Vfaba.Tiffany.R1.2g208080.1

Transcript Overview
NameVfaba.Tiffany.R1.2g208080.1
Unique NameVfaba.Tiffany.R1.2g208080.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length564
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:1656775114..1656775677 +Vicia faba cv. Tiffany genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
tifzwsR202Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR252Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
astifL046Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL567Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL651Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifL0403Cajanus cajan Asha genome v1.0Cajanus cajan
cctifL0415Cajanus cajan Asha genome v1.0Cajanus cajan
cctifL0419Cajanus cajan Asha genome v1.0Cajanus cajan
crtifL057Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crtifL751Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
tiftifR168Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifL443Pisum sativum Cameor genome v1aPisum sativum
pstifL712Pisum sativum Cameor genome v1aPisum sativum
pstifL723Pisum sativum Cameor genome v1aPisum sativum
tifvfhR145Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhR180Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifL0023Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0025Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caitifL070Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0036Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0095Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0232Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0733Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0739Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0881Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL0958Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL1206Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
antifL1208Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
tifvrvR192Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR249Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvrvR300Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvuaR186Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvssR225Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvuaR223Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvssR232Vicia sativa cv. Studenica genome v1.0Vicia sativa
cantifL039Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL423Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL545Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.2g266680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g208080Vfaba.Tiffany.R1.2g208080_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g208080.1_tif_v1-exonVfaba.Tiffany.R1.2g208080.1_tif_v1-exon-chr2_tif_v1:1656775114..1656775677Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g208080.1_tif_v1-cdsVfaba.Tiffany.R1.2g208080.1_tif_v1-cds-chr2_tif_v1:1656775114..1656775677Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g208080.1_tif_v1Vfaba.Tiffany.R1.2g208080.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.2g208080.1_tif_v1Vfaba.Tiffany.R1.2g208080.1_tif_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3U7J3|A0A1S3U7J3_VIGRR (uncharacterized protein LOC106762540 OS=Vigna radiata var. radiata OX=3916 GN=LOC106762540 PE=4 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.030e-59
Identity = 85/153 (55.56%), Postives = 119/153 (77.78%), Query Frame = 0
Query:   25 TINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTP 177
            T NP  PFY+HPRENP +T++T  L++NNY +WS++MR AL SKNK+ FI+ S+ +P   D TYD WE  N M+LSW+ +TLSPHIA+S I  +   ELW++L+ERF+KG++F+ SNLL+++HSI+QG+R +S +FT +KILW+ELE LR  P
Sbjct:    7 TFNPASPFYLHPRENPGLTLITQVLNENNYSSWSRAMRRALVSKNKVKFIDGSIKRPQKSDDTYDAWERCNVMILSWMTKTLSPHIAESVIYVEEAKELWDELKERFSKGDYFKISNLLQDIHSIKQGERGVSQFFTDLKILWEELESLRPIP 159          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UK63|A0A1S3UK63_VIGRR (uncharacterized protein LOC106766184 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766184 PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.293e-58
Identity = 86/164 (52.44%), Postives = 121/164 (73.78%), Query Frame = 0
Query:   22 TATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFLQHTL 185
            T  T NP  PFY+HP ENP +T++T  L++NNY +WS+SMR AL SKNK+ FI+ ++ +P   D  YD WE  N M+LSWI +TLSPHIA+S I  +   +LWE+L+ERF+KG++F+ S+LL+++HSI+QG+R +S +FT +KILW+ELE LR  PS   + T 
Sbjct:    4 TDQTSNPNSPFYLHPGENPGLTLITQILNENNYASWSRSMRRALLSKNKVKFIDGTIKRPKKTDTMYDAWERCNMMILSWITKTLSPHIAESVIYIEEAKDLWEELKERFSKGDYFKISDLLQDIHSIKQGERGVSQFFTDLKILWEELESLRPVPSCTCEITC 167          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SJI1|A0A151SJI1_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_001116 PE=4 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.396e-58
Identity = 82/156 (52.56%), Postives = 117/156 (75.00%), Query Frame = 0
Query:   27 NPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFLQ 182
            NP+ P+Y+HPRENP   +V+  L+  NYH+WS+ ++ AL SKNK +F++ S+P P+  D  YD WE  N MV+SWI R++S  IAQS I  D+  ELW+DL++RF+KG++FR  +LL+E+HSI+QGDR++S++FT +KILW+ELE LR  PS   Q
Sbjct:    1 NPLSPYYLHPRENPGAVLVSTQLEGGNYHSWSRFIKRALQSKNKFTFVDGSIPMPTPEDELYDAWERCNVMVISWITRSVSAQIAQSTIYIDNAQELWQDLKDRFSKGDYFRTFDLLQEIHSIRQGDRNISSFFTDLKILWEELESLRPIPSCLCQ 156          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151RQ00|A0A151RQ00_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_033837 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.363e-58
Identity = 84/156 (53.85%), Postives = 117/156 (75.00%), Query Frame = 0
Query:   27 NPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFLQ 182
            NP+ P+Y+HPREN    +V+  L+  NYH+WS+SM+ AL SKNK  F++ S+P P+  D  YD WE  N MV+SWI +++S  IAQS I  D+  ELW+DL++RF+KG++FR SNLL+E+HSI+QGDR++S++FT +KILW+ELE LR  PS   Q
Sbjct:    9 NPLSPYYLHPRENSGAVLVSTQLEGGNYHSWSRSMKRALQSKNKFKFVDGSIPMPTPEDELYDAWELCNVMVISWITKSVSAQIAQSTIYIDNAQELWQDLKDRFSKGDYFRTSNLLQEIHSIRQGDRNISSFFTDLKILWEELESLRPIPSYLCQ 164          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UKV9|A0A1S3UKV9_VIGRR (uncharacterized protein LOC106766445 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766445 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 7.000e-58
Identity = 84/161 (52.17%), Postives = 122/161 (75.78%), Query Frame = 0
Query:   19 HIETATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSL 179
            H++ +T  NP  PFY+HP ENP +T++T  L++NNY +WS++M+ AL SKNK+ FI+ S+ KP   D TYD WE  N M+LSWI +TLSPHIA+S I  +   ELW++L+ERF+KG++F+ S+LL+++HSI+QG+R +S +F  +KILW+ELE LR  P+ 
Sbjct:    3 HLDQST--NPASPFYLHPGENPGLTLITQTLNENNYSSWSRAMKRALLSKNKIKFIDGSIKKPQKTDATYDTWERCNVMILSWITKTLSPHIAESVIYVEEAKELWDELKERFSKGDYFKISDLLQDIHSIKQGERGVSQFFIDLKILWEELESLRPIPTC 161          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3T9S8|A0A1S3T9S8_VIGRR (uncharacterized protein LOC106753251 OS=Vigna radiata var. radiata OX=3916 GN=LOC106753251 PE=4 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.467e-56
Identity = 82/157 (52.23%), Postives = 117/157 (74.52%), Query Frame = 0
Query:   25 TINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFL 181
            T NP  P+Y+HP ENP +T++T  L++NNY +WS+S+R AL SKNK+ FI+ S+ +P      YD WE  N M+LSWI +TLSPHIA+S I  +   ELW++L+ERF+KG++F+ S+LL+E+HSI+QG+R +S +FT +KILW+ELE LR  P+   
Sbjct:    7 TSNPASPYYLHPGENPGLTLITQMLNENNYSSWSRSLRRALLSKNKVKFIDGSIKRPQESGAVYDAWERCNVMILSWITKTLSPHIAESVIYIEDAKELWDELKERFSKGDYFKISDLLQEIHSIRQGERGVSQFFTDLKILWEELESLRPIPTCVC 163          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151TBK0|A0A151TBK0_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_019026 PE=4 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.974e-56
Identity = 82/156 (52.56%), Postives = 116/156 (74.36%), Query Frame = 0
Query:   27 NPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFLQ 182
            NP+ P+Y+HPREN    +V+  L+  NYH+WS+SM+ AL SKNK  F++ S+P P+  D  YD WE  N MV+SWI +++S  IAQS I  D+  ELW+DL++RF+KG++FR  +LL+E+HSI+QGDR++S++FT +KILW+ELE LR  PS   Q
Sbjct:    9 NPLSPYYLHPRENSGAVLVSTQLEGGNYHSWSRSMKRALQSKNKFKFVDGSIPMPTPEDELYDAWELCNVMVISWITKSVSAQIAQSTIYIDNAQELWQDLKDRFSKGDYFRTFDLLQEIHSIRQGDRNISSFFTDLKILWEELESLRPIPSYLCQ 164          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TT29|A0A1S3TT29_VIGRR (uncharacterized protein LOC106758503 OS=Vigna radiata var. radiata OX=3916 GN=LOC106758503 PE=4 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.047e-56
Identity = 82/157 (52.23%), Postives = 118/157 (75.16%), Query Frame = 0
Query:   21 ETATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTP 177
            ++  T NP  PFY+HP ENP +T++T  L++NNY +WS++MR AL SKNK  FI+ S+ +P   D TYD WE  N M+ SW+ +TLSPHIA+S I  +   ELW++L+ERF+KG++F+ S+LL+++HSI+QG+R +S +FT +KILW+ELE LR  P
Sbjct:    3 QSDQTFNPASPFYLHPGENPGLTLITQVLNENNYSSWSRAMRRALVSKNKAKFIDGSIRRPQKNDDTYDAWERCNVMIXSWMTKTLSPHIAESVIYIEEAKELWDELKERFSKGDYFKISDLLQDIHSIKQGERGVSQFFTDLKILWEELESLRPIP 159          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3T9X1|A0A1S3T9X1_VIGRR (uncharacterized protein LOC106753288 OS=Vigna radiata var. radiata OX=3916 GN=LOC106753288 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.047e-55
Identity = 82/154 (53.25%), Postives = 116/154 (75.32%), Query Frame = 0
Query:   21 ETATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLR 174
            +T    NP  PFY+HP ENP +T++T  L++NNY +WS+SMR AL SKNK+ FI+ S+ +P   D  YD WE  N M+LSWI +TLSPHIA+S I  +   +LW++L+ERF+KGN+F+ S+LL+++HSI+QG+R +S +FT +KIL +ELE LR
Sbjct:    3 QTDQASNPTSPFYLHPGENPGLTLITQVLNENNYSSWSRSMRRALLSKNKVKFIDGSIKRPQKTDVVYDAWERCNMMILSWITKTLSPHIAESVIYVEEAKKLWDELKERFSKGNYFKISDLLQDIHSIRQGERGVSQFFTDLKILSEELESLR 156          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V0N0|A0A1S3V0N0_VIGRR (uncharacterized protein LOC106770416 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770416 PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.474e-55
Identity = 88/158 (55.70%), Postives = 119/158 (75.32%), Query Frame = 0
Query:   22 TATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSL 179
            T  T NP  P+Y+HP ENP +++++  LD++NY +WS+SMR AL SKNKL FIN  + KP   D  YD WE  N MVLSWI +TLS HIA+S +  +   ELWE+L+ERF+KG+HF+FS+LL+E+HSI+QG+R+++ YFT +KILW+ELE LR  PS 
Sbjct:    4 TEQTNNPSSPYYLHPGENPGISLISQILDESNYTSWSRSMRRALLSKNKLKFINGEIKKPKREDALYDAWERNNMMVLSWIIKTLSVHIAESVVYVEDAQELWEELKERFSKGDHFKFSDLLQEIHSIKQGERTVNQYFTYLKILWEELEFLRPIPSC 161          
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. Araport11
Match: AT1G21280.1 (| Copia-like polyprotein/retrotransposon | Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606)

HSP 1 Score: 91.2781 bits (225), Expect = 1.314e-22
Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = 0
Query:   25 TINPIHPFYIHPR-ENPS-VTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTP 177
            T +P  P+Y+ P   +PS  +I     D++NY  W    R  L    K  FI+ +LPKP  + P Y  WE  N+MV+ W+  +++  + +S +  ++  ++WEDLR  F      +   L R L +++QG  S+  YF  +  +W EL +    P
Sbjct:   11 TSDPDSPYYLPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIP 165          
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3U7J3|A0A1S3U7J3_VIGRR9.030e-5955.56uncharacterized protein LOC106762540 OS=Vigna radi... [more]
tr|A0A1S3UK63|A0A1S3UK63_VIGRR1.293e-5852.44uncharacterized protein LOC106766184 OS=Vigna radi... [more]
tr|A0A151SJI1|A0A151SJI1_CAJCA1.396e-5852.56Uncharacterized protein (Fragment) OS=Cajanus caja... [more]
tr|A0A151RQ00|A0A151RQ00_CAJCA3.363e-5853.85Uncharacterized protein (Fragment) OS=Cajanus caja... [more]
tr|A0A1S3UKV9|A0A1S3UKV9_VIGRR7.000e-5852.17uncharacterized protein LOC106766445 OS=Vigna radi... [more]
tr|A0A1S3T9S8|A0A1S3T9S8_VIGRR1.467e-5652.23uncharacterized protein LOC106753251 OS=Vigna radi... [more]
tr|A0A151TBK0|A0A151TBK0_CAJCA1.974e-5652.56Uncharacterized protein (Fragment) OS=Cajanus caja... [more]
tr|A0A1S3TT29|A0A1S3TT29_VIGRR2.047e-5652.23uncharacterized protein LOC106758503 OS=Vigna radi... [more]
tr|A0A1S3T9X1|A0A1S3T9X1_VIGRR1.047e-5553.25uncharacterized protein LOC106753288 OS=Vigna radi... [more]
tr|A0A1S3V0N0|A0A1S3V0N0_VIGRR2.474e-5555.70uncharacterized protein LOC106770416 OS=Vigna radi... [more]
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BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G21280.11.314e-2230.97| Copia-like polyprotein/retrotransposon | Chr1:74... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 98..172
e-value: 1.9E-8
score: 34.4
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 35..82
e-value: 4.3E-16
score: 58.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR37610CCHC-TYPE DOMAIN-CONTAINING PROTEINcoord: 27..164

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.2g208080.1_tif_v1 ID=Vfaba.Tiffany.R1.2g208080.1_tif_v1; Name=Vfaba.Tiffany.R1.2g208080.1; organism=Vicia faba; type=mRNA; length=564bp
ATGGCTTTAGATGTTGAATCTGACCCACACTCTTCACCCAAAAATAACCC
TAAACACATCGAAACAGCAACCACCATCAATCCCATCCACCCCTTCTACA
TTCATCCCAGAGAGAATCCCAGTGTCACCATCGTTACACCGCCCCTCGAT
GACAACAATTATCACAACTGGAGTAAATCCATGCGCCACGCTCTCACCTC
CAAGAACAAACTTTCTTTCATCAATGAAAGTCTCCCGAAACCTTCTACTT
ATGACCCTACATATGACCAATGGGAACACACAAATAGCATGGTTCTTTCA
TGGATTAACCGCACCCTCTCCCCTCATATTGCACAAAGTAAAATTTGCTT
CGACTCCACATTCGAGCTATGGGAAGATCTCCGTGAAAGATTCACCAAAG
GTAATCATTTTCGTTTCTCTAATCTTCTTCGCGAATTACATTCTATACAG
CAAGGAGATCGATCTTTATCTGCATATTTCACCGCCATGAAAATCCTTTG
GGATGAGCTCGAAGATTTACGTCATACTCCATCTTTGTTCTTGCAACACA
CCCTACACATGTGA
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protein sequence of Vfaba.Tiffany.R1.2g208080.1_tif_v1

>Vfaba.Tiffany.R1.2g208080.1_tif_v1 ID=Vfaba.Tiffany.R1.2g208080.1_tif_v1; Name=Vfaba.Tiffany.R1.2g208080.1_tif_v1; organism=Vicia faba; type=polypeptide; length=187bp
MALDVESDPHSSPKNNPKHIETATTINPIHPFYIHPRENPSVTIVTPPLD
DNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLS
WINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQ
QGDRSLSAYFTAMKILWDELEDLRHTPSLFLQHTLHM
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mRNA from alignment at chr2:1656775114..1656775677+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.2g208080.1_tif_v1 ID=Vfaba.Tiffany.R1.2g208080.1_tif_v1; Name=Vfaba.Tiffany.R1.2g208080.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1656775114..1656775677+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
IPR029472Copia-like_N