LR48_mrnaVigan09g197000

Transcript Overview
NameLR48_mrnaVigan09g197000
Unique NameLR48_mrnaVigan09g197000_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length594
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_9-CM003379.1supercontigChr_9-CM003379.1:24688925..24689518 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
asasL003Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0242Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0484Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0644Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0902Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR211Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0268Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0319Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR194Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR286Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR177Pisum sativum Cameor genome v1aPisum sativum
aspsR205Pisum sativum Cameor genome v1aPisum sativum
aspsR206Pisum sativum Cameor genome v1aPisum sativum
aspvR192Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR222Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR155Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR173Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR182Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR225Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR184Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR210Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR233Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR136Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR180Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR183Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR225Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR228Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR140Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR167Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR139Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR211Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.006G143400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_27179Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_02214.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat1g176480.1Pisum sativum Cameor genome v1aPisum sativum
Vigun06g155200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_017232Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.1g366520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014662491.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg39114.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_02638.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan09g197000gene-LR48_Vigan09g197000_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g197000LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24688927LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24688927Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24689518LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24689518Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24689518LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24688925..24689518Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24689516..24689518LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24689516..24689518Vigna angularisstop_codon


Homology
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BLAST of LR48_mrnaVigan09g197000 vs. DB:Swiss
Match: BAG5_ARATH (BAG family molecular chaperone regulator 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BAG5 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.952e-63
Identity = 95/159 (59.75%), Postives = 124/159 (77.99%), Query Frame = 1 
Query:  160 YRAHRIRALYRKIAAVDSEADRLQRLIQRQDTVDAVRTDHLEKLRMNEALMALLLKLDSVPGIDPTVRDARRKVTHRIVGLQEILDSVSESQIDESGWWSMKN----------------WDEVLADMEESICRERGGDEMERFCAQNLGFRCLQRFLRE 588
            YR++RIR LY+KI++++ EA+R+Q +IQRQ+TVDA+R+D  E+LRMNE LMALLLKLDSVPG+DPT+R+ARRKV+ +IVG+QEILDS+SE++ DE  WW+  +                W+E +   EE +CRERGG+EMERFCAQ LGFRC QRFLRE
Sbjct:   61 YRSYRIRNLYKKISSINREANRVQSIIQRQETVDAIRSDEKERLRMNETLMALLLKLDSVPGLDPTIREARRKVSRKIVGMQEILDSISETK-DEIQWWNYNDLGGVDSGQGGGAWPLYWEEAV---EEEMCRERGGEEMERFCAQYLGFRCFQRFLRE 215
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g197000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 1
Match NameE-valueIdentityDescription
BAG5_ARATH8.952e-6359.75BAG family molecular chaperone regulator 5, mitoch... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..45
IPR003103BAG domainSMARTSM00264BAG_1coord: 65..142
e-value: 9.2E-15
score: 65.0
IPR003103BAG domainPFAMPF02179BAGcoord: 67..140
e-value: 1.2E-11
score: 44.8
IPR003103BAG domainPROSITEPS51035BAGcoord: 65..142
score: 12.912
IPR036533BAG domain superfamilyGENE3D1.20.58.120coord: 43..145
e-value: 7.4E-10
score: 40.8
IPR036533BAG domain superfamilySUPERFAMILY63491BAG domaincoord: 57..143
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 44..72
score: 7.968

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197000; organism=Vigna angularis; type=mRNA; length=594bp
ATGAAACCCTCTTCCAAATCAGGTTCCTTCTCCTCCTACTCAACTTCCAC
CACGCTCACCTACACCTACCACTATGACCACACTCCACCCCCACGCGCCA
ATTCCACTCCTCAACCATCCCCCTCCCCCTCCGCCGCCGCAGCCACCATC
CAATCTGCCTACCGCGCCCACCGCATTCGGGCCCTCTACCGGAAAATAGC
TGCGGTCGACTCCGAAGCCGACCGGCTGCAGCGCCTGATCCAGCGACAGG
ACACGGTGGACGCCGTGCGCACCGACCATCTGGAGAAGCTCAGAATGAAC
GAGGCGCTCATGGCCCTGCTGCTGAAGCTGGACTCTGTGCCCGGCATTGA
TCCGACGGTCAGGGATGCGCGAAGGAAAGTCACCCATCGGATCGTGGGCC
TCCAGGAGATACTGGACTCTGTATCGGAGAGCCAGATTGATGAGTCCGGC
TGGTGGTCCATGAAGAATTGGGACGAAGTATTGGCCGACATGGAAGAAAG
TATTTGTCGCGAAAGAGGCGGTGATGAAATGGAACGGTTTTGCGCTCAAA
ATCTTGGCTTTCGCTGCCTACAGAGGTTTCTTCGTGAACCTTGA
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protein sequence of LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=197bp
MKPSSKSGSFSSYSTSTTLTYTYHYDHTPPPRANSTPQPSPSPSAAAATI
QSAYRAHRIRALYRKIAAVDSEADRLQRLIQRQDTVDAVRTDHLEKLRMN
EALMALLLKLDSVPGIDPTVRDARRKVTHRIVGLQEILDSVSESQIDESG
WWSMKNWDEVLADMEESICRERGGDEMERFCAQNLGFRCLQRFLREP
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mRNA from alignment at Chr_9-CM003379.1:24688925..24689518+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197000; organism=Vigna angularis; type=mRNA; length=594bp; location=Sequence derived from: Chr_9-CM003379.1:24688925..24689518+ (Vigna angularis
ATGAAACCCTCTTCCAAATCAGGTTCCTTCTCCTCCTACTCAACTTCCAC
CACGCTCACCTACACCTACCACTATGACCACACTCCACCCCCACGCGCCA
ATTCCACTCCTCAACCATCCCCCTCCCCCTCCGCCGCCGCAGCCACCATC
CAATCTGCCTACCGCGCCCACCGCATTCGGGCCCTCTACCGGAAAATAGC
TGCGGTCGACTCCGAAGCCGACCGGCTGCAGCGCCTGATCCAGCGACAGG
ACACGGTGGACGCCGTGCGCACCGACCATCTGGAGAAGCTCAGAATGAAC
GAGGCGCTCATGGCCCTGCTGCTGAAGCTGGACTCTGTGCCCGGCATTGA
TCCGACGGTCAGGGATGCGCGAAGGAAAGTCACCCATCGGATCGTGGGCC
TCCAGGAGATACTGGACTCTGTATCGGAGAGCCAGATTGATGAGTCCGGC
TGGTGGTCCATGAAGAATTGGGACGAAGTATTGGCCGACATGGAAGAAAG
TATTTGTCGCGAAAGAGGCGGTGATGAAATGGAACGGTTTTGCGCTCAAA
ATCTTGGCTTTCGCTGCCTACAGAGGTTTCTTCGTGAACCTTGA
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Coding sequence (CDS) from alignment at Chr_9-CM003379.1:24688925..24689518+

>LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197000; organism=Vigna angularis; type=CDS; length=594bp; location=Sequence derived from: Chr_9-CM003379.1:24688925..24689518+ (Vigna angularis
ATGAAACCCTCTTCCAAATCAGGTTCCTTCTCCTCCTACTCAACTTCCAC
CACGCTCACCTACACCTACCACTATGACCACACTCCACCCCCACGCGCCA
ATTCCACTCCTCAACCATCCCCCTCCCCCTCCGCCGCCGCAGCCACCATC
CAATCTGCCTACCGCGCCCACCGCATTCGGGCCCTCTACCGGAAAATAGC
TGCGGTCGACTCCGAAGCCGACCGGCTGCAGCGCCTGATCCAGCGACAGG
ACACGGTGGACGCCGTGCGCACCGACCATCTGGAGAAGCTCAGAATGAAC
GAGGCGCTCATGGCCCTGCTGCTGAAGCTGGACTCTGTGCCCGGCATTGA
TCCGACGGTCAGGGATGCGCGAAGGAAAGTCACCCATCGGATCGTGGGCC
TCCAGGAGATACTGGACTCTGTATCGGAGAGCCAGATTGATGAGTCCGGC
TGGTGGTCCATGAAGAATTGGGACGAAGTATTGGCCGACATGGAAGAAAG
TATTTGTCGCGAAAGAGGCGGTGATGAAATGGAACGGTTTTGCGCTCAAA
ATCTTGGCTTTCGCTGCCTACAGAGGTTTCTTCGTGAACCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003103BAG_domain
IPR036533BAG_dom_sf
IPR000048IQ_motif_EF-hand-BS
Vocabulary: Molecular Function
TermDefinition
GO:0051087protein-folding chaperone binding
GO:0005515protein binding