LR48_mrnaVigan09g197000

Transcript Overview


Name	LR48_mrnaVigan09g197000
Unique Name	LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1
Type	mRNA
Organism	Vigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length	594
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_9-CM003379.1	supercontig	Chr_9-CM003379.1:24688925..24689518 +	Vigna angularis Jingnong 6 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna angularis Jingnong 6 genome v1.1	2020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.1	2020-05-21
BLAST: V. angularis Jingnong 6 genome v1.1	2020-05-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
asasL003	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasL0242	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0484	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0644	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0902	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascaiR211	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
asccR0268	Cajanus cajan Asha genome v1.0	Cajanus cajan
asccR0319	Cajanus cajan Asha genome v1.0	Cajanus cajan
ascrR194	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ascrR286	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
aspsR177	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR205	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR206	Pisum sativum Cameor genome v1a	Pisum sativum
aspvR192	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
aspvR222	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
asvuR155	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
asvuR173	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
astifR182	Vicia faba cv. Tiffany genome v1.0	Vicia faba
astifR225	Vicia faba cv. Tiffany genome v1.0	Vicia faba
asvfhR184	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvfhR210	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvfhR233	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvrvR136	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvrvR180	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvssR183	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR225	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR228	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvuaR140	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
asvuaR167	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ascanR139	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ascanR211	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Phvul.006G143400.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-TanjilR_27179	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Ca_02214.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Psat1g176480.1	Pisum sativum Cameor genome v1a	Pisum sativum
Vigun06g155200.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-KK1_017232	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vfaba.Tiffany.R1.1g366520.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
rna-XM_014662491.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
jg39114.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Cr_02638.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LR48_Vigan09g197000	gene-LR48_Vigan09g197000_Va_Jingnong6_v1.1	Vigna angularis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g197000	LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-protein	Vigna angularis	polypeptide
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1	LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1	Vigna angularis	polypeptide

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24688927	LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24688927	Vigna angularis	start_codon

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24689518	LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24689518	Vigna angularis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24689518	LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24689518	Vigna angularis	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24689516..24689518	LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24689516..24689518	Vigna angularis	stop_codon

Homology

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BLAST of LR48_mrnaVigan09g197000 vs. DB:Swiss
Match: BAG5_ARATH (BAG family molecular chaperone regulator 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BAG5 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.952e-63
Identity = 95/159 (59.75%), Postives = 124/159 (77.99%), Query Frame = 1

Query:  160 YRAHRIRALYRKIAAVDSEADRLQRLIQRQDTVDAVRTDHLEKLRMNEALMALLLKLDSVPGIDPTVRDARRKVTHRIVGLQEILDSVSESQIDESGWWSMKN----------------WDEVLADMEESICRERGGDEMERFCAQNLGFRCLQRFLRE 588
            YR++RIR LY+KI++++ EA+R+Q +IQRQ+TVDA+R+D  E+LRMNE LMALLLKLDSVPG+DPT+R+ARRKV+ +IVG+QEILDS+SE++ DE  WW+  +                W+E +   EE +CRERGG+EMERFCAQ LGFRC QRFLRE
Sbjct:   61 YRSYRIRNLYKKISSINREANRVQSIIQRQETVDAIRSDEKERLRMNETLMALLLKLDSVPGLDPTIREARRKVSRKIVGMQEILDSISETK-DEIQWWNYNDLGGVDSGQGGGAWPLYWEEAV---EEEMCRERGGEEMERFCAQYLGFRCFQRFLRE 215

The following BLAST results are available for this feature:

BLAST of LR48_mrnaVigan09g197000 vs. DB:Swiss

BLAST of LR48_mrnaVigan09g197000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
BAG5_ARATH	8.952e-63	59.75	BAG family molecular chaperone regulator 5, mitoch...	[more]

InterPro

Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..45
IPR003103	BAG domain	SMART	SM00264	BAG_1	coord: 65..142 e-value: 9.2E-15 score: 65.0
IPR003103	BAG domain	PFAM	PF02179	BAG	coord: 67..140 e-value: 1.2E-11 score: 44.8
IPR003103	BAG domain	PROSITE	PS51035	BAG	coord: 65..142 score: 12.912
IPR036533	BAG domain superfamily	GENE3D	1.20.58.120		coord: 43..145 e-value: 7.4E-10 score: 40.8
IPR036533	BAG domain superfamily	SUPERFAMILY	63491	BAG domain	coord: 57..143
IPR000048	IQ motif, EF-hand binding site	PROSITE	PS50096	IQ	coord: 44..72 score: 7.968

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_9-CM003379.1:24688925..24689518+
coding sequence from alignment at Chr_9-CM003379.1:24688925..24689518+

mRNA sequence

>LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197000; organism=Vigna angularis; type=mRNA; length=594bp
ATGAAACCCTCTTCCAAATCAGGTTCCTTCTCCTCCTACTCAACTTCCAC
CACGCTCACCTACACCTACCACTATGACCACACTCCACCCCCACGCGCCA
ATTCCACTCCTCAACCATCCCCCTCCCCCTCCGCCGCCGCAGCCACCATC
CAATCTGCCTACCGCGCCCACCGCATTCGGGCCCTCTACCGGAAAATAGC
TGCGGTCGACTCCGAAGCCGACCGGCTGCAGCGCCTGATCCAGCGACAGG
ACACGGTGGACGCCGTGCGCACCGACCATCTGGAGAAGCTCAGAATGAAC
GAGGCGCTCATGGCCCTGCTGCTGAAGCTGGACTCTGTGCCCGGCATTGA
TCCGACGGTCAGGGATGCGCGAAGGAAAGTCACCCATCGGATCGTGGGCC
TCCAGGAGATACTGGACTCTGTATCGGAGAGCCAGATTGATGAGTCCGGC
TGGTGGTCCATGAAGAATTGGGACGAAGTATTGGCCGACATGGAAGAAAG
TATTTGTCGCGAAAGAGGCGGTGATGAAATGGAACGGTTTTGCGCTCAAA
ATCTTGGCTTTCGCTGCCTACAGAGGTTTCTTCGTGAACCTTGA

protein sequence of LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=197bp
MKPSSKSGSFSSYSTSTTLTYTYHYDHTPPPRANSTPQPSPSPSAAAATI
QSAYRAHRIRALYRKIAAVDSEADRLQRLIQRQDTVDAVRTDHLEKLRMN
EALMALLLKLDSVPGIDPTVRDARRKVTHRIVGLQEILDSVSESQIDESG
WWSMKNWDEVLADMEESICRERGGDEMERFCAQNLGFRCLQRFLREP

mRNA from alignment at Chr_9-CM003379.1:24688925..24689518+

Legend: polypeptidestart_codonexonCDSstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197000; organism=Vigna angularis; type=mRNA; length=594bp; location=Sequence derived from: Chr_9-CM003379.1:24688925..24689518+ (Vigna angularis
ATGAAACCCTCTTCCAAATCAGGTTCCTTCTCCTCCTACTCAACTTCCAC
CACGCTCACCTACACCTACCACTATGACCACACTCCACCCCCACGCGCCA
ATTCCACTCCTCAACCATCCCCCTCCCCCTCCGCCGCCGCAGCCACCATC
CAATCTGCCTACCGCGCCCACCGCATTCGGGCCCTCTACCGGAAAATAGC
TGCGGTCGACTCCGAAGCCGACCGGCTGCAGCGCCTGATCCAGCGACAGG
ACACGGTGGACGCCGTGCGCACCGACCATCTGGAGAAGCTCAGAATGAAC
GAGGCGCTCATGGCCCTGCTGCTGAAGCTGGACTCTGTGCCCGGCATTGA
TCCGACGGTCAGGGATGCGCGAAGGAAAGTCACCCATCGGATCGTGGGCC
TCCAGGAGATACTGGACTCTGTATCGGAGAGCCAGATTGATGAGTCCGGC
TGGTGGTCCATGAAGAATTGGGACGAAGTATTGGCCGACATGGAAGAAAG
TATTTGTCGCGAAAGAGGCGGTGATGAAATGGAACGGTTTTGCGCTCAAA
ATCTTGGCTTTCGCTGCCTACAGAGGTTTCTTCGTGAACCTTGA

Coding sequence (CDS) from alignment at Chr_9-CM003379.1:24688925..24689518+

>LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197000; organism=Vigna angularis; type=CDS; length=594bp; location=Sequence derived from: Chr_9-CM003379.1:24688925..24689518+ (Vigna angularis
ATGAAACCCTCTTCCAAATCAGGTTCCTTCTCCTCCTACTCAACTTCCAC
CACGCTCACCTACACCTACCACTATGACCACACTCCACCCCCACGCGCCA
ATTCCACTCCTCAACCATCCCCCTCCCCCTCCGCCGCCGCAGCCACCATC
CAATCTGCCTACCGCGCCCACCGCATTCGGGCCCTCTACCGGAAAATAGC
TGCGGTCGACTCCGAAGCCGACCGGCTGCAGCGCCTGATCCAGCGACAGG
ACACGGTGGACGCCGTGCGCACCGACCATCTGGAGAAGCTCAGAATGAAC
GAGGCGCTCATGGCCCTGCTGCTGAAGCTGGACTCTGTGCCCGGCATTGA
TCCGACGGTCAGGGATGCGCGAAGGAAAGTCACCCATCGGATCGTGGGCC
TCCAGGAGATACTGGACTCTGTATCGGAGAGCCAGATTGATGAGTCCGGC
TGGTGGTCCATGAAGAATTGGGACGAAGTATTGGCCGACATGGAAGAAAG
TATTTGTCGCGAAAGAGGCGGTGATGAAATGGAACGGTTTTGCGCTCAAA
ATCTTGGCTTTCGCTGCCTACAGAGGTTTCTTCGTGAACCTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003103	BAG_domain
IPR036533	BAG_dom_sf
IPR000048	IQ_motif_EF-hand-BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0051087	protein-folding chaperone binding
GO:0005515	protein binding

Search form

LR48_mrnaVigan09g197000