LR48_mrnaVigan09g019900

Transcript Overview
NameLR48_mrnaVigan09g019900
Unique NameLR48_mrnaVigan09g019900_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length390
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_9-CM003379.1supercontigChr_9-CM003379.1:2587758..2588147 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR186Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR194Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR231Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL005Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR110Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0092Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0416Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0541Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0820Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0971Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1060Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR265Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR308Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0370Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0380Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR201Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR230Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR281Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR208Pisum sativum Cameor genome v1aPisum sativum
aspsR233Pisum sativum Cameor genome v1aPisum sativum
aspvR175Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR255Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR198Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR203Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR208Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR216Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR227Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR213Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR220Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR157Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR158Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR220Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR241Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR259Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR142Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR183Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR195Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR173Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR181Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014646223.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_12393Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun09g241500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_019162Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.009G061900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr09.1344Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan09g019900gene-LR48_Vigan09g019900_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g019900LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2587758..2587760LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2587758..2587760Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2587758..2588147LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2587758..2588147Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2587758..2588147LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2587758..2588147Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2588145..2588147LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2588145..2588147Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g019900 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012595PetM of cytochrome b6/f complex subunit 7PFAMPF08041PetMcoord: 93..120
e-value: 2.6E-10
score: 39.6
IPR012595PetM of cytochrome b6/f complex subunit 7HAMAPMF_00396Cytb6_f_PetMcoord: 91..122
score: 12.964
NoneNo IPR availableSUPERFAMILY103441PetM subunit of the cytochrome b6f complexcoord: 92..124

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g019900; organism=Vigna angularis; type=mRNA; length=390bp
ATGGCAATGGCAACAGCTGTCGTATGTCCTCAGAACATCACCGGCGGAGC
CGTCGTCAGCTCACCTGCCAAGACCAAGAAGAGAATGAACAGAGTGGTAC
ACATAAGAGGCCTTAATTCATTTGGGGGACTCAAGGCTAGCAATGATGTT
GTGGCCTTGGGGCTTCCCTTGAGCACTGAGAAGGGTTTCGCCAAGATTAT
GAGCTCGGTGAAAGCAACAGCATCCAATGGAAAAGGAAAGGGAGGAGGGG
CGCTTTCATCCACTTGCAATGCCGCCGGTGAGATATTCACAATTGCTGCT
ATCATCAATGGCCTTGTTCTTGTGGGGGTTGCTGTTGGCTTTGTGCTCCT
GCGAGTTGAAGCGTGGGTGGAGGAGTCTGAGGCAGAGTGA
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protein sequence of LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=129bp
MAMATAVVCPQNITGGAVVSSPAKTKKRMNRVVHIRGLNSFGGLKASNDV
VALGLPLSTEKGFAKIMSSVKATASNGKGKGGGALSSTCNAAGEIFTIAA
IINGLVLVGVAVGFVLLRVEAWVEESEAE
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mRNA from alignment at Chr_9-CM003379.1:2587758..2588147+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g019900; organism=Vigna angularis; type=mRNA; length=390bp; location=Sequence derived from: Chr_9-CM003379.1:2587758..2588147+ (Vigna angularis
ATGGCAATGGCAACAGCTGTCGTATGTCCTCAGAACATCACCGGCGGAGC
CGTCGTCAGCTCACCTGCCAAGACCAAGAAGAGAATGAACAGAGTGGTAC
ACATAAGAGGCCTTAATTCATTTGGGGGACTCAAGGCTAGCAATGATGTT
GTGGCCTTGGGGCTTCCCTTGAGCACTGAGAAGGGTTTCGCCAAGATTAT
GAGCTCGGTGAAAGCAACAGCATCCAATGGAAAAGGAAAGGGAGGAGGGG
CGCTTTCATCCACTTGCAATGCCGCCGGTGAGATATTCACAATTGCTGCT
ATCATCAATGGCCTTGTTCTTGTGGGGGTTGCTGTTGGCTTTGTGCTCCT
GCGAGTTGAAGCGTGGGTGGAGGAGTCTGAGGCAGAGTGA
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Coding sequence (CDS) from alignment at Chr_9-CM003379.1:2587758..2588147+

>LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g019900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g019900; organism=Vigna angularis; type=CDS; length=390bp; location=Sequence derived from: Chr_9-CM003379.1:2587758..2588147+ (Vigna angularis
ATGGCAATGGCAACAGCTGTCGTATGTCCTCAGAACATCACCGGCGGAGC
CGTCGTCAGCTCACCTGCCAAGACCAAGAAGAGAATGAACAGAGTGGTAC
ACATAAGAGGCCTTAATTCATTTGGGGGACTCAAGGCTAGCAATGATGTT
GTGGCCTTGGGGCTTCCCTTGAGCACTGAGAAGGGTTTCGCCAAGATTAT
GAGCTCGGTGAAAGCAACAGCATCCAATGGAAAAGGAAAGGGAGGAGGGG
CGCTTTCATCCACTTGCAATGCCGCCGGTGAGATATTCACAATTGCTGCT
ATCATCAATGGCCTTGTTCTTGTGGGGGTTGCTGTTGGCTTTGTGCTCCT
GCGAGTTGAAGCGTGGGTGGAGGAGTCTGAGGCAGAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012595PetM_cyt_b6/f_cplx_su7
Vocabulary: Cellular Component
TermDefinition
GO:0009512cytochrome b6f complex