Vfaba.Hedin2.R1.2g170840.2
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NAW6|A0A2K3NAW6_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g022879 PE=3 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 1.738e-76 Identity = 143/192 (74.48%), Postives = 154/192 (80.21%), Query Frame = 0 Query: 1 MDMSNYSEYNSESESGWTNYLNHSSFSEEHFNSKS--VDYEDYDGKRATMEEKDEEE---DLSMVSDASSGPPHYHVEEDYQQSYCVNWNDSSSSKESKKKVNEHGRKSQQSSP--LDDTASSHVLNYPKKKISFSGNGVVENNTLDYSPCFSATRTKRKTKFQK------HSFGGKQASEEPGGF-NEERK 178 MDMSNYS+YNSESESGWTNYL+HSSFSE+HFN K+ VDYE ATMEE++EEE DLSMVSDASSGPP+YHVEEDYQQ YCVNWN S+ SKKKV E GRKSQ SS LDDTASS V NYPKKKI+FS NGVVE NTLD SP FSATRTKRKTKFQK HS GGKQAS+EPGGF +EERK Sbjct: 1 MDMSNYSQYNSESESGWTNYLDHSSFSEQHFNRKNGKVDYE------ATMEEEEEEEEEEDLSMVSDASSGPPNYHVEEDYQQPYCVNWNSST----SKKKVKEFGRKSQHSSQSLLDDTASSPVFNYPKKKINFSENGVVE-NTLDSSPSFSATRTKRKTKFQKHSSFLEHSRGGKQASQEPGGFDDEERK 181
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396J114|A0A396J114_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0134941 PE=3 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 6.174e-75 Identity = 141/187 (75.40%), Postives = 156/187 (83.42%), Query Frame = 0 Query: 1 MDMSNYSEYNSESESGWTNYLNHSSFSEEHFNSKSVDYEDYDGKRATMEEKDEEE----DLSMVSDASSGPP-HYHVEEDYQQSYCVNWNDSSSSKESKKKVNEHGRKSQQSSPLDDTASSHVLNYPKKKISFSGNGVVENNTLDYSPCFSATRTKRKTKFQKHSF---GGKQASEEPGGFN-EERK 178 MDMSNYS+YNSESESGWTNYLNHSSFSEEHFN KS DY+GK ATMEE++EEE DLSMVSDASSGPP +YHVEE+YQQ YCVNW+ S+S + KK E+GRKSQQSSPLDDTASS VLNYPK K++FS NG VE NTLD+SP FSATRTKRK+K QKHS GGKQAS+EPGGFN EERK Sbjct: 1 MDMSNYSKYNSESESGWTNYLNHSSFSEEHFNRKSGKM-DYEGKGATMEEEEEEEEEEEDLSMVSDASSGPPQYYHVEENYQQPYCVNWHSSTSKESKKKG-KEYGRKSQQSSPLDDTASSPVLNYPKNKVNFSENGAVE-NTLDFSPSFSATRTKRKSKLQKHSSFLDGGKQASKEPGGFNGEERK 184
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y9J1|A0A1S2Y9J1_CICAR (uncharacterized protein LOC101498288 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101498288 PE=3 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.495e-71 Identity = 136/186 (73.12%), Postives = 149/186 (80.11%), Query Frame = 0 Query: 1 MDMSNYSEYNSESESGWTNYLNHSSFSEEHFNSKSVDYEDYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDY-QQSYCVNWNDSSSSKESKKKVNEHGRKSQQSSPLDDTASSHVLNYPKKKISFSGNGVVENNTLDYSPCFSATR-TKRKTKFQKH------SFGGKQASEEPGGFNEERK 178 MDMSN S+YNSESESGWTNY NHSSFSE+HF+ KS E Y+GK ATMEE++EEEDLSMVSDASSGPPHYHVEEDY QQ YCVNW+ SSS + KK E+GRKSQQ SPLDDTASS VLNYPK K++F GNG VE NTLD+ P FSATR KRKTK QKH S GGKQASEEPGG NEE + Sbjct: 1 MDMSN-SQYNSESESGWTNYFNHSSFSEKHFHRKSGKVE-YEGKGATMEEEEEEEDLSMVSDASSGPPHYHVEEDYQQQPYCVNWHSSSSKESKKKV-KEYGRKSQQPSPLDDTASSPVLNYPKMKVNFPGNGAVE-NTLDFPPSFSATRIIKRKTKLQKHSSFLERSLGGKQASEEPGGCNEEER 182
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YB53|A0A1S2YB53_CICAR (uncharacterized protein LOC101498288 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101498288 PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 6.271e-71 Identity = 135/187 (72.19%), Postives = 149/187 (79.68%), Query Frame = 0 Query: 1 MDMSNYSEYNSESESGWTNYLNHSSFSEEHFNSKSVDYEDYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDY-QQSYCVNWNDSSSSKESKKKVNEHGRKSQQSSPLDDTASSHVLNYPKKKISFSGNGVVENNTLDYSPCFSATRT--KRKTKFQKH------SFGGKQASEEPGGFNEERK 178 MDMSN S+YNSESESGWTNY NHSSFSE+HF+ KS E Y+GK ATMEE++EEEDLSMVSDASSGPPHYHVEEDY QQ YCVNW+ SSS + KK E+GRKSQQ SPLDDTASS VLNYPK K++F GNG VE NTLD+ P FSATR +RKTK QKH S GGKQASEEPGG NEE + Sbjct: 1 MDMSN-SQYNSESESGWTNYFNHSSFSEKHFHRKSGKVE-YEGKGATMEEEEEEEDLSMVSDASSGPPHYHVEEDYQQQPYCVNWHSSSSKESKKKV-KEYGRKSQQPSPLDDTASSPVLNYPKMKVNFPGNGAVE-NTLDFPPSFSATRIIKQRKTKLQKHSSFLERSLGGKQASEEPGGCNEEER 183
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445K4U0|A0A445K4U0_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_013748 PE=3 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 3.292e-67 Identity = 123/190 (64.74%), Postives = 140/190 (73.68%), Query Frame = 0 Query: 1 MDMSNYSEYNSESESGWTNYLNHSSFSEEHFNSKSVDYEDYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDYQQSYCVNWNDSSS--SKESK----KKVNEHGRKSQQSSPLDDTASSHVLNYPKKKISFSGNGVVENNTLDYSPCFSATRTKRKTKFQKH------SFGGKQASEEPGGFNEERK 178 MD+S+ S+YNS ESGWT YL+HSS SE +F + EDY GK AT+EE EEEDLSM+SDASSGPPHYH ED Q+YCVNW S+S +KES+ KKV E+G Q SSPLDDTASS VLN PKKK SFSGNG VE N +D+ PCFS TR KRK+KFQKH S GGKQASEEPGGF+E RK Sbjct: 1 MDISS-SQYNSAGESGWTRYLDHSSLSESYFQRRG-GIEDYGGKGATLEE--EEEDLSMISDASSGPPHYH--EDDDQNYCVNWYPSTSHYTKESENNKNKKVKEYGNNQQPSSPLDDTASSPVLNCPKKKASFSGNGAVE-NAVDFPPCFSGTRIKRKSKFQKHFSFFERSLGGKQASEEPGGFDEGRK 183
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|K7KT44|K7KT44_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100801392 PE=3 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 3.292e-67 Identity = 123/190 (64.74%), Postives = 140/190 (73.68%), Query Frame = 0 Query: 1 MDMSNYSEYNSESESGWTNYLNHSSFSEEHFNSKSVDYEDYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDYQQSYCVNWNDSSS--SKESK----KKVNEHGRKSQQSSPLDDTASSHVLNYPKKKISFSGNGVVENNTLDYSPCFSATRTKRKTKFQKH------SFGGKQASEEPGGFNEERK 178 MD+S+ S+YNS ESGWT YL+HSS SE +F + EDY GK AT+EE EEEDLSM+SDASSGPPHYH ED Q+YCVNW S+S +KES+ KKV E+G Q SSPLDDTASS VLN PKKK SFSGNG VE N +D+ PCFS TR KRK+KFQKH S GGKQASEEPGGF+E RK Sbjct: 1 MDISS-SQYNSAGESGWTRYLDHSSLSESYFQRRG-GIEDYGGKGATLEE--EEEDLSMISDASSGPPHYH--EDDDQNYCVNWYPSTSHYTKESENNKNKKVKEYGNNQQPSSPLDDTASSPVLNCPKKKASFSGNGAVE-NAVDFPPCFSGTRIKRKSKFQKHFSFFERSLGGKQASEEPGGFDEGRK 183
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2SEF0|A0A0B2SEF0_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_031364 PE=3 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 2.601e-63 Identity = 120/196 (61.22%), Postives = 138/196 (70.41%), Query Frame = 0 Query: 1 MDMSNYSEYNSESESGWTNYLNHSSFSEEHFNSKSVDYEDYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDYQQSYCVNWNDSSS--SKESK----KKVNEHGRKSQQSSPLDDTASSHVLNYPKKK------ISFSGNGVVENNTLDYSPCFSATRTKRKTKFQKH------SFGGKQASEEPGGFNEERK 178 MD+S+ S+YNS ESGWT YL+HSS SE +F + EDY GK AT+EE EEEDLSM+SDASSGPPHYH ED Q+YCVNW S+S +KES+ KKV E+G Q SSPLDDTASS VLN PK + FSGNG VE N +D+ PCFS TR KRK+KFQKH S GGKQASEEPGGF+E RK Sbjct: 1 MDISS-SQYNSAGESGWTRYLDHSSLSESYFQRRG-GIEDYGGKGATLEE--EEEDLSMISDASSGPPHYH--EDDDQNYCVNWYPSTSHYTKESENNKNKKVKEYGNNQQPSSPLDDTASSPVLNCPKASQNAIVIVIFSGNGAVE-NAVDFPPCFSGTRIKRKSKFQKHFSFFERSLGGKQASEEPGGFDEGRK 189
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7XRL6|A0A3Q7XRL6_CICAR (uncharacterized protein LOC101498288 isoform X3 OS=Cicer arietinum OX=3827 GN=LOC101498288 PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 1.081e-52 Identity = 105/148 (70.95%), Postives = 117/148 (79.05%), Query Frame = 0 Query: 40 DYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDYQQ-SYCVNWNDSSSSKESKKKVNEHGRKSQQSSPLDDTASSHVLNYPKKKISFSGNGVVENNTLDYSPCFSATRT--KRKTKFQKH------SFGGKQASEEPGGFNEERK 178 +Y+GK ATMEE++EEEDLSMVSDASSGPPHYHVEEDYQQ YCVNW+ SSS + KK E+GRKSQQ SPLDDTASS VLNYPK K++F GNG VE NTLD+ P FSATR +RKTK QKH S GGKQASEEPGG NEE + Sbjct: 8 EYEGKGATMEEEEEEEDLSMVSDASSGPPHYHVEEDYQQQPYCVNWHSSSSKESKKKV-KEYGRKSQQPSPLDDTASSPVLNYPKMKVNFPGNGAVE-NTLDFPPSFSATRIIKQRKTKLQKHSSFLERSLGGKQASEEPGGCNEEER 153
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|A0A072V2F1|A0A072V2F1_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25489977 PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 4.042e-52 Identity = 108/148 (72.97%), Postives = 122/148 (82.43%), Query Frame = 0 Query: 40 DYDGKRATMEEKDEEE----DLSMVSDASSGPP-HYHVEEDYQQSYCVNWNDSSSSKESKKKVNEHGRKSQQSSPLDDTASSHVLNYPKKKISFSGNGVVENNTLDYSPCFSATRTKRKTKFQKHSF---GGKQASEEPGGFN-EERK 178 DY+GK ATMEE++EEE DLSMVSDASSGPP +YHVEE+YQQ YCVNW+ S+S + KK E+GRKSQQSSPLDDTASS VLNYPK K++FS NG VE NTLD+SP FSATRTKRK+K QKHS GGKQAS+EPGGFN EERK Sbjct: 2 DYEGKGATMEEEEEEEEEEEDLSMVSDASSGPPQYYHVEENYQQPYCVNWHSSTSKESKKKG-KEYGRKSQQSSPLDDTASSPVLNYPKNKVNFSENGAVE-NTLDFSPSFSATRTKRKSKLQKHSSFLDGGKQASKEPGGFNGEERK 147
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Match: tr|I1K875|I1K875_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100801392 PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.395e-51 Identity = 100/157 (63.69%), Postives = 115/157 (73.25%), Query Frame = 0 Query: 1 MDMSNYSEYNSESESGWTNYLNHSSFSEEHFNSKSVDYEDYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDYQQSYCVNWNDSSS--SKESK----KKVNEHGRKSQQSSPLDDTASSHVLNYPKKKISFSGNGVVENNTLDYSPCFSATRTK 151 MD+S+ S+YNS ESGWT YL+HSS SE +F + EDY GK AT+EE EEEDLSM+SDASSGPPHYH ED Q+YCVNW S+S +KES+ KKV E+G Q SSPLDDTASS VLN PKKK SFSGNG VE N +D+ PCFS TR K Sbjct: 1 MDISS-SQYNSAGESGWTRYLDHSSLSESYFQRRG-GIEDYGGKGATLEE--EEEDLSMISDASSGPPHYH--EDDDQNYCVNWYPSTSHYTKESENNKNKKVKEYGNNQQPSSPLDDTASSPVLNCPKKKASFSGNGAVE-NAVDFPPCFSGTRIK 150
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q8L9K4|SOFL5_ARATH (Protein SOB FIVE-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=SOFL5 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.677e-12 Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 0 Query: 11 SESESGWTNYLNHS-------SFSEEH-FNSKSVDYEDYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDYQQSYCVNWNDSSSSKESKKKVNEHGRKSQQSSPLDDTASSHVLNYP-KKKISFSGNGVVEN---NTLDYSPCFSATRTKRKTKFQKH 159 S ESGWT YL+ S F + + F+S+ + +D EE++EE+DLSM+SDASSGP + EED + + +E K++ E + +S LDDTASS + N+P + S GN + + +TLDYS FSAT+ + KT FQ+ Sbjct: 6 SGCESGWTLYLDQSVSSPSPSCFRDSNGFDSRRRSKDSWDQNYVHQEEEEEEDDLSMISDASSGPRNIS-EEDSVKKINIVGLKKQCKREKKRRDYE-----KMNSLLDDTASSPLFNFPHMLQKSVGGNKIEQTFPESTLDYSQGFSATQFQDKTAFQEQ 160
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. Araport11
Match: AT4G33800.2 (| hypothetical protein | Chr4:16210404-16211307 REVERSE LENGTH=170 | 201606) HSP 1 Score: 64.3142 bits (155), Expect = 3.762e-13 Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 0 Query: 11 SESESGWTNYLNHS-------SFSEEH-FNSKSVDYEDYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDYQQSYCVNWNDSSSSKESKKKVNEHGRKSQQSSPLDDTASSHVLNYP-KKKISFSGNGVVEN---NTLDYSPCFSATRTKRKTKFQKH 159 S ESGWT YL+ S F + + F+S+ + +D EE++EE+DLSM+SDASSGP + EED + + +E K++ E + +S LDDTASS + N+P + S GN + + +TLDYS FSAT+ + KT FQ+ Sbjct: 6 SGCESGWTLYLDQSVSSPSPSCFRDSNGFDSRRRSKDSWDQNYVHQEEEEEEDDLSMISDASSGPRNIS-EEDSVKKINIVGLKKQCKREKKRRDYE-----KMNSLLDDTASSPLFNFPHMLQKSVGGNKIEQTFPESTLDYSQGFSATQFQDKTAFQEQ 160
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. Araport11
Match: AT4G33800.1 (| hypothetical protein | Chr4:16210404-16211307 REVERSE LENGTH=170 | 201606) HSP 1 Score: 64.3142 bits (155), Expect = 3.762e-13 Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 0 Query: 11 SESESGWTNYLNHS-------SFSEEH-FNSKSVDYEDYDGKRATMEEKDEEEDLSMVSDASSGPPHYHVEEDYQQSYCVNWNDSSSSKESKKKVNEHGRKSQQSSPLDDTASSHVLNYP-KKKISFSGNGVVEN---NTLDYSPCFSATRTKRKTKFQKH 159 S ESGWT YL+ S F + + F+S+ + +D EE++EE+DLSM+SDASSGP + EED + + +E K++ E + +S LDDTASS + N+P + S GN + + +TLDYS FSAT+ + KT FQ+ Sbjct: 6 SGCESGWTLYLDQSVSSPSPSCFRDSNGFDSRRRSKDSWDQNYVHQEEEEEEDDLSMISDASSGPRNIS-EEDSVKKINIVGLKKQCKREKKRRDYE-----KMNSLLDDTASSPLFNFPHMLQKSVGGNKIEQTFPESTLDYSQGFSATQFQDKTAFQEQ 160 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 1
BLAST of Vfaba.Hedin2.R1.2g170840.2 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 2
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.2g170840.2_vfh_v1 ID=Vfaba.Hedin2.R1.2g170840.2_vfh_v1; Name=Vfaba.Hedin2.R1.2g170840.2; organism=Vicia faba; type=mRNA; length=537bpback to top protein sequence of Vfaba.Hedin2.R1.2g170840.2_vfh_v1 >Vfaba.Hedin2.R1.2g170840.2_vfh_v1 ID=Vfaba.Hedin2.R1.2g170840.2_vfh_v1; Name=Vfaba.Hedin2.R1.2g170840.2_vfh_v1; organism=Vicia faba; type=polypeptide; length=178bpback to top mRNA from alignment at chr2:1069540340..1069541106+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.2g170840.2_vfh_v1 ID=Vfaba.Hedin2.R1.2g170840.2_vfh_v1; Name=Vfaba.Hedin2.R1.2g170840.2; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1069540340..1069541106+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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