LR48_mrnaVigan09g031500
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan09g031500 vs. DB:Swiss
Match: Y1572_ARATH (WEB family protein At1g75720 OS=Arabidopsis thaliana OX=3702 GN=At1g75720 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 9.043e-35 Identity = 94/211 (44.55%), Postives = 125/211 (59.24%), Query Frame = 1
Query: 31 RKAEIDTRPPFRSVKEAVSLFGDKVLAGEVYATANKLKKMESGGSENGLEYSRIENVEAELEETRENLQRAKEESMVMAHCLSSLQEELERTKEELQQLKQRETEKHPVESEIEDVKFVENL--TTFGVKSLRFDEEKM------EFQKKRYVTFANPPSVSHMMFPQQGVGKLERHPSL--------RKKKKSLIPL-IGAIFSRKKGTQ 612
++AEIDT PFR+VKEAV+LFG++VLA +VY+ N LK M E+ ++ EL+ETR +L+RAKEES+ M + LS L+EELERTK+ELQ+L+ V+ + + K E + T F V R D+E + +KRYV FANP + +F LERHPS+ KKKKSLIPL IG IFS+KK Q
Sbjct: 6 KRAEIDTTAPFRTVKEAVALFGERVLASQVYS--NHLKVMHDEKWEDP------SGIKIELQETRYDLKRAKEESIQMRNSLSCLKEELERTKQELQKLR--------VDPGVNETKLDETVFKTKFEVLVPRVDDEPIRSPRLRSMSEKRYVKFANPTGNNGSVF-------LERHPSMKKKEKKTKDKKKKSLIPLFIGGIFSKKKVLQ 193
BLAST of LR48_mrnaVigan09g031500 vs. DB:Swiss
Match: Y3122_ARATH (WEB family protein At3g51220 OS=Arabidopsis thaliana OX=3702 GN=At3g51220 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.611e-26 Identity = 74/206 (35.92%), Postives = 119/206 (57.77%), Query Frame = 1
Query: 34 KAEIDTRPPFRSVKEAVSLFGDKVLAGEVYATANKLKKMESGGSENGLEYSRIENVEAELEETRENLQRAKEESMVMAHCLSSLQEELERTKEELQQLKQRETEKHP-VESEIEDVKFVENLTT------FGVKSLRFDEEKM---EFQKKRYVTFANPPSVSHMMFPQQGVGKLERHPSLRKKK----KSLIPLIGAIFSRKKGT 609
+AEI+T PFRSVKEAV+LFG+++L G+ Y + +E S ++++ EL E +ENL++A+EE+ V++ + SL +ELE TKE+L R +HP VE +D+KF+E T +K RFD ++ +K+R V FANPP ++ ++ VGK E++ + KK+ K L+PL +F+R + +
Sbjct: 3 RAEIETGAPFRSVKEAVTLFGERILLGDNYISK-------------SVERSSCKSIQDELVEAKENLKKAEEENKVLSQLIESLTQELETTKEKLNH-SLRNFPEHPQVE---DDLKFIEESTVNEPDNITEIKMNRFDRNEVYGDRLEKRRSVKFANPPLLTKVI-----VGKEEKNQVMVKKQTKKMKPLVPLAAWLFARNRSS 186
BLAST of LR48_mrnaVigan09g031500 vs. DB:Swiss
Match: Y2794_ARATH (WEB family protein At2g17940 OS=Arabidopsis thaliana OX=3702 GN=At2g17940 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.160e-20 Identity = 68/199 (34.17%), Postives = 113/199 (56.78%), Query Frame = 1
Query: 34 KAEIDTRPPFRSVKEAVSLFGDKVLAGEVYAT-ANKLKKMESGGSENGLEYSRIENVEAELEETRENLQRAKEESMVMAHCLSSLQEELERTKEELQQLKQRETEK--HPVESEIEDVKFVENLTTFGVKSL-RFDEEKMEFQKKRYVTFANPPSVSHMMFPQQGVG----------KLERHPSLRKK--KKSLIPLIG 582
+AEI+T+ F SVKEAV++FG+KVLAGE+YAT +++ E+ + + L SR+ ++ ELE+T++ L R + + +++ + +L +ELE K+E+Q+L + + + +P EIE++KFVE T E +K+R VTFA+ P ++ +M VG ER S++K KK P +G
Sbjct: 11 RAEIETKAAFGSVKEAVAMFGEKVLAGEIYATRLREIRTKETNSTPSSL--SRLPSLTLELEQTKQTLTRTLQLNTSLSNRIKTLTQELELGKKEIQRLSRTRSSRLDNP---EIEELKFVEQHQTMTSNDFEEEVVTTEELEKRRLVTFASSPLLTRVM---SSVGDEEERNKKEKDFERDCSVKKTKLKKGFAPFMG 201 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g031500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 3
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031500; organism=Vigna angularis; type=mRNA; length=1270bpback to top protein sequence of LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1 >LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=207bpback to top mRNA from alignment at Chr_9-CM003379.1:3534829..3536098- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031500; organism=Vigna angularis; type=mRNA; length=1270bp; location=Sequence derived from: Chr_9-CM003379.1:3534829..3536098- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3534829..3536098- >LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g031500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g031500; organism=Vigna angularis; type=CDS; length=624bp; location=Sequence derived from: Chr_9-CM003379.1:3534829..3536098- (Vigna angularisback to top |