LR48_mrnaVigan09g198700

Transcript Overview


Name	LR48_mrnaVigan09g198700
Unique Name	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1
Type	mRNA
Organism	Vigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length	861
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_9-CM003379.1	supercontig	Chr_9-CM003379.1:24812861..24813721 -	Vigna angularis Jingnong 6 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna angularis Jingnong 6 genome v1.1	2020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.1	2020-05-21
BLAST: V. angularis Jingnong 6 genome v1.1	2020-05-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ascaR153	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ascaR228	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
asasL003	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasL0242	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0484	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0644	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anasL0902	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascaiR209	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ascrR204	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
aspsR177	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR205	Pisum sativum Cameor genome v1a	Pisum sativum
aspsR206	Pisum sativum Cameor genome v1a	Pisum sativum
aspvR192	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
aspvR222	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
asvuR155	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
asvuR173	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
astifR182	Vicia faba cv. Tiffany genome v1.0	Vicia faba
astifR225	Vicia faba cv. Tiffany genome v1.0	Vicia faba
asvfhR184	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvfhR210	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvfhR233	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
asvrvR136	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvrvR180	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
asvssR183	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvssR225	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
asvuaR140	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
asvuaR167	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ascanR139	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ascanR211	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Vfaba.Tiffany.R1.1g365280.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vigun06g153500.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Ca_07886	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-TanjilR_17843	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
jg39151.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Psat1g174160.1	Pisum sativum Cameor genome v1a	Pisum sativum
rna-TanjilR_27167	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
evm.model.Chr06.1604	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Ca_02168.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
rna-XM_004486271.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vfaba.Hedin2.R1.1g445920.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Cr_00726.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
rna-XM_014661912.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Phvul.006G141800.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LR48_Vigan09g198700	gene-LR48_Vigan09g198700_Va_Jingnong6_v1.1	Vigna angularis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g198700	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-protein	Vigna angularis	polypeptide
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1	Vigna angularis	polypeptide

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813719..24813721	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813719..24813721	Vigna angularis	start_codon

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813346..24813721	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813346..24813721	Vigna angularis	exon
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813078..24813254	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813078..24813254	Vigna angularis	exon
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24812861..24813003	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24812861..24813003	Vigna angularis	exon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813255..24813345	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813255..24813345	Vigna angularis	intron
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813004..24813077	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813004..24813077	Vigna angularis	intron

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS21122	CDS21122_Va_Jingnong6_v1.1	Vigna angularis	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24812861..24812863	LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24812861..24812863	Vigna angularis	stop_codon

Homology

The following BLAST results are available for this feature:

BLAST of LR48_mrnaVigan09g198700 vs.

BLAST of LR48_mrnaVigan09g198700 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 10..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..87

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_9-CM003379.1:24812861..24813721-
coding sequence from alignment at Chr_9-CM003379.1:24812861..24813721-

mRNA sequence

>LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g198700; organism=Vigna angularis; type=mRNA; length=861bp
ATGGAGGAGTTTTCAGGGAGGGGAGAGTTAAGGAGAATGCAGAGGGAGCA
AGAGAGAGAGAGGAGGCGCATCCGTGACAGACAGAGGAGACAATCAATGA
CTCAAGAACAAAGGGAGAGACATCTTGCAAGACGCAGGAGAAACTACCAA
CTCAGAAGACAAAGAGCAGCAAATGCTCATCTTCCATACTCTTCTTTTCC
TCAATTTCAACCTCCAGAATCAAGTGCTGGTGAAGCCAGCACCAGTGATG
AGCTTCAGGGTTTGCCTTCTCCAACCTTTGCAGAATATGGAATCTTTCCT
CAAGTCATTGGTTTCCCTCATCACCACCTCAACCTAGGACAACAAATGCT
AAACATGGGAACCAAAGTGGTTCAAGGTGATTCATGTTAAGTTCACATTA
CCAATCTTTTGTTGTTTTCTTTTCAAGCTAACAAATTTATGTTTCATTCA
CTTTTTTTGAACAATAGGGTCATCGGTCCCCTTGGAAACTTTACTTTGTA
AACCAGCCAATTCACCAAAGCGGATGCGACTAAATCATGTCAGAGGTCTT
GCACGAAACCTGACACACTCCATTGTTAATCCTCCTTGTATTCGTTTGGT
TGCATCAGAATTAATACCTAAGGAACATCAAGATGTATCAGTTGGTAAGT
TTGGTGAGTGCTTTTAATGTAAAAAATAGGTTGTTAGCACTTTAAGTGTT
ATTGTTTTCATTTTTCAGGTAGCACAGTAAAATCATTGCGTTTGAATTGT
GTGAAGCGTCTTGCCCGATCAAAAAATTCTTTTTATGAGGAGACTGCATA
TGAGAATGACCTTAAATTTCCAGCAGGAGGGTTCAGTTACTTGCTAGCAA
GAACTTCATAG

protein sequence of LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=231bp
MEEFSGRGELRRMQREQERERRRIRDRQRRQSMTQEQRERHLARRRRNYQ
LRRQRAANAHLPYSSFPQFQPPESSAGEASTSDELQGLPSPTFAEYGIFP
QVIGFPHHHLNLGQQMLNMGTKVVQGSSVPLETLLCKPANSPKRMRLNHV
RGLARNLTHSIVNPPCIRLVASELIPKEHQDVSVGSTVKSLRLNCVKRLA
RSKNSFYEETAYENDLKFPAGGFSYLLARTS

mRNA from alignment at Chr_9-CM003379.1:24812861..24813721-

Legend: polypeptidestart_codonexonCDSintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g198700; organism=Vigna angularis; type=mRNA; length=861bp; location=Sequence derived from: Chr_9-CM003379.1:24812861..24813721- (Vigna angularis
ATGGAGGAGTTTTCAGGGAGGGGAGAGTTAAGGAGAATGCAGAGGGAGCA
AGAGAGAGAGAGGAGGCGCATCCGTGACAGACAGAGGAGACAATCAATGA
CTCAAGAACAAAGGGAGAGACATCTTGCAAGACGCAGGAGAAACTACCAA
CTCAGAAGACAAAGAGCAGCAAATGCTCATCTTCCATACTCTTCTTTTCC
TCAATTTCAACCTCCAGAATCAAGTGCTGGTGAAGCCAGCACCAGTGATG
AGCTTCAGGGTTTGCCTTCTCCAACCTTTGCAGAATATGGAATCTTTCCT
CAAGTCATTGGTTTCCCTCATCACCACCTCAACCTAGGACAACAAATGCT
AAACATGGGAACCAAAGTGGTTCAAGGTGATTCATGTTAAGTTCACATTA
CCAATCTTTTGTTGTTTTCTTTTCAAGCTAACAAATTTATGTTTCATTCA
CTTTTTTTGAACAATAGGGTCATCGGTCCCCTTGGAAACTTTACTTTGTA
AACCAGCCAATTCACCAAAGCGGATGCGACTAAATCATGTCAGAGGTCTT
GCACGAAACCTGACACACTCCATTGTTAATCCTCCTTGTATTCGTTTGGT
TGCATCAGAATTAATACCTAAGGAACATCAAGATGTATCAGTTGGTAAGT
TTGGTGAGTGCTTTTAATGTAAAAAATAGGTTGTTAGCACTTTAAGTGTT
ATTGTTTTCATTTTTCAGGTAGCACAGTAAAATCATTGCGTTTGAATTGT
GTGAAGCGTCTTGCCCGATCAAAAAATTCTTTTTATGAGGAGACTGCATA
TGAGAATGACCTTAAATTTCCAGCAGGAGGGTTCAGTTACTTGCTAGCAA
GAACTTCATAG

Coding sequence (CDS) from alignment at Chr_9-CM003379.1:24812861..24813721-

>LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g198700; organism=Vigna angularis; type=CDS; length=696bp; location=Sequence derived from: Chr_9-CM003379.1:24812861..24813721- (Vigna angularis
ATGGAGGAGTTTTCAGGGAGGGGAGAGTTAAGGAGAATGCAGAGGGAGCA
AGAGAGAGAGAGGAGGCGCATCCGTGACAGACAGAGGAGACAATCAATGA
CTCAAGAACAAAGGGAGAGACATCTTGCAAGACGCAGGAGAAACTACCAA
CTCAGAAGACAAAGAGCAGCAAATGCTCATCTTCCATACTCTTCTTTTCC
TCAATTTCAACCTCCAGAATCAAGTGCTGGTGAAGCCAGCACCAGTGATG
AGCTTCAGGGTTTGCCTTCTCCAACCTTTGCAGAATATGGAATCTTTCCT
CAAGTCATTGGTTTCCCTCATCACCACCTCAACCTAGGACAACAAATGCT
AAACATGGGAACCAAAGTGGTTCAAGGGTCATCGGTCCCCTTGGAAACTT
TACTTTGTAAACCAGCCAATTCACCAAAGCGGATGCGACTAAATCATGTC
AGAGGTCTTGCACGAAACCTGACACACTCCATTGTTAATCCTCCTTGTAT
TCGTTTGGTTGCATCAGAATTAATACCTAAGGAACATCAAGATGTATCAG
TTGGTAGCACAGTAAAATCATTGCGTTTGAATTGTGTGAAGCGTCTTGCC
CGATCAAAAAATTCTTTTTATGAGGAGACTGCATATGAGAATGACCTTAA
ATTTCCAGCAGGAGGGTTCAGTTACTTGCTAGCAAGAACTTCATAG

Search form

LR48_mrnaVigan09g198700