LR48_mrnaVigan10g092100
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL6_ARATH (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2) HSP 1 Score: 229.95 bits (585), Expect = 8.681e-71 Identity = 152/329 (46.20%), Postives = 193/329 (58.66%), Query Frame = 1 Query: 88 QSTTNNQNESY-YNRFSPSMXXXXXXXXXXXFLMGFFSIYIRHCADSPSASIRNLTGATSRQR-----RGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQSEAQPEAHNDAVXXXXXXXXXXKLPISSEP-PQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLVQPGEDTERYTLRLPEEVRKQLLLNPELHRARSLVMLPXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSDRWVFTMAPPFLVRASSVRSPRVANNG 1053 QS N+ Y Y R SP+MA+I+VILIAA+F MGFFSIY RHC+ P A + GA SR RGLD +V++TFPT YS VK KLGKG LECA+CLNEFED ETLRL+PKCDHVFHP CID WL +H TCPVCRANL + + P P+ Q PE P+ + P P+ L ++ +R + +F RSH+TGHS+VQPGE TER+TLRLPE+VRK+++ + +L+R SL++LPR GSSRRG + +SDRW+F P FL R+ S R+ G Sbjct: 30 QSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGESVEPGGTEPDLELQQVVVNPE------------------PVVTAPVPEQLVTSEVDSRRLPGVPVDLKRVKFSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPRGGSSRRGKPIDRSRA------------RSDRWLFRKTPSFLWRSRDDGSIRLGATG 328
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL31_ARATH (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2) HSP 1 Score: 209.534 bits (532), Expect = 2.796e-63 Identity = 133/318 (41.82%), Postives = 174/318 (54.72%), Query Frame = 1 Query: 115 SYYNRFSPSMXXXXXXXXXXXFLMGFFSIYIRHCADSPSASIRNLTGATSRQR-----RGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQSEAQPEAHNDAVXXXXXXXXXXKLPISSEPPQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLVQPGEDTERYTLRLPEEVRKQLLLNPELHRARSLVMLPXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSDRWVFTMAPPFLVRASSVRSPRVANNG 1053 +Y SP+MA+++V++IAA+F MGFF++YIRHC + S+ GA R RGLD I+TFPT YS VK K+GKG LECA+CLNEFED ETLRL+PKCDHVFHP CI WL H TCPVCR NL + + P + D+EAQ ++ AV + K P RSH+TGHS+V PGE T+R+TLR+PEE+RK+++ N +L+R+ S+ +LPR GSSR G + + KSDRW+F P FL R S R+ G Sbjct: 36 AYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPE-----PEVVVETDLEAQQQS-------AVPVPVVELPRVKFP--------------------------------RSHTTGHSVVLPGESTDRFTLRVPEELRKKIMANWKLNRSNSVFVLPRGGSSRSGKQVDRSRA------------KSDRWLFRKTPSFLWRNRDDGSIRLGGTG 297
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL11_ARATH (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 1.239e-47 Identity = 106/268 (39.55%), Postives = 147/268 (54.85%), Query Frame = 1 Query: 124 NRFSPSMXXXXXXXXXXXFLMGFFSIYIRHCADSPSA-------SIRNLTGATSRQRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGI--------PVLNAPNDIEAQSEAQPEAHNDAVXXXXXXXXXXKLPISSEPPQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLVQPGEDTERYTLRLPEEVRKQLLLNPELHRARSLVMLP 882 +RF P+MAI++++L++ F +GFFS+YIR C + N +Q RGLD ++I+TFPT +YS VK ++GK LEC+VCLNEFED ETLRLIPKC HVFHP CID WL SHTTCP+CRA+L+P PG+S+ I P + PN +S P+A +L S L NQ++ R + + HS E+ +R+TLRLP+++ + L+NP L + V LP Sbjct: 57 SRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGSDPNGDRIRSLGSPDA---------------RLIES----VALTCNQSMPRRSMSTGWNLAGMFTNSDRTGQHS-----ENLDRFTLRLPQDIHNK-LVNPNLSKVH--VALP 297
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3) HSP 1 Score: 160.999 bits (406), Expect = 4.319e-45 Identity = 94/240 (39.17%), Postives = 126/240 (52.50%), Query Frame = 1 Query: 178 FLMGFFSIYIRHCA----DSPSASIRNLTGATSRQRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVP---EPGDSVRGIPVLNAPNDIEAQSEAQPEAHNDAVXXXXXXXXXXKLPISSEPPQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLVQPGEDTERYTLRLPEEVRKQLLL--NPELHRARSL 870 FL G S+YIRHCA DS + RN S +R GLD AV+++FP YS VK K+G LECA+CLNE ED ET+RL+P C+H+FH +CID WL SH TCPVCR+NL +PGD G+P+ + + E VE + IS + P+ S+STGHS+ + + TER+TLRLP++V+ +L+ L R RS Sbjct: 58 FLTGLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPLAAMRDHVVVDIE--------TVEVAKSHHRRLSSEISGKFPR--------------------------SNSTGHSMDRFSDGTERFTLRLPDDVKMRLMAVKGRRLKRTRSF 263
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL36_ARATH (Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 6.035e-40 Identity = 93/209 (44.50%), Postives = 124/209 (59.33%), Query Frame = 1 Query: 262 SRQRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQS-EAQPEAHNDAVXXXXXXXXXXKLPISSEPPQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLVQP-GEDTERYTLRLPEEVRKQLLLNPELHRARSLVMLP 882 SR RRGL++ VI++FPT YS VK K+GKG +ECA+CL+EFED ETLR +P C H FH CID WL+S +TCPVCRANL +PG+S P LN D+E + P + + + + L S ++ PRSHSTGHSLVQ GE+ +R+TL+LPEEV++Q L++ L R RS ++LP Sbjct: 89 SRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGESY---PYLNM--DVETGGVQKLPNERSLTGNSVTTRSRSTGLLSSWRMAEIF---------------------VPRSHSTGHSLVQQLGENLDRFTLQLPEEVQRQ-LVSLNLIR-RSHIVLP 269
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL15_ARATH (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 6.265e-40 Identity = 103/252 (40.87%), Postives = 130/252 (51.59%), Query Frame = 1 Query: 130 FSPSMXXXXXXXXXXXFLMGFFSIYIRHCAD-----SPSASIRNLTGATSRQRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRG-IPVLNAPNDIEAQSEAQPEAHNDAVXXXXXXXXXXKLPISSEPPQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLV----------QPGEDTERYTLRLPEEVRKQLL 837 FSP+ AII+++L++ F +G S+Y+R C N GLD +VI+TFPT YS VK ++GK LEC VCLNEFED ETLRLIP+C HVFHP CID WL S TTCP+CRANLVP PG+SV IP L A+ N + PI +V L R + +G +S STG L QP E+ +RYTLRLP+E+ QL+ Sbjct: 35 FSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIPGL-----------ARETGQNS-----------LRTPIDDNRKRV--LTSPDERLIDSVAWTGNQSMPRKSMSTGWKLAELYSPASSPGQPEENLDRYTLRLPQEIHDQLV 262
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL9_ARATH (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 5.492e-39 Identity = 97/247 (39.27%), Postives = 123/247 (49.80%), Query Frame = 1 Query: 178 FLMGFFSIYIRHC----------------ADSPSASIRNLTGATSRQRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLV-PEPGDSVRGIPVLNAPNDIEAQSEAQPE---------AH-NDAVXXXXXXXXXXKLPISSEPPQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLVQPGEDTERYTLRLPEEVRKQLL 837 F M F SI+ R A+S IR LT RGLD I+TFPT YS VK ++GKG +ECAVCL EFED ETLRL+P C HVFH +C+D WL+ H+TCP+CRA+LV + GD + + S PE AH DAV Q+ G+ FPRSHSTGHSL+QP + +R+TLRLP++VR+QL+ Sbjct: 63 FFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTA------RGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDDDSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDAVTWSNSNITPRSKSTGLSSWQITGI------------------LFPRSHSTGHSLIQPAGNLDRFTLRLPDDVRRQLM 285
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL34_ARATH (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 2.176e-38 Identity = 92/208 (44.23%), Postives = 122/208 (58.65%), Query Frame = 1 Query: 259 TSRQRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQSEAQPEAHNDAVXXXXXXXXXXKLPISSE-----PPQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLVQPGEDTERYTLRLPEEVRKQLLLNPELHRARS 867 T R RGL + VI++FP+ YS VK K+GKG +ECA+CLNEFED ETLRL+P C H FH CID WL+S +TCPVCRA+L P+PG + P+D + A +V P+ + +L S+ PP+ +R+ + FPRSHSTGHSLV E+ +R+TL+LPEEVR+QL L +ARS Sbjct: 93 TRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFIRPHDNQDMDLENVTARR-SVLESPDVRLLDRLSWSNNTGANTPPR--------SRSTGLSNWRITELLFPRSHSTGHSLVPRVENLDRFTLQLPEEVRRQLSHMKTLPQARS 291
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL37_ARATH (Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana OX=3702 GN=ATL37 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.748e-37 Identity = 82/201 (40.80%), Postives = 111/201 (55.22%), Query Frame = 1 Query: 262 SRQRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSV----RGIPVLNAPNDIEAQSEAQPEAH-----NDAVXXXXXXXXXXKLPISSEPPQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLVQPGEDTERYTLRLPEEVRKQLL 837 SR RRG+D+ VI++FP YS VK K+G G +ECA+CL EFED E LR +P C H FH CIDEWL+S +TCPVCRANL + GDS + NA ++ + + N+ + + L S P++ PRSHSTGHSLVQP ++ +R+TL+LPEEV++QL+ Sbjct: 86 SRVRRGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDSFPHPSMDVETGNAQRGVQESPDERSLTGSSVTCNNNANYTTPRSRSTGLLSSWHVPELF---------------------LPRSHSTGHSLVQPCQNIDRFTLQLPEEVQRQLV 265
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Match: ATL38_ARATH (RING-H2 finger protein ATL38 OS=Arabidopsis thaliana OX=3702 GN=ATL38 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.069e-36 Identity = 79/187 (42.25%), Postives = 108/187 (57.75%), Query Frame = 1 Query: 274 RGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQSEAQPEAHNDAVXXXXXXXXXXKLPISSEPPQVLGLNQTLXXXXXXXXXXXXXXXXXXSHSTGHSLVQPGEDTERYTLRLPEEVRKQL 834 RGLD+A+I++FPT YS VK ++G G +ECAVC+ EFED ETLRL+P+C HVFH +C+ WL+ H+TCP+CR +L +PG+ LN D+ E+ D V + +V +Q L RSHSTGHS+VQP ++ +R+TLRLPEEVR+QL Sbjct: 66 RGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGER----SYLNPEPDL---VESTNSHLFDGVTWTNRNRPSRSWSTRLSQCRV---SQIL---------------ISRSHSTGHSVVQPLDNLDRFTLRLPEEVRRQL 227 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g092100 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g092100; organism=Vigna angularis; type=mRNA; length=1113bpback to top protein sequence of LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1 >LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=370bpback to top mRNA from alignment at Chr_10-CM003380.1:11282719..11283831- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g092100; organism=Vigna angularis; type=mRNA; length=1113bp; location=Sequence derived from: Chr_10-CM003380.1:11282719..11283831- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_10-CM003380.1:11282719..11283831- >LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g092100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g092100; organism=Vigna angularis; type=CDS; length=1113bp; location=Sequence derived from: Chr_10-CM003380.1:11282719..11283831- (Vigna angularisback to top |