LR48_mrnaVigan09g029200
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RM06_MARPO (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL6 PE=3 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 7.201e-44 Identity = 64/93 (68.82%), Postives = 77/93 (82.80%), Query Frame = 1 Query: 1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
MEAKFF FL+I+GVGYKA A G +LYLKLG+SHE+ L V P+VRVFC K N+ICCTG+D Q+V QFAA V++CKPPEVYKGKGI Y +E+I
Sbjct: 1 MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGMDHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEII 93
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_LACSS (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=rplF PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.766e-23 Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1 Query: 13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDE 273
F + L ++GVGY RA+ G+ L L +GYSH VE+ P V V N I +GI KQ+V QFAA +R +PPE YKGKGI Y DE
Sbjct: 82 FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQKVGQFAAEIRDVRPPEPYKGKGIRYTDE 166
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rplF PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 4.816e-23 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
F R L++VGVGY RA G L L +GYSH VE+ PP +++ NNVI +GIDK+ V AA +R +PPE YKGKGI YV E +
Sbjct: 83 FERRLELVGVGY--RASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKELVGNTAARIRAVRPPEPYKGKGIRYVGEQV 169
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RK6_SPIOL (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.377e-23 Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 1 Query: 13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
F + L++VGVGY+A E G+ L L LG+SH V +A+P ++V +N + +G DK V QFAAT+R+ +PPE YKGKG+ YVDEV+
Sbjct: 123 FEKKLQLVGVGYRATVE--GKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVRYVDEVV 209
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_SPHAL (50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) OX=317655 GN=rplF PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.466e-23 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
F + L+I GVGY RA A G+ L L+LGYSH+V+ AVP + + N I +GIDKQ+V Q AA +R + PE YKGKGI Y E I
Sbjct: 83 FTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEISGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYI 169
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_BEII9 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) OX=395963 GN=rplF PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.262e-22 Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1 Query: 13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
F R L+I GVGYKA + G+ L L LGYSH++ +P + + K + TGIDKQRV Q AA +R +PPE YKGKG+ Y E I
Sbjct: 83 FERKLEITGVGYKAAVQ--GKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQRVGQIAAEIRALRPPEPYKGKGVKYAGEFI 169
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_ERYLH (50S ribosomal protein L6 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=rplF PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.229e-22 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
F + L+I GVGY RA+A G+ L L+LGYSH+V++AVP + V + +GIDKQ V Q AA +R + PE YKGKGI Y E +
Sbjct: 83 FSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVKTPDQTTVIISGIDKQAVGQLAAEIRQWRKPEPYKGKGIKYQGEYV 169
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_FERNB (50S ribosomal protein L6 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rplF PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.918e-22 Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
F + L+IVGVGY RA+ G L + LGY+H+VE VP V+V N I +GIDKQRV Q AA +R + P Y GKGI YVDEV+
Sbjct: 90 FKKELEIVGVGY--RAQLQGNKLIMNLGYAHQVEFDVPADVKVEVPAPNKIIVSGIDKQRVGQVAADIRKWREPNPYSGKGIKYVDEVL 176
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_THEAB (50S ribosomal protein L6 OS=Thermosipho africanus (strain TCF52B) OX=484019 GN=rplF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 9.187e-22 Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1 Query: 13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
F + L+IVG+GY RA+ G+ L + LGY+H VE+ +P V+V N I +GIDKQRV Q AA +R + P VY GKGI YV EV+
Sbjct: 90 FKKELEIVGIGY--RAQLQGKKLVMNLGYAHPVEMEIPSDVKVEVPSPNKIIVSGIDKQRVGQVAADIRKWREPNVYSGKGIRYVGEVV 176
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Match: RL6_NITWN (50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplF PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.197e-22 Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 1 Query: 13 FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 279
F + L+I+GVGY RA G+ L L LGYSH+V AVP + + K I TG D QRV Q AA +R +PPE YKGKG+ Y DE I
Sbjct: 83 FEKKLEIIGVGY--RAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADETI 169 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g029200 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g029200; organism=Vigna angularis; type=mRNA; length=309bpback to top protein sequence of LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1 >LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=102bpback to top mRNA from alignment at Chr_9-CM003379.1:3312056..3312364+ Legend: polypeptidestart_codonexonCDSstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g029200; organism=Vigna angularis; type=mRNA; length=309bp; location=Sequence derived from: Chr_9-CM003379.1:3312056..3312364+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3312056..3312364+ >LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g029200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g029200; organism=Vigna angularis; type=CDS; length=309bp; location=Sequence derived from: Chr_9-CM003379.1:3312056..3312364+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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