Vfaba.Tiffany.R1.2g142040.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6N595|A0A2Z6N595_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_314760 PE=4 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 1.564e-100 Identity = 161/236 (68.22%), Postives = 174/236 (73.73%), Query Frame = 0 Query: 6 TDSETHNNISFHSRNPQSPFLIALPFFKLP-ISQ--PPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIRLSNYRNR----------------------------------------RLVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGGLDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDVTSSQNKWMRRLQGIGSKTSASAN 198 TD+ET NNISFH N QSPF++ALPF KLP IS PP++ TSI AVDH SKLL SLASQNPI+NKLLSLSS FH+TC+QIR SNYRNR RLVLTWFPNAPPAIV+PLS+VCDPYLNVFRGLIPP+GGLDLSPILAFLVLNAFTSTA+ALPAELPITEQSKQGLE LQ T VTSSQNKWMRRLQG GSKT+ SAN Sbjct: 7 TDTETKNNISFHRGNSQSPFVVALPFLKLPTISNFSPPQLPTSIFNAVDHYSKLLQSLASQNPIINKLLSLSSQFHNTCYQIRCSNYRNRKLVNNYHNFAAVLPGDSVAGLVVANGLSNFLNLYNTLLVCRLVLTWFPNAPPAIVSPLSTVCDPYLNVFRGLIPPLGGLDLSPILAFLVLNAFTSTASALPAELPITEQSKQGLEASLQSTVVTSSQNKWMRRLQGTGSKTTTSAN 242
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|G7J8F7|G7J8F7_MEDTR (YGGT family protein OS=Medicago truncatula OX=3880 GN=11442240 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 5.937e-96 Identity = 160/236 (67.80%), Postives = 169/236 (71.61%), Query Frame = 0 Query: 6 TDSETHNNISFHSRNPQSPFLIALPFFKLPISQ--PPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIRLSNYRNRR----------------------------------------LVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGGLDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRL-QPTDVTSSQNKWMRRLQGIGSKTSASAN 198 TD+ET N+SF N QS +A PF K PIS PP++ TSIS AVD+CSKLL SLASQNP LNKLLSLSS FHDTC QIR SNY N R LVLTWFPNAPPAIVAPLS+VCDPYLNVFRGLIPP+GGLDLSPILAFLVLNAFTSTAAALPAELP+TEQSKQGLE RL QPTDVTSSQNKWMRRLQGIGSKTS SAN Sbjct: 12 TDTETKKNVSFCWGNSQS--TLAFPFLKSPISNFSPPQLPTSISNAVDNCSKLLHSLASQNPFLNKLLSLSSQFHDTCVQIRCSNYSNSRWVSNHHNFAAVLPGDSVAGLVVANGLNNFLSLYNTLLVARLVLTWFPNAPPAIVAPLSTVCDPYLNVFRGLIPPLGGLDLSPILAFLVLNAFTSTAAALPAELPVTEQSKQGLEARLQQPTDVTSSQNKWMRRLQGIGSKTSTSAN 245
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|B7FJ31|B7FJ31_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 7.309e-96 Identity = 160/236 (67.80%), Postives = 169/236 (71.61%), Query Frame = 0 Query: 6 TDSETHNNISFHSRNPQSPFLIALPFFKLPISQ--PPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIRLSNYRNRR----------------------------------------LVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGGLDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRL-QPTDVTSSQNKWMRRLQGIGSKTSASAN 198 TD+ET N+SF N QS +A PF K PIS PP++ TSIS AVD+CSKLL SLASQNP LNKLLSLSS FHDTC QIR SNY N R LVLTWFPNAPPAIVAPLS+VCDPYLNVFRGLIPP+GGLDLSPILAFLVLNAFTSTAAALPAELP+TEQSKQGLE RL QPTDVTSSQNKWMRRLQGIGSKTS SAN Sbjct: 12 TDTETKKNVSFCWGNSQS--TLAFPFLKSPISNFPPPQLPTSISNAVDNCSKLLHSLASQNPFLNKLLSLSSQFHDTCVQIRCSNYSNSRWVSNHHNFAAVLPGDSVAGLVVANGLNNFLSLYNTLLVARLVLTWFPNAPPAIVAPLSTVCDPYLNVFRGLIPPLGGLDLSPILAFLVLNAFTSTAAALPAELPVTEQSKQGLEARLQQPTDVTSSQNKWMRRLQGIGSKTSTSAN 245
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YAY2|A0A1S2YAY2_CICAR (ylmG homolog protein 2, chloroplastic OS=Cicer arietinum OX=3827 GN=LOC101500659 PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 1.456e-87 Identity = 148/228 (64.91%), Postives = 160/228 (70.18%), Query Frame = 0 Query: 13 NISFHSRNPQSPFLIALPFFKLPISQ--PPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIRLSNYRNRRL---------------------------------------VLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGG-LDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDVTSSQNKWMRRLQGIGSKTSASAN 198 N+SFH N QSP +ALPF KLPIS PP++ SIS A H S LL SLASQNP LNKLLSLSS FH+TCFQIR SN+RNRRL VLTWFPNAPPAIV PLS+VCDPYLN+FRGLIPP+GG LDLSPILAFLVLNAFTSTAAALPAELP+ EQSKQGLE RLQ TDVTSSQ KWMRR++ IGSKTS AN Sbjct: 17 NVSFHWGNAQSP--LALPFLKLPISNFSPPQLPASISNAAHHFSTLLHSLASQNPFLNKLLSLSSQFHNTCFQIRCSNFRNRRLLVNHNFAAVLPGDSVAGLVVANGLQNFLSLYNTLIIVRLVLTWFPNAPPAIVTPLSTVCDPYLNIFRGLIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPVAEQSKQGLEARLQSTDVTSSQKKWMRRIREIGSKTSTRAN 242
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MNT3|A0A2K3MNT3_TRIPR (YGGT family protein OS=Trifolium pratense OX=57577 GN=L195_g015582 PE=4 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 7.380e-86 Identity = 148/228 (64.91%), Postives = 160/228 (70.18%), Query Frame = 0 Query: 4 NGTDSETHNNISFH-SRNPQSPFLIALPFFKLPISQPPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIR------------------------------------LSNYRNR-------RLVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGGLDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDVTSSQNKWMRRLQ 187 NGTD+ET NNISFH RN QSPFL+ALP + PP++ TSIS AVDH S LL SLASQNPI+NKLLSLSS FH+TC+QIR LSN+ N RLVLTWFPNAPPAIV+PLS+VCDPYLNVFRGLIPP+GGLDLSPILAFLVLNAFTSTAAALPAELPI EQSKQGLE LQ T VTSSQNKWMRRL Sbjct: 5 NGTDTETKNNISFHWGRNSQSPFLVALP--NISNFSPPQLPTSISNAVDHFSTLLQSLASQNPIINKLLSLSSQFHNTCYQIRCSNYRNRNRRLLNNNYHNFAAVLPGDSVAGLVVANGLSNFLNLYNTLLVCRLVLTWFPNAPPAIVSPLSTVCDPYLNVFRGLIPPLGGLDLSPILAFLVLNAFTSTAAALPAELPIPEQSKQGLEASLQSTVVTSSQNKWMRRLH 230
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|V7AXC1|V7AXC1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G082300g PE=4 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 8.499e-68 Identity = 125/236 (52.97%), Postives = 149/236 (63.14%), Query Frame = 0 Query: 6 TDSETHNNISFHSRNPQSPFLIALPFFKLPISQ------PPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIR------------------------------LSNYRN-------RRLVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGG-LDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDVTSSQNKWMRRLQGIGSKTSASA 197 T+ E +S NPQ PF A+PF LP S PP++ TS + A DH LL +LASQNP LNK++SL S FH C QIR +SN+ N RLVLTWFPNAPP+IV+PLS++CDPYLN+FRGLIPP+GG LDLSPILAFLVLNAFTSTAAA+PAELP TEQS+QGL T LQ ++ ++SQ KWMRRL G S+TS A Sbjct: 11 TEIEKTKKVSHCWGNPQIPF--AIPFLTLPNSNFTTFLSPPQLHTSFTTAADHFFTLLHTLASQNPFLNKIISLQSQFHTLCVQIRKHGSVRSVGNHNFAAVLPGDSVAGLVVANGVSNFLNIYNTLLIVRLVLTWFPNAPPSIVSPLSTICDPYLNIFRGLIPPLGGTLDLSPILAFLVLNAFTSTAAAIPAELPTTEQSQQGLATPLQASNFSTSQKKWMRRLLGNKSRTSGGA 244
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RBV2|A0A0S3RBV2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G065700 PE=4 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 5.145e-64 Identity = 125/247 (50.61%), Postives = 149/247 (60.32%), Query Frame = 0 Query: 1 MAVNGTD------SETHNNISFHSRNPQSPFLIALPFFKLPISQ------PPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIR------------------------------LSNYRN-------RRLVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGG-LDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDVTSSQNKWMRRLQGIGSKTSASA 197 M N T+ +T +S N Q PF ALPF LP S PP++ TS++ DH LL SLASQN LNK++SL S FH C QIR + N+ N RLVLTWFPN PP+IV+PLS++CDPYLN+FRGLIPP+GG LDLSPILAFLVLNAFTSTAAALPAELP TE+S+QGL LQ ++VT+SQNKWMRRL G S+T+ A Sbjct: 1 MGANNTNDSTTEIEKTQKKLSHCWGNAQIPF--ALPFLTLPNSNFATFLSPPQLHTSLTAVADHFFTLLHSLASQNTFLNKIISLPSQFHTLCIQIRKQDSVRLMSNHNFAAVLPGDSVAGLVVANGILNFLNIYNTLLIVRLVLTWFPNTPPSIVSPLSTICDPYLNIFRGLIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPSTERSQQGLAPPLQTSNVTTSQNKWMRRLLGNKSRTTGGA 245
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3U1H5|A0A1S3U1H5_VIGRR (ylmG homolog protein 2, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106760941 PE=4 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.152e-63 Identity = 124/243 (51.03%), Postives = 147/243 (60.49%), Query Frame = 0 Query: 1 MAVNGTD------SETHNNISFHSRNPQSPFLIALPFFKLPISQ------PPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIR------------------------------LSNYRN-------RRLVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGG-LDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDVTSSQNKWMRRLQGIGSKT 193 M N T+ +T +S N Q PF ALPF LP S PP++ +S + DH LL SLASQNP LNK++SL S FH C QIR + N+ N RLVLTWFPN PP+IV+PLS++CDPYLN+FRGLIPP+GG LDLSPILAFLVLNAFTSTAAALPAELP TE+S+QGL LQ ++VT+SQNKWMRRL G S+T Sbjct: 1 MGANNTNDSTTEIEKTQKKVSHCWGNAQIPF--ALPFLTLPNSNLATFLSPPQLHSSFTAVADHFFTLLHSLASQNPFLNKIISLPSQFHTLCVQIRKQDSVRLVGNHNFAAVLPGDSVAGLVVANGVLNFLNIYNTLLIVRLVLTWFPNTPPSIVSPLSTICDPYLNIFRGLIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPTTERSQQGLAPPLQASNVTTSQNKWMRRLLGNKSRT 241
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NR73|A0A4D6NR73_VIGUN (YggT family protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3367 PE=4 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.658e-63 Identity = 128/248 (51.61%), Postives = 150/248 (60.48%), Query Frame = 0 Query: 1 MAVNGTD------SETHNNISFHSRNPQSPFLIALPFFKLPISQ------PPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIR------------------------------LSNYRN-------RRLVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGG-LDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDV-TSSQNKWMRRLQGIGSKTSASA 197 M N T+ +T +S N Q PF ALPF LP S PP++ TS + A DH LL SLASQNP LNK++SL S FH C QIR + N+ N RLVLTWFPN PP+IV+PLS++CDPYLN+FRGLIPP+GG LDLSPILAFLVLNAFTSTAAALPAELP TE+S+QGL LQP++V TSSQ KWMRRL G S+T +A Sbjct: 15 MGANNTNDSSTEIEKTQKKVSHCWGNAQIPF--ALPFLTLPNSNFATFLSPPQLHTSFTAAADHFLTLLHSLASQNPFLNKIISLPSQFHTLCVQIRKQDSVRLVGNHNFAAVLPGDSVAGLVVANGVLNFLNIYNTLLIVRLVLTWFPNTPPSIVSPLSTICDPYLNIFRGLIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPPTERSQQGLAPPLQPSNVTTSSQKKWMRRLLGNKSRTPGAA 260
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4P1QWR4|A0A4P1QWR4_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_09857 PE=4 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 6.830e-60 Identity = 118/222 (53.15%), Postives = 135/222 (60.81%), Query Frame = 0 Query: 20 NPQSPFLIALPFFKLPISQPPEIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIRLSNYRNR----------------------------------------RLVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGG-LDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDV--TSSQNKWMRRLQGIGSKTSASAN 198 N Q+P +ALPF L PP I T D+ K L S AS+NP LNK+ SLSS FH CFQIR SN + RLVLTWFPN PPAIV+PLS++CDPYLN+FRGLIPPIGG LDLSPILAFLVLNAFTSTAAALPAELP++EQS+QGL LQ TD+ TS ++KWMRR+ G S TS N Sbjct: 12 NAQTP--LALPFLNL---IPPPITT----VADNFLKSLNSFASENPFLNKIASLSSQFHTLCFQIRCSNSNRKMRLLSSHNFAAVLPGDSVAGLVVANGVQSFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTICDPYLNIFRGLIPPIGGTLDLSPILAFLVLNAFTSTAAALPAELPVSEQSEQGLAAPLQSTDIVTTSQKDKWMRRIHGNRSTTSGRVN 224
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9C595|YLMG2_ARATH (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.882e-39 Identity = 82/185 (44.32%), Postives = 100/185 (54.05%), Query Frame = 0 Query: 41 EIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIRLSNY-RNR---------------------------------------RLVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGGLDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDVTSSQNKWMRR 185 + S+ A + L SLAS+NP+ + + LSS FH C +IRL N R R RLVLTWFP+APPAIV PLS++CDPYLN+FRG IPP+GGLDLSPILAFLVLNAFTS+A ALP ELP + + SS+ KW+RR Sbjct: 60 DFHQSLISATEKFKGFLHSLASKNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINFLNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGGLDLSPILAFLVLNAFTSSAMALPCELPSADGA----------VSPASSETKWVRR 234
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. Araport11
Match: AT5G21920.1 (| YGGT family protein | Chr5:7241350-7242765 REVERSE LENGTH=251 | 201606) HSP 1 Score: 137.887 bits (346), Expect = 2.949e-40 Identity = 82/185 (44.32%), Postives = 100/185 (54.05%), Query Frame = 0 Query: 41 EIRTSISKAVDHCSKLLLSLASQNPILNKLLSLSSHFHDTCFQIRLSNY-RNR---------------------------------------RLVLTWFPNAPPAIVAPLSSVCDPYLNVFRGLIPPIGGLDLSPILAFLVLNAFTSTAAALPAELPITEQSKQGLETRLQPTDVTSSQNKWMRR 185 + S+ A + L SLAS+NP+ + + LSS FH C +IRL N R R RLVLTWFP+APPAIV PLS++CDPYLN+FRG IPP+GGLDLSPILAFLVLNAFTS+A ALP ELP + + SS+ KW+RR Sbjct: 60 DFHQSLISATEKFKGFLHSLASKNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINFLNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGGLDLSPILAFLVLNAFTSSAMALPCELPSADGA----------VSPASSETKWVRR 234 The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot) Total hits: 1
BLAST of Vfaba.Tiffany.R1.2g142040.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11) Total hits: 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Tiffany.R1.2g142040.1_tif_v1 ID=Vfaba.Tiffany.R1.2g142040.1_tif_v1; Name=Vfaba.Tiffany.R1.2g142040.1; organism=Vicia faba; type=mRNA; length=597bpback to top protein sequence of Vfaba.Tiffany.R1.2g142040.1_tif_v1 >Vfaba.Tiffany.R1.2g142040.1_tif_v1 ID=Vfaba.Tiffany.R1.2g142040.1_tif_v1; Name=Vfaba.Tiffany.R1.2g142040.1_tif_v1; organism=Vicia faba; type=polypeptide; length=198bpback to top mRNA from alignment at chr2:1122052043..1122054087- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Tiffany.R1.2g142040.1_tif_v1 ID=Vfaba.Tiffany.R1.2g142040.1_tif_v1; Name=Vfaba.Tiffany.R1.2g142040.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1122052043..1122054087- (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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