LR48_mrnaVigan09g198700

Transcript Overview
NameLR48_mrnaVigan09g198700
Unique NameLR48_mrnaVigan09g198700_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length861
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_9-CM003379.1supercontigChr_9-CM003379.1:24812861..24813721 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR153Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR228Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL003Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0242Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0484Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0644Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0902Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR209Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascrR204Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR177Pisum sativum Cameor genome v1aPisum sativum
aspsR205Pisum sativum Cameor genome v1aPisum sativum
aspsR206Pisum sativum Cameor genome v1aPisum sativum
aspvR192Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR222Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR155Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR173Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR182Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR225Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR184Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR210Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR233Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR136Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR180Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR183Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR225Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR140Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR167Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR139Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR211Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.1g365280.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun06g153500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_07886Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_17843Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg39151.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat1g174160.1Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_27167Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr06.1604Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_02168.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004486271.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Hedin2.R1.1g445920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_00726.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_014661912.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.006G141800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan09g198700gene-LR48_Vigan09g198700_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g198700LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813719..24813721LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813719..24813721Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813346..24813721LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813346..24813721Vigna angularisexon
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813078..24813254LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813078..24813254Vigna angularisexon
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24812861..24813003LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24812861..24813003Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813255..24813345LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813255..24813345Vigna angularisintron
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813004..24813077LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-intron-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24813004..24813077Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS21122CDS21122_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24812861..24812863LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:24812861..24812863Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g198700 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 10..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..87

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g198700; organism=Vigna angularis; type=mRNA; length=861bp
ATGGAGGAGTTTTCAGGGAGGGGAGAGTTAAGGAGAATGCAGAGGGAGCA
AGAGAGAGAGAGGAGGCGCATCCGTGACAGACAGAGGAGACAATCAATGA
CTCAAGAACAAAGGGAGAGACATCTTGCAAGACGCAGGAGAAACTACCAA
CTCAGAAGACAAAGAGCAGCAAATGCTCATCTTCCATACTCTTCTTTTCC
TCAATTTCAACCTCCAGAATCAAGTGCTGGTGAAGCCAGCACCAGTGATG
AGCTTCAGGGTTTGCCTTCTCCAACCTTTGCAGAATATGGAATCTTTCCT
CAAGTCATTGGTTTCCCTCATCACCACCTCAACCTAGGACAACAAATGCT
AAACATGGGAACCAAAGTGGTTCAAGGTGATTCATGTTAAGTTCACATTA
CCAATCTTTTGTTGTTTTCTTTTCAAGCTAACAAATTTATGTTTCATTCA
CTTTTTTTGAACAATAGGGTCATCGGTCCCCTTGGAAACTTTACTTTGTA
AACCAGCCAATTCACCAAAGCGGATGCGACTAAATCATGTCAGAGGTCTT
GCACGAAACCTGACACACTCCATTGTTAATCCTCCTTGTATTCGTTTGGT
TGCATCAGAATTAATACCTAAGGAACATCAAGATGTATCAGTTGGTAAGT
TTGGTGAGTGCTTTTAATGTAAAAAATAGGTTGTTAGCACTTTAAGTGTT
ATTGTTTTCATTTTTCAGGTAGCACAGTAAAATCATTGCGTTTGAATTGT
GTGAAGCGTCTTGCCCGATCAAAAAATTCTTTTTATGAGGAGACTGCATA
TGAGAATGACCTTAAATTTCCAGCAGGAGGGTTCAGTTACTTGCTAGCAA
GAACTTCATAG
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protein sequence of LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=231bp
MEEFSGRGELRRMQREQERERRRIRDRQRRQSMTQEQRERHLARRRRNYQ
LRRQRAANAHLPYSSFPQFQPPESSAGEASTSDELQGLPSPTFAEYGIFP
QVIGFPHHHLNLGQQMLNMGTKVVQGSSVPLETLLCKPANSPKRMRLNHV
RGLARNLTHSIVNPPCIRLVASELIPKEHQDVSVGSTVKSLRLNCVKRLA
RSKNSFYEETAYENDLKFPAGGFSYLLARTS
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mRNA from alignment at Chr_9-CM003379.1:24812861..24813721-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g198700; organism=Vigna angularis; type=mRNA; length=861bp; location=Sequence derived from: Chr_9-CM003379.1:24812861..24813721- (Vigna angularis
ATGGAGGAGTTTTCAGGGAGGGGAGAGTTAAGGAGAATGCAGAGGGAGCA
AGAGAGAGAGAGGAGGCGCATCCGTGACAGACAGAGGAGACAATCAATGA
CTCAAGAACAAAGGGAGAGACATCTTGCAAGACGCAGGAGAAACTACCAA
CTCAGAAGACAAAGAGCAGCAAATGCTCATCTTCCATACTCTTCTTTTCC
TCAATTTCAACCTCCAGAATCAAGTGCTGGTGAAGCCAGCACCAGTGATG
AGCTTCAGGGTTTGCCTTCTCCAACCTTTGCAGAATATGGAATCTTTCCT
CAAGTCATTGGTTTCCCTCATCACCACCTCAACCTAGGACAACAAATGCT
AAACATGGGAACCAAAGTGGTTCAAGGTGATTCATGTTAAGTTCACATTA
CCAATCTTTTGTTGTTTTCTTTTCAAGCTAACAAATTTATGTTTCATTCA
CTTTTTTTGAACAATAGGGTCATCGGTCCCCTTGGAAACTTTACTTTGTA
AACCAGCCAATTCACCAAAGCGGATGCGACTAAATCATGTCAGAGGTCTT
GCACGAAACCTGACACACTCCATTGTTAATCCTCCTTGTATTCGTTTGGT
TGCATCAGAATTAATACCTAAGGAACATCAAGATGTATCAGTTGGTAAGT
TTGGTGAGTGCTTTTAATGTAAAAAATAGGTTGTTAGCACTTTAAGTGTT
ATTGTTTTCATTTTTCAGGTAGCACAGTAAAATCATTGCGTTTGAATTGT
GTGAAGCGTCTTGCCCGATCAAAAAATTCTTTTTATGAGGAGACTGCATA
TGAGAATGACCTTAAATTTCCAGCAGGAGGGTTCAGTTACTTGCTAGCAA
GAACTTCATAG
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Coding sequence (CDS) from alignment at Chr_9-CM003379.1:24812861..24813721-

>LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g198700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g198700; organism=Vigna angularis; type=CDS; length=696bp; location=Sequence derived from: Chr_9-CM003379.1:24812861..24813721- (Vigna angularis
ATGGAGGAGTTTTCAGGGAGGGGAGAGTTAAGGAGAATGCAGAGGGAGCA
AGAGAGAGAGAGGAGGCGCATCCGTGACAGACAGAGGAGACAATCAATGA
CTCAAGAACAAAGGGAGAGACATCTTGCAAGACGCAGGAGAAACTACCAA
CTCAGAAGACAAAGAGCAGCAAATGCTCATCTTCCATACTCTTCTTTTCC
TCAATTTCAACCTCCAGAATCAAGTGCTGGTGAAGCCAGCACCAGTGATG
AGCTTCAGGGTTTGCCTTCTCCAACCTTTGCAGAATATGGAATCTTTCCT
CAAGTCATTGGTTTCCCTCATCACCACCTCAACCTAGGACAACAAATGCT
AAACATGGGAACCAAAGTGGTTCAAGGGTCATCGGTCCCCTTGGAAACTT
TACTTTGTAAACCAGCCAATTCACCAAAGCGGATGCGACTAAATCATGTC
AGAGGTCTTGCACGAAACCTGACACACTCCATTGTTAATCCTCCTTGTAT
TCGTTTGGTTGCATCAGAATTAATACCTAAGGAACATCAAGATGTATCAG
TTGGTAGCACAGTAAAATCATTGCGTTTGAATTGTGTGAAGCGTCTTGCC
CGATCAAAAAATTCTTTTTATGAGGAGACTGCATATGAGAATGACCTTAA
ATTTCCAGCAGGAGGGTTCAGTTACTTGCTAGCAAGAACTTCATAG
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