Vfaba.Tiffany.R1.5g146920.1

Transcript Overview


Name	Vfaba.Tiffany.R1.5g146920.1
Unique Name	Vfaba.Tiffany.R1.5g146920.1_tif_v1
Type	mRNA
Organism	Vicia faba (Faba bean)
Sequence length	441

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:1258765113..1258765666 -	Vicia faba cv. Tiffany genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vicia faba cv. Tiffany genome v1.0	2023-05-02
InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11	2023-05-10

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
tifzwsR443	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
astifL306	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
catifL222	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
catifL345	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cctifL0157	Cajanus cajan Asha genome v1.0	Cajanus cajan
crtifL275	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crtifL425	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
pstifL242	Pisum sativum Cameor genome v1a	Pisum sativum
pvtifL573	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
tifvfhR361	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvuR635	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
tifvuR637	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
antifL0451	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL0697	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL0851	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL1157	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
tifvuaR535	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
tifvuaR544	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
tifvssR641	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
cantifL183	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
cantifL286	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g146920	Vfaba.Tiffany.R1.5g146920_tif_v1	Vicia faba	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g146920.1_tif_v1-exon	Vfaba.Tiffany.R1.5g146920.1_tif_v1-exon-chr5_tif_v1:1258765113..1258765178	Vicia faba	exon
Vfaba.Tiffany.R1.5g146920.1_tif_v1-exon	Vfaba.Tiffany.R1.5g146920.1_tif_v1-exon-chr5_tif_v1:1258765292..1258765666	Vicia faba	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g146920.1_tif_v1-cds	Vfaba.Tiffany.R1.5g146920.1_tif_v1-cds-chr5_tif_v1:1258765113..1258765178	Vicia faba	CDS
Vfaba.Tiffany.R1.5g146920.1_tif_v1-cds	Vfaba.Tiffany.R1.5g146920.1_tif_v1-cds-chr5_tif_v1:1258765292..1258765666	Vicia faba	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g146920.1_tif_v1	Vfaba.Tiffany.R1.5g146920.1_tif_v1	Vicia faba	polypeptide
Vfaba.Tiffany.R1.5g146920.1_tif_v1	Vfaba.Tiffany.R1.5g146920.1_tif_v1-protein	Vicia faba	polypeptide

Homology

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BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392QL66|A0A392QL66_9FABA (Pentatricopeptide repeat-containing protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.573e-78
Identity = 110/121 (90.91%), Postives = 117/121 (96.69%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTL 121
            MSIRWPRVLNPT LSQII TQKNPLKAL+IFN+AKSKYPKYSHNGP+YATMITILG+S RLKEM+DLIEQMKQDSCECKDS+FVSAIKTYAK+GLVDEAI LYKNIPQFNCVNWTQSFNTL
Sbjct:    1 MSIRWPRVLNPTYLSQIIRTQKNPLKALDIFNEAKSKYPKYSHNGPVYATMITILGTSGRLKEMRDLIEQMKQDSCECKDSVFVSAIKTYAKEGLVDEAISLYKNIPQFNCVNWTQSFNTL 121

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LFL9|A0A2K3LFL9_TRIPR (Pentatricopeptide repeat-containing protein at1g05600-like protein OS=Trifolium pratense OX=57577 GN=L195_g033303 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.509e-76
Identity = 113/125 (90.40%), Postives = 121/125 (96.80%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIM 125
            MSIRWPRVLNPT LSQII TQKNPLKAL+IFN+AKSKYPKYSHNGP+YATMITILG+S RLKEM+DLIEQMKQDSCECKDS+FVSAIKTYAK+GLVDEAI LYKNIPQFNCVNWTQSFN+LLEIM
Sbjct:    1 MSIRWPRVLNPTYLSQIIRTQKNPLKALDIFNEAKSKYPKYSHNGPVYATMITILGTSGRLKEMRDLIEQMKQDSCECKDSVFVSAIKTYAKEGLVDEAISLYKNIPQFNCVNWTQSFNSLLEIM 125

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NVR7|A0A2Z6NVR7_TRISU (PPR_long domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_297260 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.440e-75
Identity = 111/125 (88.80%), Postives = 120/125 (96.00%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIM 125
            MSIRWPRVLNPT LSQII TQKNPLKAL+IFN+AKSKYP+YSHNGP+YATMITILG+S RLKEM+DLIEQMKQDSCECKDS+FVSAIKTYAK+GLVDEAI LYKNIPQ+NCVNWTQSFN LLEIM
Sbjct:    1 MSIRWPRVLNPTYLSQIIRTQKNPLKALDIFNEAKSKYPEYSHNGPVYATMITILGTSGRLKEMRDLIEQMKQDSCECKDSVFVSAIKTYAKEGLVDEAISLYKNIPQYNCVNWTQSFNILLEIM 125

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|G7JZ89|G7JZ89_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11432583 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.112e-74
Identity = 111/125 (88.80%), Postives = 118/125 (94.40%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIM 125
            MSIRWPRVLNPT L+QII TQKNPLKALEIFN+AK KYPKYSHNGP+YATMI ILG+S RLKEM DLIEQMK+DSCECKDS+FVSAIKTYAK+GLVDEAI LYKNIPQFNCVNWTQSFNTLLEIM
Sbjct:    3 MSIRWPRVLNPTYLTQIIRTQKNPLKALEIFNEAKLKYPKYSHNGPVYATMINILGTSGRLKEMSDLIEQMKEDSCECKDSVFVSAIKTYAKEGLVDEAISLYKNIPQFNCVNWTQSFNTLLEIM 127

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Z0B9|A0A1S2Z0B9_CICAR (pentatricopeptide repeat-containing protein At1g05600 OS=Cicer arietinum OX=3827 GN=LOC101501143 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.621e-72
Identity = 108/125 (86.40%), Postives = 116/125 (92.80%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIM 125
            MSIRWPRVL PT LSQII TQKNPLKAL+IFN+AKSKYPKYSHNGP+YATMITILG+S RLKEMK++IEQMK DSCECKDS+FVS IK YAK GLVDEAI LYKNIP+FNCVNWTQSFNTLLEIM
Sbjct:    1 MSIRWPRVLTPTYLSQIIRTQKNPLKALQIFNEAKSKYPKYSHNGPVYATMITILGTSGRLKEMKEVIEQMKDDSCECKDSVFVSVIKMYAKVGLVDEAIGLYKNIPRFNCVNWTQSFNTLLEIM 125

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2SHB8|A0A0B2SHB8_GLYSO (Pentatricopeptide repeat-containing protein OS=Glycine soja OX=3848 GN=glysoja_027720 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.613e-68
Identity = 101/134 (75.37%), Postives = 117/134 (87.31%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRFGVA 134
            MSIRWPRVL PT LSQII TQKNPLKAL IFN+AKS+YP Y HNGP+YATMI+ILG+S RL EM+D+IEQMK+DSCECKDS+FVS IKTYA  GLVDEAI LYK+IP+FNCVNWT+SFNT+L+IM +  R  +A
Sbjct:    1 MSIRWPRVLTPTYLSQIIKTQKNPLKALNIFNEAKSRYPNYYHNGPVYATMISILGTSGRLNEMRDVIEQMKEDSCECKDSVFVSVIKTYANAGLVDEAISLYKSIPRFNCVNWTESFNTMLQIMVKENRLEIA 134

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9VHP6|A0A0L9VHP6_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g039000 PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 7.627e-68
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRFGVA 134
            MSIRWPR L PT LSQII TQKNP+KAL IFN+AKS+YP Y HNGP+YATMI ILG+S RL EM+D+IEQM++DSCECKDS+FVS IKTYA  G VDEA+ LYK IPQFNCVNWT+SFNT+L+IM    R  +A
Sbjct:    1 MSIRWPRRLTPTYLSQIIRTQKNPIKALHIFNEAKSRYPNYCHNGPVYATMINILGTSGRLTEMRDVIEQMREDSCECKDSVFVSVIKTYANAGQVDEAMSLYKTIPQFNCVNWTESFNTILQIMVNENRLEMA 134

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151RE76|A0A151RE76_CAJCA (Pentatricopeptide repeat-containing protein At1g05600 family OS=Cajanus cajan OX=3821 GN=KK1_037817 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.069e-67
Identity = 99/125 (79.20%), Postives = 110/125 (88.00%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIM 125
            MSIRWPRVL PT LSQII TQKNPLKAL IFN AKSKYP Y HNGP+YATMI+ILG+S RL EM+D+IEQM+ DSCECKDS+FVS IKTYA  G+VDEA+ LYK+IP FNCVNWTQSFNT+LEIM
Sbjct:    1 MSIRWPRVLTPTYLSQIIKTQKNPLKALHIFNHAKSKYPNYCHNGPVYATMISILGTSGRLTEMRDVIEQMRNDSCECKDSLFVSVIKTYANAGMVDEALSLYKSIPHFNCVNWTQSFNTMLEIM 125

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|I1L425|I1L425_SOYBN (PPR_long domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_09G172300 PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.045e-66
Identity = 99/132 (75.00%), Postives = 115/132 (87.12%), Query Frame = 0

Query:    3 IRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRFGVA 134
            IRWPRVL PT LSQII TQKNPLKAL IFN+AKS+YP Y HNGP+YATMI+ILG+S RL EM+D+IEQMK+DSCECKDS+FVS IKTYA  GLVDEAI LYK+IP+FNCVNWT+SFNT+L+IM +  R  +A
Sbjct:    5 IRWPRVLTPTYLSQIIKTQKNPLKALNIFNEAKSRYPNYYHNGPVYATMISILGTSGRLNEMRDVIEQMKEDSCECKDSVFVSVIKTYANAGLVDEAISLYKSIPRFNCVNWTESFNTMLQIMVKENRLEIA 136

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Match: tr|V7C3C8|V7C3C8_PHAVU (PPR_long domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G147700g PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.500e-66
Identity = 99/134 (73.88%), Postives = 114/134 (85.07%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRFGVA 134
            MSIRWPRVL PT LSQII TQKNP+KAL IFN+AKS+YP Y HNGP+YATMI+ILG+S RL EMKD+IEQM++DSCECKDS+FVS IKTYA  G VDEA+ LYK IPQFNCVNWT+SFNT+L+IM    R  +A
Sbjct:    1 MSIRWPRVLTPTYLSQIIRTQKNPIKALHIFNEAKSRYPNYHHNGPVYATMISILGTSGRLTEMKDVIEQMREDSCECKDSVFVSVIKTYANAGQVDEAMSLYKTIPQFNCVNWTESFNTILQIMVNENRLEMA 134

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SYK1|PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.410e-49
Identity = 73/127 (57.48%), Postives = 105/127 (82.68%), Query Frame = 0

Query:    3 IRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLL-EIMEES 128
            +RWPRVL P+ LSQI+  QKNP+ AL++F +AK ++P Y HNG +YATMI ILG S+R+ EMK +IE+MK+DSCECKDS+F S I+T+++ G +++AI L+K++ +FNCVNW+ SF+TLL E+++ES
Sbjct:    4 VRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMVKES 130

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SS81|PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.506e-16
Identity = 34/127 (26.77%), Postives = 75/127 (59.06%), Query Frame = 0

Query:    3 IRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQ-FNCVNWTQSFNTLLEIMEES 128
            + +P+ L+P  + +++ ++KNP  A  +F+ A +++P Y+H+  +Y  ++  L  +  +  +  ++E ++   C+C + + +S IKTY K  + D+A+ ++K + + F C    +S+NTLL    E+
Sbjct:    2 VVFPKSLSPKHVLKLLKSEKNPRAAFALFDSA-TRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEA 127

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LQQ1|PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.194e-12
Identity = 36/121 (29.75%), Postives = 66/121 (54.55%), Query Frame = 0

Query:    5 WPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIM 125
            W  V   T L +I    ++P +AL +F+Q +     + H+ P Y+++I  L  S     +  ++  ++  +  C++S+F+  I+ Y K G VD+AI ++  I  F+CV   QS NTL+ ++
Sbjct:   47 WEEVPFLTDLKEI----EDPEEALSLFHQYQEM--GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVL 161

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.805e-12
Identity = 34/129 (26.36%), Postives = 68/129 (52.71%), Query Frame = 0

Query:    5 WPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQD--SCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRF 131
            WP+ L P +L  +IT Q+N   AL+IF  A   +P ++HN   Y +++  L  +     ++ L+  ++      +C +++F+  ++ Y   G  + ++ ++  IP F      +S NTLL ++ ++ RF
Sbjct:   43 WPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRF 171

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9CA58|PP120_ARATH (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana OX=3702 GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.635e-12
Identity = 34/127 (26.77%), Postives = 72/127 (56.69%), Query Frame = 0

Query:    9 LNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQD-SCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRFGVA 134
            L P  ++ +I  QK+P+KALE+FN  + K   + H    Y ++I  LG   + + M++++  M+++      + ++V A+K Y ++G V EA+ +++ +  ++C     S+N ++ ++ +S  F  A
Sbjct:    5 LLPKHVTAVIKCQKDPMKALEMFNSMR-KEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQA 130

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FNL2|PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.245e-11
Identity = 31/135 (22.96%), Postives = 75/135 (55.56%), Query Frame = 0

Query:    1 MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPK-YSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRFGVA 134
            M  +W + + P+Q+ +++  +K+  K++ +F+ A ++Y   Y H+   +  M+  L S+++ K  +DLI +MK ++C   + I +S  + Y +     +++ ++  +  F+C    +++ T+L I+ E  +  +A
Sbjct:    6 MMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLA 140

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT1G05600.3 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:1672161-1673675 FORWARD LENGTH=504 | 201606)

HSP 1 Score: 168.703 bits (426), Expect = 1.442e-50
Identity = 73/127 (57.48%), Postives = 105/127 (82.68%), Query Frame = 0

Query:    3 IRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLL-EIMEES 128
            +RWPRVL P+ LSQI+  QKNP+ AL++F +AK ++P Y HNG +YATMI ILG S+R+ EMK +IE+MK+DSCECKDS+F S I+T+++ G +++AI L+K++ +FNCVNW+ SF+TLL E+++ES
Sbjct:    4 VRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMVKES 130

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT1G05600.2 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:1672161-1673675 FORWARD LENGTH=504 | 201606)

HSP 1 Score: 168.703 bits (426), Expect = 1.442e-50
Identity = 73/127 (57.48%), Postives = 105/127 (82.68%), Query Frame = 0

Query:    3 IRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLL-EIMEES 128
            +RWPRVL P+ LSQI+  QKNP+ AL++F +AK ++P Y HNG +YATMI ILG S+R+ EMK +IE+MK+DSCECKDS+F S I+T+++ G +++AI L+K++ +FNCVNW+ SF+TLL E+++ES
Sbjct:    4 VRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMVKES 130

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT1G05600.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:1672161-1673675 FORWARD LENGTH=504 | 201606)

HSP 1 Score: 168.703 bits (426), Expect = 1.442e-50
Identity = 73/127 (57.48%), Postives = 105/127 (82.68%), Query Frame = 0

Query:    3 IRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLL-EIMEES 128
            +RWPRVL P+ LSQI+  QKNP+ AL++F +AK ++P Y HNG +YATMI ILG S+R+ EMK +IE+MK+DSCECKDS+F S I+T+++ G +++AI L+K++ +FNCVNW+ SF+TLL E+++ES
Sbjct:    4 VRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMVKES 130

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT3G09060.2 (| Pentatricopeptide repeat (PPR) superfamily protein | Chr3:2766367-2768430 REVERSE LENGTH=687 | 201606)

HSP 1 Score: 77.411 bits (189), Expect = 3.586e-17
Identity = 34/127 (26.77%), Postives = 75/127 (59.06%), Query Frame = 0

Query:    3 IRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQ-FNCVNWTQSFNTLLEIMEES 128
            + +P+ L+P  + +++ ++KNP  A  +F+ A +++P Y+H+  +Y  ++  L  +  +  +  ++E ++   C+C + + +S IKTY K  + D+A+ ++K + + F C    +S+NTLL    E+
Sbjct:    2 VVFPKSLSPKHVLKLLKSEKNPRAAFALFDSA-TRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEA 127

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT3G09060.1 (| Pentatricopeptide repeat (PPR) superfamily protein | Chr3:2766367-2768430 REVERSE LENGTH=687 | 201606)

HSP 1 Score: 77.411 bits (189), Expect = 3.586e-17
Identity = 34/127 (26.77%), Postives = 75/127 (59.06%), Query Frame = 0

Query:    3 IRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQ-FNCVNWTQSFNTLLEIMEES 128
            + +P+ L+P  + +++ ++KNP  A  +F+ A +++P Y+H+  +Y  ++  L  +  +  +  ++E ++   C+C + + +S IKTY K  + D+A+ ++K + + F C    +S+NTLL    E+
Sbjct:    2 VVFPKSLSPKHVLKLLKSEKNPRAAFALFDSA-TRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEA 127

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT1G07740.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:2399117-2400496 REVERSE LENGTH=459 | 201606)

HSP 1 Score: 67.3958 bits (163), Expect = 1.222e-13
Identity = 36/121 (29.75%), Postives = 66/121 (54.55%), Query Frame = 0

Query:    5 WPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIM 125
            W  V   T L +I    ++P +AL +F+Q +     + H+ P Y+++I  L  S     +  ++  ++  +  C++S+F+  I+ Y K G VD+AI ++  I  F+CV   QS NTL+ ++
Sbjct:   47 WEEVPFLTDLKEI----EDPEEALSLFHQYQEM--GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVL 161

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT5G16420.4 (| Pentatricopeptide repeat (PPR-like) superfamily protein | Chr5:5368034-5369641 FORWARD LENGTH=535 | 201606)

HSP 1 Score: 66.6254 bits (161), Expect = 1.847e-13
Identity = 34/129 (26.36%), Postives = 68/129 (52.71%), Query Frame = 0

Query:    5 WPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQD--SCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRF 131
            WP+ L P +L  +IT Q+N   AL+IF  A   +P ++HN   Y +++  L  +     ++ L+  ++      +C +++F+  ++ Y   G  + ++ ++  IP F      +S NTLL ++ ++ RF
Sbjct:   43 WPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRF 171

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT5G16420.3 (| Pentatricopeptide repeat (PPR-like) superfamily protein | Chr5:5368034-5369641 FORWARD LENGTH=535 | 201606)

HSP 1 Score: 66.6254 bits (161), Expect = 1.847e-13
Identity = 34/129 (26.36%), Postives = 68/129 (52.71%), Query Frame = 0

Query:    5 WPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQD--SCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRF 131
            WP+ L P +L  +IT Q+N   AL+IF  A   +P ++HN   Y +++  L  +     ++ L+  ++      +C +++F+  ++ Y   G  + ++ ++  IP F      +S NTLL ++ ++ RF
Sbjct:   43 WPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRF 171

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT5G16420.2 (| Pentatricopeptide repeat (PPR-like) superfamily protein | Chr5:5368034-5369641 FORWARD LENGTH=535 | 201606)

HSP 1 Score: 66.6254 bits (161), Expect = 1.847e-13
Identity = 34/129 (26.36%), Postives = 68/129 (52.71%), Query Frame = 0

Query:    5 WPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQD--SCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRF 131
            WP+ L P +L  +IT Q+N   AL+IF  A   +P ++HN   Y +++  L  +     ++ L+  ++      +C +++F+  ++ Y   G  + ++ ++  IP F      +S NTLL ++ ++ RF
Sbjct:   43 WPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRF 171

[Close]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Match: AT5G16420.1 (| Pentatricopeptide repeat (PPR-like) superfamily protein | Chr5:5368034-5369641 FORWARD LENGTH=535 | 201606)

HSP 1 Score: 66.6254 bits (161), Expect = 1.847e-13
Identity = 34/129 (26.36%), Postives = 68/129 (52.71%), Query Frame = 0

Query:    5 WPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYATMITILGSSSRLKEMKDLIEQMKQD--SCECKDSIFVSAIKTYAKQGLVDEAILLYKNIPQFNCVNWTQSFNTLLEIMEESIRF 131
            WP+ L P +L  +IT Q+N   AL+IF  A   +P ++HN   Y +++  L  +     ++ L+  ++      +C +++F+  ++ Y   G  + ++ ++  IP F      +S NTLL ++ ++ RF
Sbjct:   43 WPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRF 171

The following BLAST results are available for this feature:

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/Swiss-Prot
BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A392QL66\|A0A392QL66_9FABA	1.573e-78	90.91	Pentatricopeptide repeat-containing protein (Fragm...	[more]
tr\|A0A2K3LFL9\|A0A2K3LFL9_TRIPR	1.509e-76	90.40	Pentatricopeptide repeat-containing protein at1g05...	[more]
tr\|A0A2Z6NVR7\|A0A2Z6NVR7_TRISU	4.440e-75	88.80	PPR_long domain-containing protein OS=Trifolium su...	[more]
tr\|G7JZ89\|G7JZ89_MEDTR	1.112e-74	88.80	PPR containing plant-like protein OS=Medicago trun...	[more]
tr\|A0A1S2Z0B9\|A0A1S2Z0B9_CICAR	8.621e-72	86.40	pentatricopeptide repeat-containing protein At1g05...	[more]
tr\|A0A0B2SHB8\|A0A0B2SHB8_GLYSO	1.613e-68	75.37	Pentatricopeptide repeat-containing protein OS=Gly...	[more]
tr\|A0A0L9VHP6\|A0A0L9VHP6_PHAAN	7.627e-68	72.39	Uncharacterized protein OS=Phaseolus angularis OX=...	[more]
tr\|A0A151RE76\|A0A151RE76_CAJCA	3.069e-67	79.20	Pentatricopeptide repeat-containing protein At1g05...	[more]
tr\|I1L425\|I1L425_SOYBN	1.045e-66	75.00	PPR_long domain-containing protein OS=Glycine max ...	[more]
tr\|V7C3C8\|V7C3C8_PHAVU	1.500e-66	73.88	PPR_long domain-containing protein OS=Phaseolus vu...	[more]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 6


Match Name	E-value	Identity	Description
sp\|Q9SYK1\|PPR11_ARATH	1.410e-49	57.48	Pentatricopeptide repeat-containing protein At1g05...	[more]
sp\|Q9SS81\|PP221_ARATH	3.506e-16	26.77	Pentatricopeptide repeat-containing protein At3g09...	[more]
sp\|Q9LQQ1\|PPR20_ARATH	1.194e-12	29.75	Pentatricopeptide repeat-containing protein At1g07...	[more]
sp\|Q9FFE3\|PP388_ARATH	1.805e-12	26.36	Pentatricopeptide repeat-containing protein At5g16...	[more]
sp\|Q9CA58\|PP120_ARATH	4.635e-12	26.77	Putative pentatricopeptide repeat-containing prote...	[more]
sp\|Q9FNL2\|PP418_ARATH	4.245e-11	22.96	Pentatricopeptide repeat-containing protein At5g46...	[more]

BLAST of Vfaba.Tiffany.R1.5g146920.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 10


Match Name	E-value	Identity	Description
AT1G05600.3	1.442e-50	57.48	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT1G05600.2	1.442e-50	57.48	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT1G05600.1	1.442e-50	57.48	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT3G09060.2	3.586e-17	26.77	\| Pentatricopeptide repeat (PPR) superfamily prote...	[more]
AT3G09060.1	3.586e-17	26.77	\| Pentatricopeptide repeat (PPR) superfamily prote...	[more]
AT1G07740.1	1.222e-13	29.75	\| Tetratricopeptide repeat (TPR)-like superfamily ...	[more]
AT5G16420.4	1.847e-13	26.36	\| Pentatricopeptide repeat (PPR-like) superfamily ...	[more]
AT5G16420.3	1.847e-13	26.36	\| Pentatricopeptide repeat (PPR-like) superfamily ...	[more]
AT5G16420.2	1.847e-13	26.36	\| Pentatricopeptide repeat (PPR-like) superfamily ...	[more]
AT5G16420.1	1.847e-13	26.36	\| Pentatricopeptide repeat (PPR-like) superfamily ...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 8..133 e-value: 1.2E-17 score: 65.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 83..111 e-value: 0.067 score: 13.5 coord: 48..76 e-value: 0.013 score: 15.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 47..78 e-value: 2.4E-4 score: 19.1
IPR044578	Pentatricopeptide repeat-containing protein BIR6-like	PANTHER	PTHR47003	OS01G0970900 PROTEIN	coord: 21..122

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1258765113..1258765666-

mRNA sequence

>Vfaba.Tiffany.R1.5g146920.1_tif_v1 ID=Vfaba.Tiffany.R1.5g146920.1_tif_v1; Name=Vfaba.Tiffany.R1.5g146920.1; organism=Vicia faba; type=mRNA; length=441bp
ATGAGTATAAGGTGGCCAAGAGTGTTAAATCCAACTCAGCTTTCTCAGAT
TATAACAACTCAAAAAAACCCTTTAAAGGCCTTGGAAATTTTCAACCAAG
CCAAATCAAAATACCCTAAATACTCCCACAATGGTCCTATATACGCCACC
ATGATCACCATCCTAGGATCTTCAAGTAGACTCAAAGAGATGAAGGATTT
GATTGAACAAATGAAACAAGATTCATGTGAATGCAAAGATTCAATATTTG
TGTCTGCTATTAAAACATATGCTAAACAAGGGTTAGTAGATGAAGCAATC
TTGCTTTATAAGAACATTCCTCAATTTAACTGTGTGAATTGGACACAATC
TTTCAATACCCTTTTGGAGATAATGGAAGAGTCGATCAGATTTGGCGTTG
CAGATATTTCAAGAGATGGATTATCAAGGTTGTTATACTGA

protein sequence of Vfaba.Tiffany.R1.5g146920.1_tif_v1

>Vfaba.Tiffany.R1.5g146920.1_tif_v1 ID=Vfaba.Tiffany.R1.5g146920.1_tif_v1; Name=Vfaba.Tiffany.R1.5g146920.1_tif_v1; organism=Vicia faba; type=polypeptide; length=146bp
MSIRWPRVLNPTQLSQIITTQKNPLKALEIFNQAKSKYPKYSHNGPIYAT
MITILGSSSRLKEMKDLIEQMKQDSCECKDSIFVSAIKTYAKQGLVDEAI
LLYKNIPQFNCVNWTQSFNTLLEIMEESIRFGVADISRDGLSRLLY

mRNA from alignment at chr5:1258765113..1258765666-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vfaba.Tiffany.R1.5g146920.1_tif_v1 ID=Vfaba.Tiffany.R1.5g146920.1_tif_v1; Name=Vfaba.Tiffany.R1.5g146920.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1258765113..1258765666- (Vicia faba

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_rpt
IPR044578	BIR6-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0008380	RNA splicing

Search form

Vfaba.Tiffany.R1.5g146920.1