Vfaba.Hedin2.R1.4g053480.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|I3SWC2|I3SWC2_MEDTR (Putative photosystem I OS=Medicago truncatula OX=3880 GN=25500606 PE=2 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 4.570e-79 Identity = 125/157 (79.62%), Postives = 140/157 (89.17%), Query Frame = 0
Query: 12 NLFDCKAPFQPSPSSPQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGSK 168
N FDCKA FQ S SSPQC+ L+SLPSLPLLSQNHA+KT+ H+RKI R+VMVMATGDAP +V+STELPEFVK+LQ WDK DD+YAVS+LVVASV ALWS TGLISAID+LPLIPGVLELIGIGY+GWF YKN+VFKPEREELIQKVKET+ IIGS
Sbjct: 15 NHFDCKASFQSSTSSPQCVSLSSLPSLPLLSQNHALKTT-HHRKIARDVMVMATGDAPTEVDSTELPEFVKNLQEAWDKYDDRYAVSSLVVASVFALWSLTGLISAIDRLPLIPGVLELIGIGYTGWFAYKNVVFKPEREELIQKVKETITAIIGSN 170
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151R866|A0A151R866_CAJCA (CAAD domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_039900 PE=4 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 2.145e-70 Identity = 104/156 (66.67%), Postives = 125/156 (80.13%), Query Frame = 0
Query: 13 LFDCKAPFQPSPSSPQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGSK 168
L D KAP Q +SPQC+ SLP PL S N + KTS++ RK+ R VM MATG+APA+V +TE PEFVK+LQ WDKVDDKYAVS+L VA VIALW S GLISAID+LPLIPGVLE++GIGY+GWF YKN+VFKP+RE L++K+KET NEI+GS
Sbjct: 16 LLDAKAPRQSPAASPQCV---SLPPPPLHSHNRSWKTSTYCRKVARNVMAMATGEAPAEVATTETPEFVKTLQEAWDKVDDKYAVSSLAVAGVIALWGSVGLISAIDRLPLIPGVLEVVGIGYTGWFAYKNIVFKPDREALVRKIKETYNEILGSN 168
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Z4H6|A0A1S2Z4H6_CICAR (protein CURVATURE THYLAKOID 1B, chloroplastic-like OS=Cicer arietinum OX=3827 GN=LOC101512812 PE=4 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 6.623e-70 Identity = 112/142 (78.87%), Postives = 129/142 (90.85%), Query Frame = 0
Query: 27 PQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVEST-ELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
PQC+ L SLPSL LLS NHA+KT+SHYRKIGR V+VMATG+APA+V S+ E+PEFVK+LQ TWDKVDDKYAVS+LVVASVIALW STGLISAID+LPLIPGVLEL+GIGY+GWF YKNLVFKPEREEL+Q V++ + EIIGS
Sbjct: 24 PQCVSLPSLPSLHLLSHNHALKTTSHYRKIGRNVVVMATGEAPAEVSSSDEVPEFVKTLQETWDKVDDKYAVSSLVVASVIALWGSTGLISAIDRLPLIPGVLELVGIGYTGWFAYKNLVFKPEREELLQNVQKAITEIIGS 165
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|V7ART7|V7ART7_PHAVU (CAAD domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G120100g PE=4 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 1.061e-69 Identity = 103/156 (66.03%), Postives = 127/156 (81.41%), Query Frame = 0
Query: 13 LFDCKAPFQPSPSSPQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGSK 168
LFD KAP Q P+SPQC+ SLP L SQN + KT+++ KI R VM MATG+APA+ STE+PE VK+LQ TWDKVDDKYAVS+LV+A V+ALW S GLISAID+LPLIPG+LE++GIGY+GWF YKN+VFKP+RE L+Q+VK+T NEI+GS
Sbjct: 16 LFDGKAPRQSPPASPQCL---SLPLPHLHSQNRSWKTTAYNGKIARNVMAMATGEAPAEASSTEVPEIVKTLQETWDKVDDKYAVSSLVLAGVVALWGSVGLISAIDRLPLIPGILEIVGIGYTGWFVYKNIVFKPDREALVQQVKDTYNEILGSN 168
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5N5F3X4|A0A5N5F3X4_9ROSA (Protein CURVATURE THYLAKOID 1B OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_031350 PE=4 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 3.387e-69 Identity = 100/153 (65.36%), Postives = 122/153 (79.74%), Query Frame = 0
Query: 15 DCKAPFQPSPSSPQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
D KAP + SSPQC+ L SLP P+ SQNHA KT+++ RK R VM MATG+APA+V TELPE VK++Q W+KV+DKYAVS+L VA +ALW STGLISAID+LPL+PGVLEL+GIGY+GWF YKNLV+KP+RE L QK+K T +IIGS
Sbjct: 18 DAKAPRHSAASSPQCVTLPSLPPPPVHSQNHAGKTTAYCRKFARNVMAMATGEAPAEVAVTELPEIVKTVQEAWEKVEDKYAVSSLAVAGAVALWGSTGLISAIDRLPLVPGVLELVGIGYTGWFAYKNLVYKPDREALTQKIKATYKDIIGS 170
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A540MFF1|A0A540MFF1_MALBA (CAAD domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_016926 PE=4 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 4.968e-69 Identity = 100/153 (65.36%), Postives = 122/153 (79.74%), Query Frame = 0
Query: 15 DCKAPFQPSPSSPQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
D KAP + SSPQC+ L SLP P+ SQNHA KT+++ RK R VM MATG+APA+V TELPE VK++Q W+KV+DKYAVS+L VA +ALW STGLISAID+LPL+PGVLEL+GIGY+GWF YKNLV+KP+RE L QK+K T +IIGS
Sbjct: 18 DTKAPRHSAASSPQCVTLPSLPPPPVHSQNHAGKTTAYCRKFARNVMAMATGEAPAEVAVTELPEIVKTVQEAWEKVEDKYAVSSLAVAGAVALWGSTGLISAIDRLPLVPGVLELVGIGYTGWFAYKNLVYKPDREALTQKIKATYKDIIGS 170
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A7J6F6Z4|A0A7J6F6Z4_CANSA (CAAD domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_003721 PE=4 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 1.081e-68 Identity = 102/171 (59.65%), Postives = 133/171 (77.78%), Query Frame = 0
Query: 1 MASISSSSLT----TNLFDCKAPFQPSPSSPQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
MAS S+S+LT + D KAP Q + +SPQC+ L +LP P+ +Q K++++ RK+ R V+ MATG+APA+V + E PE ++++Q WDKV+DKYAVS+L VA V+ALW STG+ISAID+LPLIPGVLEL+GIGYSGWF YKNLVFKP+RE L+QKVK+T EIIGS
Sbjct: 1 MASSSTSALTISSSSTFVDTKAPRQSAGASPQCVSLPTLPPPPVQTQKRPWKSTAYCRKLARNVIAMATGEAPAEVATAETPEIIQTVQEAWDKVEDKYAVSSLAVAGVVALWGSTGMISAIDRLPLIPGVLELVGIGYSGWFAYKNLVFKPDREALLQKVKDTYKEIIGS 171
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VU34|A0A1S3VU34_VIGRR (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106778165 PE=4 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.452e-68 Identity = 105/156 (67.31%), Postives = 123/156 (78.85%), Query Frame = 0
Query: 13 LFDCKAPFQPSPSSPQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGSK 168
LFD KAP P SPQC+ SLP SQN + KT+++ KI R VM MATG+APA+ STE+PE VK+LQ TWDKVDDKYAVS+LV+ VIALW S GLISAID+LPLIPGVLE++GIGY+GWF YKN+VFKP+RE LIQKVKET NEI+GS
Sbjct: 16 LFDGKAPRHSPPLSPQCV---SLPLPNFHSQNRSWKTTAYNGKIARNVMAMATGEAPAEASSTEVPEIVKTLQETWDKVDDKYAVSSLVLVGVIALWGSIGLISAIDRLPLIPGVLEIVGIGYTGWFVYKNIVFKPDRENLIQKVKETYNEILGSN 168
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P6AY11|A0A6P6AY11_DURZI (protein CURVATURE THYLAKOID 1B, chloroplastic-like OS=Durio zibethinus OX=66656 GN=LOC111313362 PE=4 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.712e-68 Identity = 98/156 (62.82%), Postives = 127/156 (81.41%), Query Frame = 0
Query: 12 NLFDCKAPFQPSPSSPQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
L D K+P Q + +S QC+ L +LP LP+ SQ+ KT+++ RKI R +M MATG+APA+V +TELPE VK++Q TWDKV+DKYAVS+L VA V+ALW STGLISAID+LPLIPG+LEL+GIGYSGWF YKNL+F+P+RE L+QK+K+ EIIG+
Sbjct: 16 TLVDAKSPRQTTAASLQCVTLPTLPPLPVHSQSRPWKTTAYCRKIARNMMAMATGEAPAEVATTELPEIVKTIQETWDKVEDKYAVSSLAVAGVVALWGSTGLISAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALVQKIKDKYKEIIGN 171
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Match: tr|I1KHN6|I1KHN6_SOYBN (CAAD domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_07G049000 PE=4 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 3.301e-68 Identity = 101/155 (65.16%), Postives = 125/155 (80.65%), Query Frame = 0
Query: 13 LFDCKAPFQPSPSSPQCMRLTSLPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
L D KAP Q +SPQC+ SLP PL SQN + KT+++ RK+ R+VM MATG+APA+ TE+PE VK+LQ TWDKVDDKYAVS+L + VIALW S GLISAID+LPLIPG+LE++GIGY+GWF YKN+VFKP+RE L++KVKET NEI+GS
Sbjct: 16 LLDGKAPRQSPAASPQCV---SLPPPPLHSQNRSWKTTAYCRKVARKVMAMATGEAPAEATPTEVPEIVKTLQETWDKVDDKYAVSSLALVGVIALWGSVGLISAIDRLPLIPGILEIVGIGYTGWFVYKNIVFKPDREALVRKVKETYNEILGS 167
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8LCA1|CUT1B_ARATH (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 2.389e-46 Identity = 79/139 (56.83%), Postives = 102/139 (73.38%), Query Frame = 0
Query: 35 LPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDA------PADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
LP+LP+ S A K +++ RKI R V+ AT + + E+TELPE VK+ Q W+KVDDKYA+ +L A V+ALW S G+ISAID+LPL+PGVLEL+GIGY+GWFTYKNLVFKP+RE L +KVK T +I+GS
Sbjct: 35 LPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M812|CUT1C_ARATH (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.734e-25 Identity = 49/107 (45.79%), Postives = 76/107 (71.03%), Query Frame = 0
Query: 60 VMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIG 166
+MV A+G++ ST+L + V ++Q WDK +D+ + L A ++ALW+S LI+AIDKLP+I EL+GI +S WFTY+ L+FKP+R+EL + VK++V +I+G
Sbjct: 52 LMVKASGESSD--SSTDL-DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/Swiss-Prot
Match: sp|O04616|CUT1A_ARATH (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.367e-19 Identity = 36/111 (32.43%), Postives = 70/111 (63.06%), Query Frame = 0
Query: 58 REVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGSK 168
++V ++ T + + S + E + L+ WD +++K V +++A+W S+ ++ AI+ +PL+P V+EL+G+GY+GWF Y+ L+FK R+EL + ++ +I GS+
Sbjct: 54 QKVELLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8LDD3|CUT1D_ARATH (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.297e-15 Identity = 35/102 (34.31%), Postives = 66/102 (64.71%), Query Frame = 0
Query: 67 DAP-ADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
+AP A+ E T+ EF+ ++ DK Y++ +++AL+ ++ ++S+++ +PL P ++E++G+GY+ WFT + L+FK REEL KV E +++GS
Sbjct: 92 EAPQAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGS 190
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Match: AT2G46820.2 (| photosystem I P subunit | Chr2:19243729-19244870 FORWARD LENGTH=174 | 201606) HSP 1 Score: 152.525 bits (384), Expect = 2.444e-47 Identity = 79/139 (56.83%), Postives = 102/139 (73.38%), Query Frame = 0
Query: 35 LPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDA------PADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
LP+LP+ S A K +++ RKI R V+ AT + + E+TELPE VK+ Q W+KVDDKYA+ +L A V+ALW S G+ISAID+LPL+PGVLEL+GIGY+GWFTYKNLVFKP+RE L +KVK T +I+GS
Sbjct: 35 LPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Match: AT2G46820.1 (| photosystem I P subunit | Chr2:19243729-19244870 FORWARD LENGTH=174 | 201606) HSP 1 Score: 152.525 bits (384), Expect = 2.444e-47 Identity = 79/139 (56.83%), Postives = 102/139 (73.38%), Query Frame = 0
Query: 35 LPSLPLLSQNHAVKTSSHYRKIGREVMVMATGDA------PADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
LP+LP+ S A K +++ RKI R V+ AT + + E+TELPE VK+ Q W+KVDDKYA+ +L A V+ALW S G+ISAID+LPL+PGVLEL+GIGY+GWFTYKNLVFKP+RE L +KVK T +I+GS
Sbjct: 35 LPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Match: AT1G52220.1 (| CURVATURE THYLAKOID protein | Chr1:19453770-19454605 REVERSE LENGTH=156 | 201606) HSP 1 Score: 98.5969 bits (244), Expect = 1.774e-26 Identity = 49/107 (45.79%), Postives = 76/107 (71.03%), Query Frame = 0
Query: 60 VMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIG 166
+MV A+G++ ST+L + V ++Q WDK +D+ + L A ++ALW+S LI+AIDKLP+I EL+GI +S WFTY+ L+FKP+R+EL + VK++V +I+G
Sbjct: 52 LMVKASGESSD--SSTDL-DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Match: AT1G52220.2 (| CURVATURE THYLAKOID protein | Chr1:19453770-19454605 REVERSE LENGTH=155 | 201606) HSP 1 Score: 94.7449 bits (234), Expect = 5.866e-25 Identity = 49/107 (45.79%), Postives = 76/107 (71.03%), Query Frame = 0
Query: 60 VMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIG 166
+MV A+G++ ST+L + V ++Q WDK +D+ + L A ++ALW+S LI+AIDKLP+I EL+GI +S WFTY+ L+FKP+R+EL + VK++V +I+G
Sbjct: 52 LMVKASGESSD--SSTDL-DVVSTIQ-NWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 154
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Match: AT4G01150.1 (| CURVATURE THYLAKOID 1A-like protein | Chr4:493692-494668 FORWARD LENGTH=164 | 201606) HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-20 Identity = 36/111 (32.43%), Postives = 70/111 (63.06%), Query Frame = 0
Query: 58 REVMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGSK 168
++V ++ T + + S + E + L+ WD +++K V +++A+W S+ ++ AI+ +PL+P V+EL+G+GY+GWF Y+ L+FK R+EL + ++ +I GS+
Sbjct: 54 QKVELLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Match: AT4G38100.1 (| CURVATURE THYLAKOID 1D-like protein | Chr4:17887033-17888177 REVERSE LENGTH=193 | 201606) HSP 1 Score: 72.7886 bits (177), Expect = 3.374e-16 Identity = 35/102 (34.31%), Postives = 66/102 (64.71%), Query Frame = 0
Query: 67 DAP-ADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
+AP A+ E T+ EF+ ++ DK Y++ +++AL+ ++ ++S+++ +PL P ++E++G+GY+ WFT + L+FK REEL KV E +++GS
Sbjct: 92 EAPQAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGS 190
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Match: AT4G38100.2 (| CURVATURE THYLAKOID 1D-like protein | Chr4:17887033-17887811 REVERSE LENGTH=153 | 201606) HSP 1 Score: 70.8626 bits (172), Expect = 7.005e-16 Identity = 35/102 (34.31%), Postives = 66/102 (64.71%), Query Frame = 0
Query: 67 DAP-ADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIGS 167
+AP A+ E T+ EF+ ++ DK Y++ +++AL+ ++ ++S+++ +PL P ++E++G+GY+ WFT + L+FK REEL KV E +++GS
Sbjct: 52 EAPQAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGS 150
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Match: AT1G52220.3 (| CURVATURE THYLAKOID protein | Chr1:19453770-19454605 REVERSE LENGTH=127 | 201606) HSP 1 Score: 65.4698 bits (158), Expect = 4.709e-14 Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query: 117 AIDKLPLIPGVLELIGIGYSGWFTYKNLVFKPEREELIQKVKETVNEIIG 166
AIDKLP+I EL+GI +S WFTY+ L+FKP+R+EL + VK++V +I+G
Sbjct: 77 AIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 126
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Match: AT1G52220.4 (| CURVATURE THYLAKOID protein | Chr1:19453978-19454605 REVERSE LENGTH=143 | 201606) HSP 1 Score: 60.8474 bits (146), Expect = 4.419e-12 Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 0
Query: 60 VMVMATGDAPADVESTELPEFVKSLQATWDKVDDKYAVSTLVVASVIALWSSTGLISAIDKLPLIPGVLELIGIGYS 136
+MV A+G++ ST+L + V ++Q WDK +D+ + L A ++ALW+S LI+AIDKLP+I EL+GI +S
Sbjct: 52 LMVKASGESSD--SSTDL-DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFS 125 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 4
BLAST of Vfaba.Hedin2.R1.4g053480.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 9
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.4g053480.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g053480.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g053480.1; organism=Vicia faba; type=mRNA; length=507bpback to top protein sequence of Vfaba.Hedin2.R1.4g053480.1_vfh_v1 >Vfaba.Hedin2.R1.4g053480.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g053480.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g053480.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=168bpback to top mRNA from alignment at chr4:324395565..324396754+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.4g053480.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g053480.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g053480.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:324395565..324396754+ (Vicia fababack to top |