +T++ L++ F   GK+ +V        ++   Y F+HF ER  A+KA++     +++G+ +E   AKP  DQK          A NQ         PPH+
Sbjct:  158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 9.949e-41
Identity = 93/274 (33.94%), Postives = 160/274 (58.39%), Query Frame = 1 
Query:  340 PPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELK-GKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADP-RNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGAANQQKS 1155
            P  G+EV++G IP+ + E++L    +  G +  +R+M    SG+ +GYAF+TF  KE A +A+K  ++ E++ GK +    S A +RLF+G++P+N T+EN+ +  S++  G++ V L   P    +NRGF F+EY ++  A  +R+++ +   K+  N  TV WADP    +    ++VK L+V+NL   +T++ L++ F   GK+ +V        ++   Y FVHF +R +A+KA+      EI+G+ +E  LAKP   ++    A +Q S
Sbjct:  161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQAS 426
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: A1CF_HUMAN (APOBEC1 complementation factor OS=Homo sapiens OX=9606 GN=A1CF PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.317e-36
Identity = 86/262 (32.82%), Postives = 144/262 (54.96%), Query Frame = 1 
Query:  334 ALPPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELK-GKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADPR-NYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSR-YGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKP 1110
            A P  G E++IG +P+ + E++L   C+ +G++  +R+M    +G  +GYAFVTF  K  A  AIK+LNN E++ G+ +    S    RLF+G +P+    E +   + ++  GV+ V +        +NRGFAF+EY ++  A  +R+K+     +L  +   V WA+P    +    S VK LYV+NL  + +++ +++ F +       + P A    +K R Y FVHF+ R  A++A+K      +DG  +E +LAKP
Sbjct:   50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMM-DFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: RBM47_PONAB (RNA-binding protein 47 OS=Pongo abelii OX=9601 GN=RBM47 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.906e-36
Identity = 86/257 (33.46%), Postives = 141/257 (54.86%), Query Frame = 1 
Query:  346 HGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELK-GKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADPR-NYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKP 1110
             G EV++G IP+ V E++L    ++VG +  +R+M   + G+ +GYAFV +  K  A +A++ELNN E++ G+ +    S    RLFIG +P+    E + + ++++  GV+ V +        +NRGFAF+EY ++  A  +R+K+     +L  +   V WA+P  + +      VK LYV+NL    T+D +K+ F   G+     V   K  ++   Y FVHF  R  A+ A+ N    E++G  LE +LAKP
Sbjct:   69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: RBM47_HUMAN (RNA-binding protein 47 OS=Homo sapiens OX=9606 GN=RBM47 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.906e-36
Identity = 86/257 (33.46%), Postives = 141/257 (54.86%), Query Frame = 1 
Query:  346 HGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELK-GKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADPR-NYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKP 1110
             G EV++G IP+ V E++L    ++VG +  +R+M   + G+ +GYAFV +  K  A +A++ELNN E++ G+ +    S    RLFIG +P+    E + + ++++  GV+ V +        +NRGFAF+EY ++  A  +R+K+     +L  +   V WA+P  + +      VK LYV+NL    T+D +K+ F   G+     V   K  ++   Y FVHF  R  A+ A+ N    E++G  LE +LAKP
Sbjct:   69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: RBM47_CANLF (RNA-binding protein 47 OS=Canis lupus familiaris OX=9615 GN=RBM47 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.121e-36
Identity = 87/257 (33.85%), Postives = 143/257 (55.64%), Query Frame = 1 
Query:  346 HGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELK-GKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADPR-NYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKP 1110
             G EV++G IP+ V E++L    ++VG +  +R+M   + G+ +GYAFVT+  K  A +A++ELNN E++ G+ +    S    RLFIG +P+    E + + ++++  GV+ V +        +NRGFAF+EY ++  A  +R+K+     +L  +   V WA+P  + +      VK LYV+NL    T+D +K+ F   G+     V   K  ++   Y FVHFA R  A+ A+ +    E++G  LE +LAKP
Sbjct:   71 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKP 320
[Close]
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Match: A1CF_PONAB (APOBEC1 complementation factor OS=Pongo abelii OX=9601 GN=A1CF PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.412e-36
Identity = 86/262 (32.82%), Postives = 144/262 (54.96%), Query Frame = 1 
Query:  334 ALPPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELK-GKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADPR-NYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSR-YGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKP 1110
            A P  G E++IG +P+ + E++L   C+ +G++  +R+M    +G  +GYAFVTF  K  A  AIK+LNN E++ G+ +    S    RLF+G +P+    E +   + ++  GV+ V +        +NRGFAF+EY ++  A  +R+K+     +L  +   V WA+P    +    S VK LYV+NL  + +++ +++ F +       + P A    +K R Y FVHF+ R  A++A+K      +DG  +E +LAKP
Sbjct:   50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMM-DFNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan03g243700 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
HNRPQ_ARATH7.796e-12454.28Heterogeneous nuclear ribonucleoprotein Q OS=Arabi... [more]
HNRPQ_RAT5.033e-4633.33Heterogeneous nuclear ribonucleoprotein Q OS=Rattu... [more]
HNRPQ_HUMAN6.078e-4633.33Heterogeneous nuclear ribonucleoprotein Q OS=Homo ... [more]
HNRPQ_MOUSE9.812e-4633.33Heterogeneous nuclear ribonucleoprotein Q OS=Mus m... [more]
HNRPR_HUMAN9.949e-4133.94Heterogeneous nuclear ribonucleoprotein R OS=Homo ... [more]
A1CF_HUMAN1.317e-3632.82APOBEC1 complementation factor OS=Homo sapiens OX=... [more]
RBM47_PONAB1.906e-3633.46RNA-binding protein 47 OS=Pongo abelii OX=9601 GN=... [more]
RBM47_HUMAN1.906e-3633.46RNA-binding protein 47 OS=Homo sapiens OX=9606 GN=... [more]
RBM47_CANLF2.121e-3633.85RNA-binding protein 47 OS=Canis lupus familiaris O... [more]
A1CF_PONAB2.412e-3632.82APOBEC1 complementation factor OS=Pongo abelii OX=... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 41..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 452..489
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 461..489
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..87
NoneNo IPR availableCDDcd00590RRM_SFcoord: 120..192
e-value: 4.70256E-21
score: 84.6641
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 119..192
e-value: 3.7E-23
score: 92.9
coord: 199..276
e-value: 5.5E-10
score: 49.2
coord: 293..366
e-value: 3.1E-17
score: 73.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 200..266
e-value: 8.9E-10
score: 38.2
coord: 294..363
e-value: 1.5E-15
score: 56.7
coord: 120..190
e-value: 1.1E-18
score: 66.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 198..280
score: 12.663
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 118..196
score: 18.274
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 292..370
score: 15.409
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 293..366
e-value: 16.0
score: 1.7
coord: 119..192
e-value: 4.1E-7
score: 39.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 34..198
e-value: 2.7E-29
score: 104.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 199..279
e-value: 1.2E-19
score: 72.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 280..386
e-value: 3.7E-22
score: 80.7
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 199..282
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 115..372

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan03g243700; organism=Vigna angularis; type=mRNA; length=3833bp
ATGAAAAAAATGCCTGGGACAGGACATAAAGATGTATTGGTCAAAATTCC
AGAGTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATG
AGCAAGTAGACTTTGACGGGGAAAATGATCAAGAGGAGACAATGGAGGAA
GAAGAAGTTGAGTATGAAGAGGTAGAGGAGGAGGAAGAAGTAGAAGTGGA
AGAAGAAGAAGAGGAGGTGGAGGAGGAGGAAGGGGAGGAGGAAGAAGTAG
AAGAGACTAAGCCTTCAGATGTTAAAGATGAGACAGGAGTGACAGACACT
GAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGG
GTCCGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATT
TGAGCGTATTTTGTCAATCTGTGGGAGAAGTTTCAGCGGTTAGATACATG
AAATTCTTCTATCCTTTTTCTTTTTCTTTTTTCATGTATTTCTTCCGAAA
CTGATTAAATTTGTACAGGTTAGGATAATGAAGGGCAAAGAATCAGGTGA
AGCAAAAGGATACGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTA
AGGCTATTAAGGAGCTGAACAACACTGAACTTAAGGTATTTTGGTACAGT
AGTTGTTGCTATTTTTTTCTAATCTGTAGTTGTTATCCTGTTCATTGATT
AGGTCATCTACTTCTTTACTCCTGTTTTCTGTTTTTTTCGCTTATAATTT
AAAAAAATTCTATATCCTATCTGTTTAGCTGGCCAGTGGCCACCCTAGCC
TGTGGTACTGTGATCTGAATTAAGTGACTTCTTTTTTCTGAGTTCCCAGG
GAAAAAAAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATT
GGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGAACAAAGTTGTTTC
AGAGATTGGCCCTGGAGTCATTTCTGTGGAACTATTGAAGGTTTGGTTGA
CTTTATTTCTATTATGTCATATAGTATGATTTTAATTTGCTAACTCATGT
TTAAAGTTTGTTCTTGTCACCAAAACTATTAATTGTGATGTATAATGGGT
AATTTCTGCCTTGAATTGGCAAACTGTATCGTTGTACAGGACCCACAGGT
TTCTGGCCGTAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTT
GTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAGACTTTAAACTTGGC
AGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATC
TGCAAACTCTCAGGTGATTTAATATAAAATTAAATTTTATGAATAAATTC
ACTTTGAAGAAAAAATTATGTGTAGGCCAGTATAGCTATAATTTGTGCTG
AGATATAAATCTACATCATATTTGTTGATACGTTGCATAGCTACAGTTTA
TGTTATATAGCATAATGCAACTATTTGAATGTCTCATCTTATGAACAAGA
TATGATGTATTGAATACTATTCAAATGGCAACATGAAATAGTTCAGAAGA
TTTTCGAATAAATTCATAATAATTATAATTGATTATTTTTATTAGTTTGA
AAAGATCTATTTTATATATCTATTATACATTGGGCTCTCCTTGGCCTTGG
TTCAATCCAACAAGTATGAGTTATATAACAGCTGCAAATAGACATAAAAT
AAAATTTGATAACCATTGGTAAATTCAAAAGGCAAATATTGATAACGTCA
ACAGTGAGAGGATACAATGCAGACAAATTGAGTCTGCAATAGGACACCTC
CAATGAACACACTGAAAGAATATAACATAAAACGGTGGGGTAATTCATGC
AAAAGAAAAGCATCGAACCTAGTAATTAAATGGTGAGATGACCCTTCTGG
CCCCATAGTGTAACATTTTTCAAACTGTGTTGTTGGTGACCCTTTTATTG
CTACTACTATCTAATTGGCATTGAAGCTAAGACAAAAGTGGTTCAACTTA
TCCAATTTGTTTTTATATGCTCAATGCACACAAAACTGAAAAAAAAAACA
CTTAGATAATTTGTATTCTCCATTTTCTGTCTTCTTGGTGCAGTGTTGCT
TCATGCATCTGCATTGTGTTCTGGGCATTATATTACTAGCTGTTCAGTAA
CAGATGGTACTGTTTTTATTAAAAGGGAGATTTACAATAGGAAGAGAGAC
AAACCCTAAAAAATGTAATTAATTAATCCTAATATAATGTTATTATTCAT
CAATTAATTACTGAGTTTTTTGGTTTAAACAAGATATTAGTGAGTAAAAT
ATTTTGGGAAGACTTGAATGTGAAGACTTTCTGTCTTATTATTGAGCTGT
CGCTGGGATTAAATTTCCTGTATCTTTGGTTGTTGTGTTTCATGTTAATA
CTGTCTGCGCAACTGTTGTGAGAATGGGATTAATTTTCCTGTGGCTTTCC
TCATGAAATACTTTTTATATTTTAGTTATGCTTTATAGAGTTGTATAATT
TTAGTGCTTTTTACAGGTAAAAGCATTGTATGTAAAGAACCTTCCAGGAA
ACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATC
ACAAAAGTGGTTGTCCCTTCTGCTAAAGCTGGCCAAGAAAAGAGCAGATA
TGGTTTTGTTCACTTTGCTGAAAGATCAAGTGCCATGAAGGCATTGAAGA
ACACAGAGAAATATGAAATTGATGGTAGTTTTTTTATTAATTTATGATCC
TTTTTTTCCTAAAATATTCTTTAAAAATAGTGAACTAGACAGTTACGAAT
GTGTTGTTTTCTTTGGGGACGGACAGGACAAACATTGGAGTGTTCATTAG
CAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCAGCTAATCAACAGAAG
TCAGCTATACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGG
TGGTGCAATAGGTGCAGGATATGGTGCTGCTGGCTTTGCGCAAGTAAGTT
TCTCTATGACGGATTGGGTCTCAACTATTTAGTTTTGCAATATTTGGAAA
AGATAATTGATGTTTGGAGGTTTGGCTAGGAATTTACCTCCCACAAACAC
TGGCAAATGTGGTGTCACCTTGAGAGGTTACAGGAGTGGATTGCACTCTA
GTAATTGTATAGTTATCAAGTTTGATTATTGATGTTTTCATCATTCCAAC
ATAATTTCACTTGCAGTAAATGATCCCCAACAGTTAAATTTCTTTTTAAT
TTAGTTGATGTACTTGTGATTCACAATATATATCACCGATACATATTAAT
ACACATACCCAGTTTAACTGTATCCACTTTTTTCGCTCCTTACTTTTAGT
CAATAGTTACATTCAACAAAATGAAATGCGGTCCTCCGTAATTTTAAGCA
AAACTGCTGATACTGGTGCGTGTATGTCTCAATATGTTTCTAACCAATGT
TGATGTTCTTAAATATGCAGCCACTAATGTATGGTCCTGGACCAACCCCT
CCTGGTATGACAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATA
TGTATTGTGAGTGTCATCATGATTTATATAATTTTAGATATTCAATCCAT
CATTCAAGTTTTTCCCGCAGTGAGTAATTAACAATTTACTATTGGCAACA
TCTATATCTGAGATTTTTGCTTTTATCCATGGTGGTACATATAGACAACA
ACCAGGGTTTCAACAGCATGCCCCGGTGCTGGAATCCCAACATAGGAGGA
GGGGCAGCGGTAGTTCAAGTGGTGGGAAACGTAGTAATGATAATAACAGC
AATAGTGGGCGTGGCCGATATCATCCCTACTAA
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protein sequence of LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1

>LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=489bp
MKKMPGTGHKDVLVKIPESPEGNSEPEKPTDSDEQVDFDGENDQEETMEE
EEVEYEEVEEEEEVEVEEEEEEVEEEEGEEEEVEETKPSDVKDETGVTDT
EDEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIM
KGKESGEAKGYAFVTFKTKELASKAIKELNNTELKGKKIKCSTSQAKHRL
FIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYN
NACAEYSRQKMSNSDFKLGSNAPTVSWADPRNYESSANSQVKALYVKNLP
GNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKAL
KNTEKYEIDGQTLECSLAKPQADQKSSGAANQQKSAILPTYPPHLGYGMV
GGAIGAGYGAAGFAQPLMYGPGPTPPGMTMMPMLLPDGRIGYVLQQPGFQ
QHAPVLESQHRRRGSGSSSGGKRSNDNNSNSGRGRYHPY
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mRNA from alignment at Chr_3-CM003373.1:34321394..34325226-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan03g243700; organism=Vigna angularis; type=mRNA; length=3833bp; location=Sequence derived from: Chr_3-CM003373.1:34321394..34325226- (Vigna angularis
ATGAAAAAAATGCCTGGGACAGGACATAAAGATGTATTGGTCAAAATTCC
AGAGTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATG
AGCAAGTAGACTTTGACGGGGAAAATGATCAAGAGGAGACAATGGAGGAA
GAAGAAGTTGAGTATGAAGAGGTAGAGGAGGAGGAAGAAGTAGAAGTGGA
AGAAGAAGAAGAGGAGGTGGAGGAGGAGGAAGGGGAGGAGGAAGAAGTAG
AAGAGACTAAGCCTTCAGATGTTAAAGATGAGACAGGAGTGACAGACACT
GAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGG
GTCCGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATT
TGAGCGTATTTTGTCAATCTGTGGGAGAAGTTTCAGCGGTTAGATACATG
AAATTCTTCTATCCTTTTTCTTTTTCTTTTTTCATGTATTTCTTCCGAAA
CTGATTAAATTTGTACAGGTTAGGATAATGAAGGGCAAAGAATCAGGTGA
AGCAAAAGGATACGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTA
AGGCTATTAAGGAGCTGAACAACACTGAACTTAAGGTATTTTGGTACAGT
AGTTGTTGCTATTTTTTTCTAATCTGTAGTTGTTATCCTGTTCATTGATT
AGGTCATCTACTTCTTTACTCCTGTTTTCTGTTTTTTTCGCTTATAATTT
AAAAAAATTCTATATCCTATCTGTTTAGCTGGCCAGTGGCCACCCTAGCC
TGTGGTACTGTGATCTGAATTAAGTGACTTCTTTTTTCTGAGTTCCCAGG
GAAAAAAAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATT
GGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGAACAAAGTTGTTTC
AGAGATTGGCCCTGGAGTCATTTCTGTGGAACTATTGAAGGTTTGGTTGA
CTTTATTTCTATTATGTCATATAGTATGATTTTAATTTGCTAACTCATGT
TTAAAGTTTGTTCTTGTCACCAAAACTATTAATTGTGATGTATAATGGGT
AATTTCTGCCTTGAATTGGCAAACTGTATCGTTGTACAGGACCCACAGGT
TTCTGGCCGTAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTT
GTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAGACTTTAAACTTGGC
AGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATC
TGCAAACTCTCAGGTGATTTAATATAAAATTAAATTTTATGAATAAATTC
ACTTTGAAGAAAAAATTATGTGTAGGCCAGTATAGCTATAATTTGTGCTG
AGATATAAATCTACATCATATTTGTTGATACGTTGCATAGCTACAGTTTA
TGTTATATAGCATAATGCAACTATTTGAATGTCTCATCTTATGAACAAGA
TATGATGTATTGAATACTATTCAAATGGCAACATGAAATAGTTCAGAAGA
TTTTCGAATAAATTCATAATAATTATAATTGATTATTTTTATTAGTTTGA
AAAGATCTATTTTATATATCTATTATACATTGGGCTCTCCTTGGCCTTGG
TTCAATCCAACAAGTATGAGTTATATAACAGCTGCAAATAGACATAAAAT
AAAATTTGATAACCATTGGTAAATTCAAAAGGCAAATATTGATAACGTCA
ACAGTGAGAGGATACAATGCAGACAAATTGAGTCTGCAATAGGACACCTC
CAATGAACACACTGAAAGAATATAACATAAAACGGTGGGGTAATTCATGC
AAAAGAAAAGCATCGAACCTAGTAATTAAATGGTGAGATGACCCTTCTGG
CCCCATAGTGTAACATTTTTCAAACTGTGTTGTTGGTGACCCTTTTATTG
CTACTACTATCTAATTGGCATTGAAGCTAAGACAAAAGTGGTTCAACTTA
TCCAATTTGTTTTTATATGCTCAATGCACACAAAACTGAAAAAAAAAACA
CTTAGATAATTTGTATTCTCCATTTTCTGTCTTCTTGGTGCAGTGTTGCT
TCATGCATCTGCATTGTGTTCTGGGCATTATATTACTAGCTGTTCAGTAA
CAGATGGTACTGTTTTTATTAAAAGGGAGATTTACAATAGGAAGAGAGAC
AAACCCTAAAAAATGTAATTAATTAATCCTAATATAATGTTATTATTCAT
CAATTAATTACTGAGTTTTTTGGTTTAAACAAGATATTAGTGAGTAAAAT
ATTTTGGGAAGACTTGAATGTGAAGACTTTCTGTCTTATTATTGAGCTGT
CGCTGGGATTAAATTTCCTGTATCTTTGGTTGTTGTGTTTCATGTTAATA
CTGTCTGCGCAACTGTTGTGAGAATGGGATTAATTTTCCTGTGGCTTTCC
TCATGAAATACTTTTTATATTTTAGTTATGCTTTATAGAGTTGTATAATT
TTAGTGCTTTTTACAGGTAAAAGCATTGTATGTAAAGAACCTTCCAGGAA
ACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATC
ACAAAAGTGGTTGTCCCTTCTGCTAAAGCTGGCCAAGAAAAGAGCAGATA
TGGTTTTGTTCACTTTGCTGAAAGATCAAGTGCCATGAAGGCATTGAAGA
ACACAGAGAAATATGAAATTGATGGTAGTTTTTTTATTAATTTATGATCC
TTTTTTTCCTAAAATATTCTTTAAAAATAGTGAACTAGACAGTTACGAAT
GTGTTGTTTTCTTTGGGGACGGACAGGACAAACATTGGAGTGTTCATTAG
CAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCAGCTAATCAACAGAAG
TCAGCTATACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGG
TGGTGCAATAGGTGCAGGATATGGTGCTGCTGGCTTTGCGCAAGTAAGTT
TCTCTATGACGGATTGGGTCTCAACTATTTAGTTTTGCAATATTTGGAAA
AGATAATTGATGTTTGGAGGTTTGGCTAGGAATTTACCTCCCACAAACAC
TGGCAAATGTGGTGTCACCTTGAGAGGTTACAGGAGTGGATTGCACTCTA
GTAATTGTATAGTTATCAAGTTTGATTATTGATGTTTTCATCATTCCAAC
ATAATTTCACTTGCAGTAAATGATCCCCAACAGTTAAATTTCTTTTTAAT
TTAGTTGATGTACTTGTGATTCACAATATATATCACCGATACATATTAAT
ACACATACCCAGTTTAACTGTATCCACTTTTTTCGCTCCTTACTTTTAGT
CAATAGTTACATTCAACAAAATGAAATGCGGTCCTCCGTAATTTTAAGCA
AAACTGCTGATACTGGTGCGTGTATGTCTCAATATGTTTCTAACCAATGT
TGATGTTCTTAAATATGCAGCCACTAATGTATGGTCCTGGACCAACCCCT
CCTGGTATGACAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATA
TGTATTGTGAGTGTCATCATGATTTATATAATTTTAGATATTCAATCCAT
CATTCAAGTTTTTCCCGCAGTGAGTAATTAACAATTTACTATTGGCAACA
TCTATATCTGAGATTTTTGCTTTTATCCATGGTGGTACATATAGACAACA
ACCAGGGTTTCAACAGCATGCCCCGGTGCTGGAATCCCAACATAGGAGGA
GGGGCAGCGGTAGTTCAAGTGGTGGGAAACGTAGTAATGATAATAACAGC
AATAGTGGGCGTGGCCGATATCATCCCTACTAA
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Coding sequence (CDS) from alignment at Chr_3-CM003373.1:34321394..34325226-

>LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan03g243700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan03g243700; organism=Vigna angularis; type=CDS; length=1470bp; location=Sequence derived from: Chr_3-CM003373.1:34321394..34325226- (Vigna angularis
ATGAAAAAAATGCCTGGGACAGGACATAAAGATGTATTGGTCAAAATTCC
AGAGTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATG
AGCAAGTAGACTTTGACGGGGAAAATGATCAAGAGGAGACAATGGAGGAA
GAAGAAGTTGAGTATGAAGAGGTAGAGGAGGAGGAAGAAGTAGAAGTGGA
AGAAGAAGAAGAGGAGGTGGAGGAGGAGGAAGGGGAGGAGGAAGAAGTAG
AAGAGACTAAGCCTTCAGATGTTAAAGATGAGACAGGAGTGACAGACACT
GAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGG
GTCCGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATT
TGAGCGTATTTTGTCAATCTGTGGGAGAAGTTTCAGCGGTTAGGATAATG
AAGGGCAAAGAATCAGGTGAAGCAAAAGGATACGCTTTTGTGACCTTCAA
GACAAAGGAATTGGCATCTAAGGCTATTAAGGAGCTGAACAACACTGAAC
TTAAGGGAAAAAAAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTG
TTCATTGGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGAACAAAGT
TGTTTCAGAGATTGGCCCTGGAGTCATTTCTGTGGAACTATTGAAGGACC
CACAGGTTTCTGGCCGTAACCGGGGATTTGCTTTTATTGAGTATTACAAC
AATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAGACTTTAA
ACTTGGCAGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATG
AATCATCTGCAAACTCTCAGGTAAAAGCATTGTATGTAAAGAACCTTCCA
GGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAA
AATCACAAAAGTGGTTGTCCCTTCTGCTAAAGCTGGCCAAGAAAAGAGCA
GATATGGTTTTGTTCACTTTGCTGAAAGATCAAGTGCCATGAAGGCATTG
AAGAACACAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCATT
AGCAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCAGCTAATCAACAGA
AGTCAGCTATACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTT
GGTGGTGCAATAGGTGCAGGATATGGTGCTGCTGGCTTTGCGCAACCACT
AATGTATGGTCCTGGACCAACCCCTCCTGGTATGACAATGATGCCGATGC
TTTTACCTGATGGAAGGATTGGATATGTATTACAACAACCAGGGTTTCAA
CAGCATGCCCCGGTGCTGGAATCCCAACATAGGAGGAGGGGCAGCGGTAG
TTCAAGTGGTGGGAAACGTAGTAATGATAATAACAGCAATAGTGGGCGTG
GCCGATATCATCCCTACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR003954RRM_dom_euk
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding