LR48_mrnaVigan11g029500
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan11g029500 vs. DB:Swiss
Match: EBP1_SOLTU (ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum OX=4113 GN=EBP1 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.463e-29 Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 1 Query: 49 RKIEKGVACPTCISVNNVVCHFSPLDNDESVL-KGDILK--KATHIDGFISSVAHTHVLQEGPITGRXXXXXXXXXXXXXXXLRLVRPGKK 312 +KIE+GVA PTCISVNN VCHFSPL +DE+V+ +GDILK HIDGFI+ V HTHVL EGP+TGRA DVIAA NTAAEVALRLVRPGKK Sbjct: 70 KKIERGVAFPTCISVNNTVCHFSPLASDETVVEEGDILKIDMGCHIDGFIAVVGHTHVLHEGPVTGRAADVIAATNTAAEVALRLVRPGKK 160
BLAST of LR48_mrnaVigan11g029500 vs. DB:Swiss
Match: EBP1_ARATH (ERBB-3 BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=EBP1 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.564e-27 Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 1 Query: 49 RKIEKGVACPTCISVNNVVCHFSPLDNDESVLK-GDILK--KATHIDGFISSVAHTHVLQEGPITGRXXXXXXXXXXXXXXXLRLVRPGKK 312 +KIE+GVA PTCISVNN V HFSPL +DESVL+ GD++K HIDGFI+ V HTHVLQEGP++GR DVIAAANTAA+VALRLVRPGKK Sbjct: 71 KKIERGVAFPTCISVNNTVGHFSPLASDESVLEDGDMVKIDMGCHIDGFIALVGHTHVLQEGPLSGRKADVIAAANTAADVALRLVRPGKK 161
BLAST of LR48_mrnaVigan11g029500 vs. DB:Swiss
Match: PA2G4_RAT (Proliferation-associated protein 2G4 OS=Rattus norvegicus OX=10116 GN=Pa2g4 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.661e-17 Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 37 FAFSRKIEKGVACPTCISVNNVVCHFSPLDNDESVL--KGDILK--KATHIDGFISSVAHTHVL---QEGPITGRXXXXXXXXXXXXXXXLRLVRPGKK 312 F ++++KG+A PT ISVNN VCHFSPL +D+ + +GD++K H+DGFI++VAHT V+ Q +TGR DVI AA+ AE ALRLV+PG + Sbjct: 64 FKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGSQVTGRKADVIKAAHLCAEAALRLVKPGNQ 162
BLAST of LR48_mrnaVigan11g029500 vs. DB:Swiss
Match: PA2G4_MOUSE (Proliferation-associated protein 2G4 OS=Mus musculus OX=10090 GN=Pa2g4 PE=1 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 2.902e-17 Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 37 FAFSRKIEKGVACPTCISVNNVVCHFSPLDNDESVL--KGDILK--KATHIDGFISSVAHTHVL---QEGPITGRXXXXXXXXXXXXXXXLRLVRPGKK 312 F ++++KG+A PT ISVNN VCHFSPL +D+ + +GD++K H+DGFI++VAHT V+ Q +TGR DVI AA+ AE ALRLV+PG + Sbjct: 64 FKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQ 162
BLAST of LR48_mrnaVigan11g029500 vs. DB:Swiss
Match: PA2G4_HUMAN (Proliferation-associated protein 2G4 OS=Homo sapiens OX=9606 GN=PA2G4 PE=1 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 3.369e-17 Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 37 FAFSRKIEKGVACPTCISVNNVVCHFSPLDNDESVL--KGDILK--KATHIDGFISSVAHTHVL---QEGPITGRXXXXXXXXXXXXXXXLRLVRPGKK 312 F ++++KG+A PT ISVNN VCHFSPL +D+ + +GD++K H+DGFI++VAHT V+ Q +TGR DVI AA+ AE ALRLV+PG + Sbjct: 64 FKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQ 162
BLAST of LR48_mrnaVigan11g029500 vs. DB:Swiss
Match: PRLA_DICDI (Proliferation-associated protein A OS=Dictyostelium discoideum OX=44689 GN=prlA PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.432e-13 Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1 Query: 37 FAFSRKIEKGVACPTCISVNNVVCHFSPLDNDESVLK-GDILK--KATHIDGFISSVAHTHVL---QEGPITGRXXXXXXXXXXXXXXXLRLVRPGK 309 F + +EKG+A PTC+SVNN V HFSPL + LK GD++K HIDG+I+ AHT ++ +TG+ D I AA+ A E ALR++RPGK Sbjct: 71 FTKRKNLEKGIAFPTCVSVNNCVGHFSPLKGNTRTLKQGDVVKIDLGCHIDGYIAVGAHTIIIGNTSAESMTGKVADAICAAHYALEAALRMIRPGK 167
BLAST of LR48_mrnaVigan11g029500 vs. DB:Swiss
Match: CDB4_SCHPO (Curved DNA-binding protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cdb4 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 5.195e-9 Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 Query: 61 KGVACPTCISVNNVVCHFSPLDNDE----SVLKGDILK--KATHIDGFISSVAHTHVLQEGPITGRXXXXXXXXXXXXXXXLRLVRPG 306 KG+A PT +S N++ H SPL +D ++ GD++K HIDGF S VA T V+ E P+TG A DVIAAA+ A + A R ++PG Sbjct: 75 KGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPG 162 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan11g029500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 7
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g029500; organism=Vigna angularis; type=mRNA; length=2281bpback to top protein sequence of LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1 >LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=109bpback to top mRNA from alignment at Chr_11-CM003381.1:3510104..3512384- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g029500; organism=Vigna angularis; type=mRNA; length=2281bp; location=Sequence derived from: Chr_11-CM003381.1:3510104..3512384- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_11-CM003381.1:3510104..3512384- >LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g029500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g029500; organism=Vigna angularis; type=CDS; length=330bp; location=Sequence derived from: Chr_11-CM003381.1:3510104..3512384- (Vigna angularisback to top |