LR48_mrnaVigan09g029200

Transcript Overview
NameLR48_mrnaVigan09g029200
Unique NameLR48_mrnaVigan09g029200_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length309
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_9-CM003379.1supercontigChr_9-CM003379.1:3312056..3312364 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR186Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR201Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR205Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR213Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR224Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR231Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL010Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasL074Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR106Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR110Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR113Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0092Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0307Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0416Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0540Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0598Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0819Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0822Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0971Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1060Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR252Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR273Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR309Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0293Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0374Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR223Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR249Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR272Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR281Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR191Pisum sativum Cameor genome v1aPisum sativum
aspsR203Pisum sativum Cameor genome v1aPisum sativum
aspsR216Pisum sativum Cameor genome v1aPisum sativum
aspsR219Pisum sativum Cameor genome v1aPisum sativum
aspsR232Pisum sativum Cameor genome v1aPisum sativum
aspvR175Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR187Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR200Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR251Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR139Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR142Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR157Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR198Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR203Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR204Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR188Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR198Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR217Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR226Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR191Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR200Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR221Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR232Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR148Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR157Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR164Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR174Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR185Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR206Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR238Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR241Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR251Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR133Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR136Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR142Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR183Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR195Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR173Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR188Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR194Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR200Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR214Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vigun09g250900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr09.1261Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan09g029200gene-LR48_Vigan09g029200_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g029200LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3312056..3312058LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3312056..3312058Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3312056..3312364LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3312056..3312364Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3312056..3312364LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3312056..3312364Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3312362..3312364LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3312362..3312364Vigna angularisstop_codon


Homology
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RM06_MARPO (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL6 PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 7.201e-44
Identity = 64/93 (68.82%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
            MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N+ICCTG+D Q+V QFAA V++CKPPEVYKGKGI Y +E+I
Sbjct:    1 MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGMDHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEII 93          
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_LACSS (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=rplF PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.766e-23
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDE 273
            F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  I  +GI KQ+V QFAA +R  +PPE YKGKGI Y DE
Sbjct:   82 FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQKVGQFAAEIRDVRPPEPYKGKGIRYTDE 166          
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rplF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.816e-23
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
            F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNVI  +GIDK+ V   AA +R  +PPE YKGKGI YV E +
Sbjct:   83 FERRLELVGVGY--RASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKELVGNTAARIRAVRPPEPYKGKGIRYVGEQV 169          
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RK6_SPIOL (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.377e-23
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 1
Query:   13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
            F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  V QFAAT+R+ +PPE YKGKG+ YVDEV+
Sbjct:  123 FEKKLQLVGVGYRATVE--GKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVRYVDEVV 209          
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_SPHAL (50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) OX=317655 GN=rplF PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.466e-23
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
            F + L+I GVGY  RA A G+ L L+LGYSH+V+ AVP  + +    N  I  +GIDKQ+V Q AA +R  + PE YKGKGI Y  E I
Sbjct:   83 FTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEISGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYI 169          
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_BEII9 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) OX=395963 GN=rplF PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.262e-22
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
            F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K   +  TGIDKQRV Q AA +R  +PPE YKGKG+ Y  E I
Sbjct:   83 FERKLEITGVGYKAAVQ--GKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQRVGQIAAEIRALRPPEPYKGKGVKYAGEFI 169          
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_ERYLH (50S ribosomal protein L6 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=rplF PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.229e-22
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
            F + L+I GVGY  RA+A G+ L L+LGYSH+V++AVP  + V       +  +GIDKQ V Q AA +R  + PE YKGKGI Y  E +
Sbjct:   83 FSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVKTPDQTTVIISGIDKQAVGQLAAEIRQWRKPEPYKGKGIKYQGEYV 169          
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_FERNB (50S ribosomal protein L6 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rplF PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.918e-22
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
            F + L+IVGVGY  RA+  G  L + LGY+H+VE  VP  V+V     N I  +GIDKQRV Q AA +R  + P  Y GKGI YVDEV+
Sbjct:   90 FKKELEIVGVGY--RAQLQGNKLIMNLGYAHQVEFDVPADVKVEVPAPNKIIVSGIDKQRVGQVAADIRKWREPNPYSGKGIKYVDEVL 176          
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_THEAB (50S ribosomal protein L6 OS=Thermosipho africanus (strain TCF52B) OX=484019 GN=rplF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.187e-22
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
            F + L+IVG+GY  RA+  G+ L + LGY+H VE+ +P  V+V     N I  +GIDKQRV Q AA +R  + P VY GKGI YV EV+
Sbjct:   90 FKKELEIVGIGY--RAQLQGKKLVMNLGYAHPVEMEIPSDVKVEVPSPNKIIVSGIDKQRVGQVAADIRKWREPNVYSGKGIRYVGEVV 176          
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_NITWN (50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplF PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.197e-22
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
            F + L+I+GVGY  RA   G+ L L LGYSH+V  AVP  + +   K   I  TG D QRV Q AA +R  +PPE YKGKG+ Y DE I
Sbjct:   83 FEKKLEIIGVGY--RAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADETI 169          
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
RM06_MARPO7.201e-4468.8260S ribosomal protein L6, mitochondrial OS=Marchan... [more]
RL6_LACSS3.766e-2350.5750S ribosomal protein L6 OS=Lactobacillus sakei su... [more]
RL6_SYNJA4.816e-2350.5650S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RK6_SPIOL5.377e-2349.4450S ribosomal protein L6, chloroplastic OS=Spinaci... [more]
RL6_SPHAL8.466e-2350.5650S ribosomal protein L6 OS=Sphingopyxis alaskensi... [more]
RL6_BEII92.262e-2248.3150S ribosomal protein L6 OS=Beijerinckia indica su... [more]
RL6_ERYLH4.229e-2248.3150S ribosomal protein L6 OS=Erythrobacter litorali... [more]
RL6_FERNB4.918e-2251.6950S ribosomal protein L6 OS=Fervidobacterium nodos... [more]
RL6_THEAB9.187e-2249.4450S ribosomal protein L6 OS=Thermosipho africanus ... [more]
RL6_NITWN9.197e-2250.5650S ribosomal protein L6 OS=Nitrobacter winogradsk... [more]
back to top
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 23..39
score: 44.97
coord: 65..86
score: 55.87
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 12..88
e-value: 8.8E-18
score: 64.7
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 5..102
e-value: 1.3E-34
score: 120.1
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 5..100
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 78..86

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g029200; organism=Vigna angularis; type=mRNA; length=309bp
ATGGAGGCCAAATTTTTTCGCTTTCTCAAGATTGTGGGTGTTGGATACAA
AGCCAGAGCTGAAGCTGCAGGTCGTCTATTGTATCTCAAATTGGGGTACA
GCCATGAGGTGGAATTAGCTGTCCCTCCTGCTGTCCGAGTTTTTTGCTTC
AAGAACAATGTAATTTGCTGTACAGGAATTGACAAACAAAGAGTGCACCA
GTTTGCAGCCACTGTTCGGACCTGTAAGCCTCCTGAAGTTTACAAAGGCA
AGGGTATAATGTATGTTGATGAAGTTATCAAGAAAAAACAAGGAAAGAAG
TCTAAATAG
back to top

protein sequence of LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=102bp
MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCF
KNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKK
SK
back to top

mRNA from alignment at Chr_9-CM003379.1:3312056..3312364+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g029200; organism=Vigna angularis; type=mRNA; length=309bp; location=Sequence derived from: Chr_9-CM003379.1:3312056..3312364+ (Vigna angularis
ATGGAGGCCAAATTTTTTCGCTTTCTCAAGATTGTGGGTGTTGGATACAA AGCCAGAGCTGAAGCTGCAGGTCGTCTATTGTATCTCAAATTGGGGTACA GCCATGAGGTGGAATTAGCTGTCCCTCCTGCTGTCCGAGTTTTTTGCTTC AAGAACAATGTAATTTGCTGTACAGGAATTGACAAACAAAGAGTGCACCA GTTTGCAGCCACTGTTCGGACCTGTAAGCCTCCTGAAGTTTACAAAGGCA AGGGTATAATGTATGTTGATGAAGTTATCAAGAAAAAACAAGGAAAGAAG TCTAAATAG
back to top

Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3312056..3312364+

>LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g029200; organism=Vigna angularis; type=CDS; length=309bp; location=Sequence derived from: Chr_9-CM003379.1:3312056..3312364+ (Vigna angularis
ATGGAGGCCAAATTTTTTCGCTTTCTCAAGATTGTGGGTGTTGGATACAA
AGCCAGAGCTGAAGCTGCAGGTCGTCTATTGTATCTCAAATTGGGGTACA
GCCATGAGGTGGAATTAGCTGTCCCTCCTGCTGTCCGAGTTTTTTGCTTC
AAGAACAATGTAATTTGCTGTACAGGAATTGACAAACAAAGAGTGCACCA
GTTTGCAGCCACTGTTCGGACCTGTAAGCCTCCTGAAGTTTACAAAGGCA
AGGGTATAATGTATGTTGATGAAGTTATCAAGAAAAAACAAGGAAAGAAG
TCTAAATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR019906Ribosomal_uL6_bac-type
IPR020040Ribosomal_uL6_a/b-dom
IPR036789Ribosomal_uL6-like_a/b-dom_sf
IPR002358Ribosomal_L6_CS
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome