LR48_mrnaVigan09g032500

Transcript Overview
NameLR48_mrnaVigan09g032500
Unique NameLR48_mrnaVigan09g032500_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length327
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_9-CM003379.1supercontigChr_9-CM003379.1:3616417..3616743 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR186Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR201Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR224Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR231Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL010Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR118Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR121Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0307Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0416Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0540Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0598Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0819Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1152Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1217Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR255Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR275Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR309Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0372Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0377Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR226Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR249Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR283Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR219Pisum sativum Cameor genome v1aPisum sativum
aspsR221Pisum sativum Cameor genome v1aPisum sativum
aspsR232Pisum sativum Cameor genome v1aPisum sativum
aspvR174Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR175Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR187Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR251Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR142Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR157Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR198Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR203Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR198Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR217Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR226Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR200Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR221Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR232Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR157Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR164Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR185Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR206Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR238Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR241Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR251Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR136Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR183Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR195Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR173Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR188Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR214Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.3g193480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_12343Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.2g167600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.001G005300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004499228.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.009G017800.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg55965.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014648775.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun09g254200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_23017Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_17676Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014645285.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_04883Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004500877.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Hedin2.R1.2g207160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_12716.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg35039.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat6g002280.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr09.1235Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.3g238280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun08g006400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g278000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan09g032500gene-LR48_Vigan09g032500_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g032500LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3616417..3616419LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3616417..3616419Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3616417..3616743LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3616417..3616743Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3616417..3616743LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3616417..3616743Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3616741..3616743LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:3616741..3616743Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g032500 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g032500; organism=Vigna angularis; type=mRNA; length=327bp
ATGGCCATATCTGATGTGGTGGCGCGGAACCTCACCACCATCTTCCTTGC
GCTAATGGCCTCTTTTGAGGCCTACGGATTTATCTGCGGCCACAGCTTCA
ACGGCGCTTATCTCCTCGTCGTCTCCACCGCCGCTGTCATTCTCATCCTC
CTCACCACGCTCACGTGGGACGTATCGCGCAAAGCAACCTGCGCCTTTCA
CCGCGACCAGCGTGACAGCCGGGAGGTGTGCAAGGGAGGTATCTGCTGGC
ACGGCGTGGCGCCCCGATCGCCAGCTTCTCAGGTCCGTTTCAGACTCCCT
CGCCAGCTTCCCTTAGCCCCTTTGTGA
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protein sequence of LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=108bp
MAISDVVARNLTTIFLALMASFEAYGFICGHSFNGAYLLVVSTAAVILIL
LTTLTWDVSRKATCAFHRDQRDSREVCKGGICWHGVAPRSPASQVRFRLP
RQLPLAPL
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mRNA from alignment at Chr_9-CM003379.1:3616417..3616743+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g032500; organism=Vigna angularis; type=mRNA; length=327bp; location=Sequence derived from: Chr_9-CM003379.1:3616417..3616743+ (Vigna angularis
ATGGCCATATCTGATGTGGTGGCGCGGAACCTCACCACCATCTTCCTTGC
GCTAATGGCCTCTTTTGAGGCCTACGGATTTATCTGCGGCCACAGCTTCA
ACGGCGCTTATCTCCTCGTCGTCTCCACCGCCGCTGTCATTCTCATCCTC
CTCACCACGCTCACGTGGGACGTATCGCGCAAAGCAACCTGCGCCTTTCA
CCGCGACCAGCGTGACAGCCGGGAGGTGTGCAAGGGAGGTATCTGCTGGC
ACGGCGTGGCGCCCCGATCGCCAGCTTCTCAGGTCCGTTTCAGACTCCCT
CGCCAGCTTCCCTTAGCCCCTTTGTGA
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Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3616417..3616743+

>LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g032500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g032500; organism=Vigna angularis; type=CDS; length=327bp; location=Sequence derived from: Chr_9-CM003379.1:3616417..3616743+ (Vigna angularis
ATGGCCATATCTGATGTGGTGGCGCGGAACCTCACCACCATCTTCCTTGC
GCTAATGGCCTCTTTTGAGGCCTACGGATTTATCTGCGGCCACAGCTTCA
ACGGCGCTTATCTCCTCGTCGTCTCCACCGCCGCTGTCATTCTCATCCTC
CTCACCACGCTCACGTGGGACGTATCGCGCAAAGCAACCTGCGCCTTTCA
CCGCGACCAGCGTGACAGCCGGGAGGTGTGCAAGGGAGGTATCTGCTGGC
ACGGCGTGGCGCCCCGATCGCCAGCTTCTCAGGTCCGTTTCAGACTCCCT
CGCCAGCTTCCCTTAGCCCCTTTGTGA
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