LR48_mrnaVigan09g030100
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan09g030100 vs. DB:Swiss
Match: IQD32_ARATH (Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana OX=3702 GN=IQD32 PE=1 SV=3) HSP 1 Score: 184.496 bits (467), Expect = 3.224e-47 Identity = 154/430 (35.81%), Postives = 224/430 (52.09%), Query Frame = 1 Query: 1171 SEFYSLHKGPEIAPSSEHSSVHGEPEITPPPEHTSFYQKPEIDSEQNKRSVKRFASEQLESEGKKTVNGSKKVSNPAFIAAQSKFEELSSIANSGRTNNLSYQDSAVESQGDTSSVGNDSAYKSKEFAFENPALYLSRLAGSDCGTELSISSTLDSPDISEPGIMENERDAKDL---VEGIGNLENTINRDDEANVSSAIPASNVATSVLDQSEVVDDISGNLGPSVVAVDSGEPAISNIEKNASDLQREPAEAGLQDLRSSPEASPRSHLTVPESQGTPSSQVS--VQTKENKANKNRSGNKRRSLPLSNKSPSTPNQDSGSRGSREQLPKDQQNGKRRTSFGSVKPDDIDQEPRDNNTSNNSVPHFMQATESAKAKINANNSPRSSPDVHERD-VEVKKRLSLPGAA-GRQGSPRIQRSTSKAQQTAK 2439
+E S + PE + + S+ +P P S ++PE Q K S+KR KVSNP+FIAAQSKFEEL+S S + LS +D + +G T D+ K+ + E+ + + L+GS+CGTELS++S+LD+ +E + DA+ VE ++T D + + + +V D E V++ + ++ EP IS + S +R E+G Q S A + +T+ ESQ TP+SQ S V+ ++ K+ K+ S KR+ +S K S+P Q+ G+ + EQ +Q RRTSFG DQE R+++ NS+P FMQ T+SAKAK+ +NSPRSSPD+ ERD V KKR SLPG G+Q SPRIQRS S+AQQ K
Sbjct: 407 TEKMSQYDSPEASAEVYYDSIQSQPLAAKP---DSLLEEPEYVDGQIKHSLKR------------------KVSNPSFIAAQSKFEELTSSTGSNKAMTLSSKDDVLGEEGKTDIDSPDTTNTIKDHSLED--VTPAELSGSECGTELSVTSSLDT--------LEKKSDAEGAEPRVEAKLLEDDTFKTDQAELIEIDVKDATSMGTVEDPKEKVENAKDEVE---ISATHHEPVISTPD---SKKRRAEDESGPQAYALSEGA--LTPMTITESQATPASQASSSVKARKGKSEKSGSSQKRK---VSKKITSSPKQEIGTGEATEQEEGKEQKSGRRTSFG------YDQEARESSGGKNSLPRFMQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNGKQVSPRIQRSASQAQQGTK 788 HSP 2 Score: 171.785 bits (434), Expect = 4.914e-43 Identity = 82/157 (52.23%), Postives = 107/157 (68.15%), Query Frame = 1 Query: 337 ETERKVDVNPPESDVIVIQAAIRGLLAQRELLQRKKVVKLQAAIRGHLVRRHALGTLRCAQSIIKMQVLVRTRRAQQSHLENHLIHKDGEKDSSEILGNENLMTKSNVNYTSIEKLLSNRFASQLLESTPKNKPIHVKCDPSKADSAWKWLERWMSI 807
E++ KVD ES ++VIQAA+RG LA+RELL+ KKV+KLQAA+RGHLVR A+G+LRC Q+I+KMQ +VR R + KD S + + KS N + +KLL N+FA L+ESTPK KPI++KCDP+K SAW WLERWMS+
Sbjct: 204 ESDEKVDEKLDESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMVRARHST--------------KDGSRVSATSD---KSEPNAAA-QKLLENKFAKHLMESTPKTKPINIKCDPTKPSSAWNWLERWMSV 342 HSP 3 Score: 63.929 bits (154), Expect = 4.692e-9 Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 1 Query: 1 MGKS--TSCFKLITC-GGDAADKDDYHQVSEIKESNDKRGWSFRKKSARHRVLSNTVIAE-APSSTNKESAECTNFNFQPLSEPNVVEKVYTTNCSDEK 285
MG+S +SC +LI+C GGD D E K S DKRGWSFRKKS + R L +V++E P+S +E+ E NV EK + DEK
Sbjct: 1 MGRSPASSCLRLISCSGGDDTSADPNSTALENKSSGDKRGWSFRKKSGKQRGLITSVVSETTPASRTRETLESALLKSPSPDNNNVSEKQQQSFSVDEK 99
BLAST of LR48_mrnaVigan09g030100 vs. DB:Swiss
Match: IQD31_ARATH (Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana OX=3702 GN=IQD31 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 7.076e-19 Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 1 Query: 388 IQAAIRGLLAQRELLQRKKVVKLQAAIRGHLVRRHALGTLRCAQSIIKMQVLVRTRRAQQSHLENHLIHKDGEKDSSEILGNENLMTKSNVNYTSIEKLLSNRFASQLLESTPKNKPIHVKCDPSKADSAWKWLERW 798
+QAA RG LA+R K +++LQA IRGHLVRR A+ TL I+++Q R R ++S + + K ++L L ++ Y I+KL +N FA +LL S+PK P+H D S +S WLE W
Sbjct: 119 VQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGREIRKSDIGVQVYR----KCRLQLLQGNKLANPTDA-YLGIKKLTANAFAQKLLASSPKVLPVHA-YDTSNPNSNLIWLENW 249
BLAST of LR48_mrnaVigan09g030100 vs. DB:Swiss
Match: IQD1_ARATH (Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana OX=3702 GN=IQD1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 9.061e-11 Identity = 52/166 (31.33%), Postives = 81/166 (48.80%), Query Frame = 1 Query: 370 ESDVIVIQAAIRGLLAQRELLQRKKVVKLQAAIRGHLVRRHALGTLRCAQSIIKMQVLVRTRRAQQSHLENHLIHKDGEKDSSEILGNENLMTKSNVNYTS-------------------IEKLLSNRFASQL-LESTPKN-KPIHVKCDPSKADSAWKWLERWMS 804
E+ I+IQ+ RG LA+RE + +L+ + G +V+R A TL+C Q++ ++Q +R+RR + S EN HK + ++ LG L N NY++ E+ L+ F Q L+S K P+ + DPS W WLERWM+
Sbjct: 108 EAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRRIRMSE-ENQARHKQLLQKHAKELGG--LKNGGNWNYSNQSKEQVEAGMLHKYEATMRRERALAYAFTHQQNLKSFSKTANPMFM--DPSNPTWGWSWLERWMA 268 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g030100 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030100; organism=Vigna angularis; type=mRNA; length=4736bpback to top protein sequence of LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1 >LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=824bpback to top mRNA from alignment at Chr_9-CM003379.1:3416218..3420953+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030100; organism=Vigna angularis; type=mRNA; length=4736bp; location=Sequence derived from: Chr_9-CM003379.1:3416218..3420953+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3416218..3420953+ >LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030100_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030100; organism=Vigna angularis; type=CDS; length=2475bp; location=Sequence derived from: Chr_9-CM003379.1:3416218..3420953+ (Vigna angularisback to top |