Vfaba.Hedin2.R1.4g232840.1

Transcript Overview
NameVfaba.Hedin2.R1.4g232840.1
Unique NameVfaba.Hedin2.R1.4g232840.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length1776
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:1584149765..1584154006 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR421Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL624Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL431Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0549Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL557Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL856Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL512Pisum sativum Cameor genome v1aPisum sativum
tifvfhL312Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR531Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL609Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL617Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0776Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR510Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR475Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR499Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL383Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL637Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL379Cicer arietinum
ccavfhL618Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR580Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR515Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL286Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR558Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL838Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR491Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan04g258100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Cc_v2.0_14882.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_024471Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.02G001600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_14394.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_014646642.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun09g277600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
PvulFLAVERTChr09.805Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
XM_058929749.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat05G0002100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vum_02G00015.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.009G117301.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_04693Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg13403.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigan.02G001500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va04G072930.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun09g277600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_004500652.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_14662.1Cicer arietinum ICC 4958 genome v2Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.4g178720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g232840Vfaba.Hedin2.R1.4g232840_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-exonVfaba.Hedin2.R1.4g232840.1_vfh_v1-exon-chr4_vfh_v1:1584149765..1584149849Vicia fabaexon
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-exonVfaba.Hedin2.R1.4g232840.1_vfh_v1-exon-chr4_vfh_v1:1584149928..1584150031Vicia fabaexon
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-exonVfaba.Hedin2.R1.4g232840.1_vfh_v1-exon-chr4_vfh_v1:1584150198..1584150914Vicia fabaexon
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-exonVfaba.Hedin2.R1.4g232840.1_vfh_v1-exon-chr4_vfh_v1:1584151617..1584151847Vicia fabaexon
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-exonVfaba.Hedin2.R1.4g232840.1_vfh_v1-exon-chr4_vfh_v1:1584152337..1584152477Vicia fabaexon
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-exonVfaba.Hedin2.R1.4g232840.1_vfh_v1-exon-chr4_vfh_v1:1584153410..1584153610Vicia fabaexon
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-exonVfaba.Hedin2.R1.4g232840.1_vfh_v1-exon-chr4_vfh_v1:1584153710..1584154006Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-cdsVfaba.Hedin2.R1.4g232840.1_vfh_v1-cds-chr4_vfh_v1:1584149765..1584149849Vicia fabaCDS
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-cdsVfaba.Hedin2.R1.4g232840.1_vfh_v1-cds-chr4_vfh_v1:1584149928..1584150031Vicia fabaCDS
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-cdsVfaba.Hedin2.R1.4g232840.1_vfh_v1-cds-chr4_vfh_v1:1584150198..1584150914Vicia fabaCDS
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-cdsVfaba.Hedin2.R1.4g232840.1_vfh_v1-cds-chr4_vfh_v1:1584151617..1584151847Vicia fabaCDS
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-cdsVfaba.Hedin2.R1.4g232840.1_vfh_v1-cds-chr4_vfh_v1:1584152337..1584152477Vicia fabaCDS
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-cdsVfaba.Hedin2.R1.4g232840.1_vfh_v1-cds-chr4_vfh_v1:1584153410..1584153610Vicia fabaCDS
Vfaba.Hedin2.R1.4g232840.1_vfh_v1-cdsVfaba.Hedin2.R1.4g232840.1_vfh_v1-cds-chr4_vfh_v1:1584153710..1584154006Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g232840.1_vfh_v1Vfaba.Hedin2.R1.4g232840.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.4g232840.1_vfh_v1Vfaba.Hedin2.R1.4g232840.1_vfh_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y7P9|A0A1S2Y7P9_CICAR (RNA polymerase sigma factor OS=Cicer arietinum OX=3827 GN=LOC101489429 PE=3 SV=1)

HSP 1 Score: 729.169 bits (1881), Expect = 0.000e+0
Identity = 427/607 (70.35%), Postives = 477/607 (78.58%), Query Frame = 0 
Query:    1 MSCFLPHFN----TFTTPIPIPTNRHHHIIL-QIKLR-----RPHCILSPSAPST-ALLEFDAA------NTP-WSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSEDAVIAENFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQPVFRPQLPSAPENLLLKWVQHMEAQDAVAEG-SVATGLEIMEHVDNTSTQEE----EPTFEELEDIDKELLDSIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            MSC LP FN    TF TP+P  T+RHH I+L Q K R     RP CILS + PST AL++FD A      N+P W YV                                              +FKA SSAESLLT+E+A IA AASEAL LAKAAAK+AKDA LLVK  P Q+  F+ QLPS P+N LLKWVQHMEAQ+AVA G SV+ G EI+E VD +  QEE    EPT EELE+ +++L DSIDARSGRQTERKARR+RASGKAATNIVSF+SGSTSRK+RVRTQ+VDYSDPLRYLRT TR+++LLT +EEI  S GIQDLIKLEKLQ++L EKCG +PTF QWAT+AGVDQKTLRKRLNYG  CKEKMIKSNIRLVISVAKNYQ SGMSLQDLVQEGCRGLV+GAEKYDASKGFKFSTYAHWWIKQAV KALS QSR IRLPF++V ATYKV+EARKQLYSENGRQPDD+E+AEATGLSMK L+AV L PK+PRSLE+KIGINQSLKPSEVL+ PEAETAEEQLIKQ MKKDLEKVLD LNPRE+QVIRWRFGMDDGRMK LQEIGEM+GVSRER+RQIE C F KLKN+KRAKHL+QY+
Sbjct:    1 MSCLLPQFNCHPDTFRTPLP--THRHHLILLLQTKTRHNLYFRPQCILSAAPPSTSALIDFDVAAAAAAANSPNWPYVAQ-------------------------------------------AHFKATSSAESLLTNEEAVIAAAASEALTLAKAAAKVAKDAALLVKKKPLQEAGFKSQLPSTPDNFLLKWVQHMEAQEAVAGGGSVSNGAEILEDVDISPNQEELDEEEPTCEELENSEEQLSDSIDARSGRQTERKARRVRASGKAATNIVSFKSGSTSRKRRVRTQEVDYSDPLRYLRTTTRTTRLLTPAEEIKYSEGIQDLIKLEKLQDDLVEKCGGEPTFGQWATLAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKALSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQSLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPRERQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYL 562
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445KTM8|A0A445KTM8_GLYSO (RNA polymerase sigma factor OS=Glycine soja OX=3848 GN=D0Y65_008340 PE=3 SV=1)

HSP 1 Score: 689.108 bits (1777), Expect = 0.000e+0
Identity = 375/604 (62.09%), Postives = 450/604 (74.50%), Query Frame = 0 
Query:    1 MSCFLPHFN----TF-TTPIPIPTN---RHHHIILQIKLRRPHCILSPSAPSTAL-----LEFDAA---NTPWSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSEDAVIAENFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQPVFRPQLPSAPENLLLKWVQHME-AQDAVAEGSVATGLEIMEHVDNTSTQEE---EPTFEELEDIDKELLDSIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            MSC LPHFN    TF T P  +PT+      ++  Q     P C+LS ++PST L     L  DA    NT W Y+ +                    ++   +A                 NFK+  SAESLLT+E+A I  AASEALALAKAAAK+AKDA LLVK  PP +  ++  + S  ++LLLKW + ME  +D VAE S+  G EIME VD + ++EE   EP+ EELE + ++L DSI  RS RQTERKA+R+RA+ KA TN  SF+ GS+SR+KRV  Q+VDYSDPLRYLRT T +S+LLT +EEI LSAGIQDL+KLEK+QE+L E+ GSQPTF+QWA +AGVDQKTLRKRLNYG  CK+KMIKSNIRLVIS+AKNYQ SGM+LQDLVQEGCRGLVKGAEK+D +KGFKFSTYAHWWIKQAV K+LSDQSR IRLPF++V ATY+V+EARKQLYSENGRQPDD+E+AEATGLSMK L AV + PK+PRSLE+KIGINQ+LKPSEV+S P+AETAEEQL+KQ MKKDLE+ LD LNPRE+QV+RWRFGMDDGR K LQEIGEM+GVSRER+RQIE   F KLKN+KR  HL+QY+
Sbjct:    1 MSCLLPHFNCHLDTFRTHPYALPTHLSKTRPNLCFQ-----PQCVLSATSPSTLLSLEKKLALDAPSDPNTSWPYIAA--------------------VSPPLQA-----------------NFKSTLSAESLLTNEEAVIVAAASEALALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDGVAEESMGAGAEIMEGVDVSPSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYL 562
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|K7KHD7|K7KHD7_SOYBN (RNA polymerase sigma factor OS=Glycine max OX=3847 GN=100788815 PE=3 SV=1)

HSP 1 Score: 689.108 bits (1777), Expect = 0.000e+0
Identity = 375/604 (62.09%), Postives = 450/604 (74.50%), Query Frame = 0 
Query:    1 MSCFLPHFN----TF-TTPIPIPTN---RHHHIILQIKLRRPHCILSPSAPSTAL-----LEFDAA---NTPWSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSEDAVIAENFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQPVFRPQLPSAPENLLLKWVQHME-AQDAVAEGSVATGLEIMEHVDNTSTQEE---EPTFEELEDIDKELLDSIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            MSC LPHFN    TF T P  +PT+      ++  Q     P C+LS ++PST L     L  DA    NT W Y+ +                    ++   +A                 NFK+  SAESLLT+E+A I  AASEALALAKAAAK+AKDA LLVK  PP +  ++  + S  ++LLLKW + ME  +D VAE S+  G EIME VD + ++EE   EP+ EELE + ++L DSI  RS RQTERKA+R+RA+ KA TN  SF+ GS+SR+KRV  Q+VDYSDPLRYLRT T +S+LLT +EEI LSAGIQDL+KLEK+QE+L E+ GSQPTF+QWA +AGVDQKTLRKRLNYG  CK+KMIKSNIRLVIS+AKNYQ SGM+LQDLVQEGCRGLVKGAEK+D +KGFKFSTYAHWWIKQAV K+LSDQSR IRLPF++V ATY+V+EARKQLYSENGRQPDD+E+AEATGLSMK L AV + PK+PRSLE+KIGINQ+LKPSEV+S P+AETAEEQL+KQ MKKDLE+ LD LNPRE+QV+RWRFGMDDGR K LQEIGEM+GVSRER+RQIE   F KLKN+KR  HL+QY+
Sbjct:    1 MSCLLPHFNCHLDTFRTHPYALPTHLSKTRPNLCFQ-----PQCVLSATSPSTLLSLEKKLALDAPSDPNTSWPYIAA--------------------VSPPLQA-----------------NFKSTLSAESLLTNEEAVIVAAASEALALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDGVAEESMGAGAEIMEGVDVSPSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYL 562
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4P1QY15|A0A4P1QY15_LUPAN (RNA_pol_sigma70 domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_12289 PE=3 SV=1)

HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 374/574 (65.16%), Postives = 438/574 (76.31%), Query Frame = 0 
Query:   20 NRHHHIILQIKLRRPHCILSPS--APSTALLEFDAANTPWSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSEDAVIAE--NFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQPVFRPQLPSAPEN--LLLKWVQHMEAQDAVAEGSVATGLEIMEHVDNTSTQEE---EPTFEELEDIDKELLDSIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            N H H++ Q+ L  PH  L P     ST+LL         +Y                        A  F+       +L     +I +  NFK   S ESLLTSE+  IA AASEA+ALAKAA K+AK A LLVK+  P +  + P   S+  +  LLLKWVQH+EAQ+   +G V+ G EIMEHV N   +E    EPT+EELE + ++L DSI  RS RQTERKA+R+RA+ K+AT +VSF+SGSTSRKKRV TQ+VDYSDPLRYLR  T +S+LLT SEEI LS GIQDL+KLEKLQE+LTE+CGSQPTF+QWA +AGVDQKTLRKRLNYG  CK+KMIKSNIRLVIS+AK YQ +GM+LQDLVQEGCRGLV+GAEK+DASKGFKFSTYAHWWIKQAV K+LSDQSR IRLPF++V ATY+V+EARKQLYSENGRQPDD+E+AEATGLSMK L+AV L PK+PRSLE+KIGI+Q+LKPSEV++ PEAETAEEQLIKQ MKKDLEKVLD LNPREKQVIRWRFGMDDGRMK LQEIGE +GVSRERVRQIE C F KLKN+KR KHL+QY+
Sbjct:   82 NWHFHLLHQLILIHPHFFLLPHRFHSSTSLLYLSIIMLIINYS----------------------YARRFRYIKFVLKILIIVMPIITKQTNFKGTLSTESLLTSEENVIAAAASEAVALAKAALKVAKVAALLVKNKSPPEAAYTPSNDSSKSDNLLLLKWVQHLEAQE---DGVVSAGAEIMEHVYNDIKEESDDAEPTYEELERLHQQLSDSIAVRSTRQTERKAKRVRAAEKSATPMVSFKSGSTSRKKRVPTQEVDYSDPLRYLRATTSTSRLLTPSEEIELSEGIQDLLKLEKLQEDLTERCGSQPTFAQWAAVAGVDQKTLRKRLNYGMFCKDKMIKSNIRLVISIAKGYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGESMGVSRERVRQIESCAFRKLKNKKRTKHLQQYL 630
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|G7J988|G7J988_MEDTR (RNA polymerase sigma factor OS=Medicago truncatula OX=3880 GN=11419288 PE=3 SV=1)

HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0
Identity = 354/448 (79.02%), Postives = 390/448 (87.05%), Query Frame = 0 
Query:  148 LLVKDNPPQQPVFRPQLPSAPENLLLKWVQHMEAQDAVAEG-SVATGL---EIMEHVDNTSTQEE------EPTFEELEDIDKELLD-SIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            LLV +  PQ     PQLPS PENLLLKWVQHMEA +  A   S+ATG    +IMEH+  +  QE+      EPT EELED++++L D SIDARSGRQTERKARR+RASGKAATNIVSFRSGST+RKKRVRTQ+VDYSDPLRYLRT TR+++LLT SEEI  S GIQDLIKLEKLQE+L EKCG QPTF+QWATMAGVDQKTLRKRLNYG  CKEKMIKSNIRLVISVAKNYQ SGMSLQDLVQEGCRGLV+GAEKYDASKGFKFSTYAHWWIKQAV K+LS QSR IRLPF++V ATYKV+EARKQLYSENGRQPDD+E+AEATGLSMK L+AV L PK+PRSLE+K+GINQSLK SEVL+ PEAETAEEQLIKQ MKKDLEKVLD LNPREKQVI+WRFGMDDGRMK LQEIGEM+GVSRER+RQIE C F KLKN+KRAKHL+QY 
Sbjct:  123 LLVNNKLPQHNQQPPQLPSTPENLLLKWVQHMEAAEYAAAAVSIATGPAGPDIMEHLHISPNQEDDFNDDDEPTSEELEDVEEQLYDTSIDARSGRQTERKARRVRASGKAATNIVSFRSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTTSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYF 570
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445K2Q3|A0A445K2Q3_GLYSO (RNA polymerase sigma factor OS=Glycine soja OX=3848 GN=D0Y65_013320 PE=3 SV=1)

HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0
Identity = 364/601 (60.57%), Postives = 439/601 (73.04%), Query Frame = 0 
Query:    1 MSCFLPHFN----TF-TTPIPIPTNRHHHIILQIKL-RRPHCILSPSAPSTAL-----LEFDAA---NTPWSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSEDAVIAENFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQPVFRPQLPSAPENLLLKWVQHMEAQDAVAEGSVATGLEIMEHVDNTSTQEE---EPTFEELEDIDKELLDSIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            MSC LPHFN    TF T P  +PT   H    ++ L  +P C+LS ++PST L     L  DA    NT W Y+ +             +      +  +FK+  SAESLLT+E+AVIA     A +                      AKAA K+AKDA LLVK  PP +  ++  + S  ++LLLKW   MEA+D VAE S+  G EIME VD + ++EE   EP+ EELE + + L D+I  RS R TERKA+R+RA+ KA TN  S + GS+SR+KRV  Q+VDYSDPLRYLRT T +S+LLT +EEI LSAGIQDL+KLEK+QE+L E+ G QPTF+QWA +AGVDQKTLRKRLNYG  CK+KMIKSNIRLVIS+AKNYQ SGM+LQDLVQEGCRGLVKGAEK+D +KGFKFSTYAHWWIKQAV K+LSDQSR IRLPF++V ATY+V+EARKQLYSENGRQPDD+E+AEATGLSMK L AV + PK+PRSLE+KIGINQ+LKPSEV+S P+AETAEEQL+KQ MKKDLE+ LD LN RE+QV+RWRFGMDDGR K LQEIGEM+GVSRER+RQIE   F KLKN+KR  HL+QY+
Sbjct:    1 MSCLLPHFNCHLDTFRTHPYALPT---HPSKTRLNLCFQPQCVLSATSPSTLLSLEKKLALDAPSDPNTSWPYIAA-------------VAPPSPHLKANFKSTLSAESLLTNEEAVIAAAASEALAL---------------------AKAAVKVAKDAVLLVKKKPPAEAEYKSHVSSKSDDLLLKWFHQMEAEDGVAEESMGAGAEIMEGVDISPSEEESDLEPSHEELECLQERLSDNIAVRSRRLTERKAKRVRAAEKATTNFASLKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNARERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYL 564
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4PQC9|A0A6A4PQC9_LUPAL (RNA polymerase sigma factor OS=Lupinus albus OX=3870 GN=Lal_00001756 PE=3 SV=1)

HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 350/485 (72.16%), Postives = 407/485 (83.92%), Query Frame = 0 
Query:  107 NFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQPVFRPQLPSAPEN--LLLKWVQHMEAQDAVAEGSVATGLEIME--HVD-NTSTQEEEPTFEELEDIDKELL--DSIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            NFKA  S ESLLTSE+  IA AASEA+ALAKAA K+AK A LLVK+  P +  + P   S+  +  LLLKWVQH+EAQ+   +G V+   +I E  ++D    + + EPT+EELE + + L   D+I  RS RQTERKA+R+RA+ K+AT +VSF+SGSTSRKKRV TQ+VDYSDPLRYLR  T +SKLLT SEEI LS GIQDL+KLEKLQE+LTE+CGSQPTF+QWA +AGVDQKTLRKRLNYG  CK+KMIKSNIRLVIS+AK YQ +GM+LQDLVQEGCRGLV+GAEK+DASKGFKFSTYAHWWIKQAV K+LSDQSR IRLPF++V ATY+V+EARKQLYSENGRQPDD+E+AEATGLSMK L AV L PK+PRSLE+KIGI+Q+LKPSEV++ PEA TAEEQLIKQ MKKDLEKVLD LNPREKQVIRWRFGMDDGRMK LQEIGE +GVSRERVRQIE C F KLKN+KR KHL+QY+
Sbjct:   80 NFKATLSTESLLTSEENVIAAAASEAVALAKAALKVAKVAALLVKNKSPPEAAYTPSHDSSKSDNLLLLKWVQHLEAQE---DGVVSAASQITEDVYIDIKEESDDAEPTYEELEPLHQHLSESDNIAVRSTRQTERKAKRVRAAEKSATPMVSFKSGSTSRKKRVPTQEVDYSDPLRYLRATTSTSKLLTPSEEIELSEGIQDLLKLEKLQEDLTERCGSQPTFAQWAAVAGVDQKTLRKRLNYGMFCKDKMIKSNIRLVISIAKGYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLLTPKAPRSLEQKIGIDQNLKPSEVIADPEAVTAEEQLIKQFMKKDLEKVLDTLNPREKQVIRWRFGMDDGRMKTLQEIGESMGVSRERVRQIEACAFRKLKNKKRTKHLQQYL 561
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NPY7|A0A2Z6NPY7_TRISU (RNA_pol_sigma70 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_310770 PE=3 SV=1)

HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0
Identity = 311/402 (77.36%), Postives = 354/402 (88.06%), Query Frame = 0 
Query:  188 GSVATGLEIMEHVDNTSTQEEE-----PTFEELEDIDKELLDSIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            GS+ATG EI++ V+    QEEE     PT EELED +++L DSID RSGRQTERKARR+RA+GKAATN+VSF+ GST RKKRVRTQ+V  SDPLRYLR+ATR+++LLT SEE+ LS GIQDL+KLEKLQE+L EKCG QPTF QWATMAGVDQKTLRKRL+YG  CKEKM+KSNIRLVISVAKNYQ SGMSLQDLVQEGCRGLV+GAEK+DASKGFKFSTYAHWWIKQA+ K+L+ QSR IRLPF +V A YKV+EARKQLY ENGRQPDD+E+AEA G+SMK L+AV L PK+P+SLE KIGINQSLKPS+VL+ PEA+TAEE+L+KQ MKKDLEKVLD LN REKQVIRWRFGMDDGRMK LQEIGEM+GVSRER+RQIE C F KLKN+KRAKHL+QYM
Sbjct:   11 GSMATGSEIIQEVEIIPAQEEEFDDEEPTIEELEDAEEQLSDSIDVRSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVASSDPLRYLRSATRATRLLTASEEVKLSGGIQDLLKLEKLQEDLAEKCGGQPTFDQWATMAGVDQKTLRKRLDYGVFCKEKMLKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAIRKSLNVQSRTIRLPFYMVGAAYKVKEARKQLYRENGRQPDDEEVAEAAGMSMKRLSAVLLTPKAPKSLETKIGINQSLKPSDVLADPEAQTAEEKLVKQFMKKDLEKVLDSLNLREKQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIEACAFRKLKNKKRAKHLQQYM 412
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4B029|A0A6P4B029_ZIZJJ (RNA polymerase sigma factor OS=Ziziphus jujuba OX=326968 GN=LOC107428976 PE=3 SV=1)

HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0
Identity = 357/622 (57.40%), Postives = 433/622 (69.61%), Query Frame = 0 
Query:    1 MSCFLPHFNT--------FTTPIPIPTNRHHHIILQIKLRRPHCILSPSAPSTAL-------LE------FDA------ANTPWSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSEDAVIAENFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQP----VFRPQLPSAPENLLLKWVQHMEAQDAVAEGSVATGLEIMEHVDNTSTQ-------EEEPTFEELEDIDKELLDSIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            MSC LP F          F T +P P +             PHCILS S+PST++       LE       DA      AN PW+Y  +                    I    KA                 N +A  + E+LLTSE+A IA AA+EA+ LAKAA K+AKDATLL+ +NP  +     +F P+     + L LKW QHM+    V  G  + G +  + +D+ S Q       + EPT EELE +  +L + I  RS RQTERKARR RA+ KAA  +VS +SGST RKKR   Q +D+SDPLRYLR  T +S+LLT +EEI LS GIQDL+KLEKLQEELTE+CGSQPTF+QWA  AGVDQKTLR+R+NYG  CK+KMIKSNIRLVIS+AKNYQ +GM+LQDLVQEGCRGLV+GAEK+DASKGFKFSTYAHWWIKQAV K+LSDQSR IRLPF++V ATY+V+EARKQLYS+NGR PDD+E+AEATGLSMK L AV L PK+PRSLE+KIGINQ+LKPSEV++ P+AET+E+ LI++ MK+DL+KVLD LNPREKQVIRWRFGM+DGRMK LQEIGE++GVSRER+RQIE C F KLKN+KR KHL+QY+
Sbjct:    1 MSCLLPQFKCQPDTFSIHFRTHLPKPRDSISSW--------PHCILSTSSPSTSMATTTVLNLEKLRLPSLDANSDSVTANRPWTYTGA--------------------IGPPAKA-----------------NLEATLATETLLTSEEAVIAAAAAEAVTLAKAAVKVAKDATLLINNNPCTRAESTSLFSPE----DDALHLKWPQHMKTGQPVRLGD-SMGPKTAQ-LDDYSMQCAIKEADDLEPTHEELELLQSQLSNGIAVRSRRQTERKARRTRAAEKAAATVVSVKSGSTVRKKRASLQDIDHSDPLRYLRATTSTSRLLTATEEIELSEGIQDLLKLEKLQEELTERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 571
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RA77|A0A0S3RA77_PHAAN (RNA polymerase sigma factor OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G001500 PE=3 SV=1)

HSP 1 Score: 647.506 bits (1669), Expect = 0.000e+0
Identity = 362/603 (60.03%), Postives = 442/603 (73.30%), Query Frame = 0 
Query:    1 MSCFLPHFNTFTTPIPIPTNRHHHIILQIKLRR--------PHCILSPSAPSTAL-----LEFDAA---NTPWSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSEDAVIAENFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQPVFRPQLPSAPENLLLKWVQHMEAQDAVAEGSVATGLEIMEHVDNTSTQEE---EPTFEELEDIDKELLDSIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            MSC LPHFN       + T R+H   L   L R        P C+LSP++ ST L     L  DA    NT W YVT+                    +A   +A                 NFK+  S ESLLT+E+A IA AASEALALAKAA K+AKDA LLVK  P  +  ++  + S  ++L LKW QHM+ ++ VA  S+  G E++E VD + ++EE   EP+ EELE + ++L +SI  RS RQ ERKA+R RA+ KA+TN+ SF+ GS+SR+KRV  Q++DYSDPLRYLRT T +S+LLT +EEI LS GIQDL+KLE+LQE+L E+CG QPTF+QWA +AGVDQKTLRKRLNYG  CK+KMIKSNIRLVIS+AKNYQ SGM+LQDLVQEGCRGLVKGAEK+D +KGFKFSTYAHWWIKQAV K+LSDQSR IRLPF++V ATY+V+EARKQL S NGRQPDD+E+AEATGLSMK LTAV L PK+PRSLE+KIGINQ+LKPSE++S P+AE+AEEQL+KQ MKKDL++ LD L+ RE+QV+RWRFGMDDGR K LQEIGEM+GVSRER+RQIE   F KLKN+KR KH +QY+
Sbjct:    1 MSCLLPHFNCH-----LDTFRNHPSALPTHLSRTRSNFCFQPQCLLSPTSSSTLLNLEKKLVLDAPSDPNTSWPYVTA--------------------VAPPTQA-----------------NFKSTLSTESLLTNEEAVIAAAASEALALAKAAVKVAKDAALLVKKKPQAESEYKSHVSSKSDDLFLKWFQHMDVENGVAGESMGAGAEMVEGVDLSPSEEESDVEPSHEELERLQEQLSNSIAVRSKRQPERKAKRDRAAEKASTNVASFKPGSSSRRKRVSVQEIDYSDPLRYLRTTTMTSRLLTSTEEIKLSEGIQDLLKLERLQEDLVERCGGQPTFAQWAAVAGVDQKTLRKRLNYGRFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSANGRQPDDEEVAEATGLSMKRLTAVLLTPKAPRSLEQKIGINQNLKPSEIISDPDAESAEEQLLKQFMKKDLQEALDSLSSRERQVVRWRFGMDDGRTKTLQEIGEMMGVSRERIRQIESSAFKKLKNKKRTKHFQQYL 561
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|O22056|SIGB_ARATH (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 317/601 (52.75%), Postives = 405/601 (67.39%), Query Frame = 0 
Query:    2 SCFLPHFNT--------FTTPIPIPTNRHHHIILQIKLRRPHCILSPS-APSTALLEFDAANTPWSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSEDAVIAE-NFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQPVFRPQLPSAPENLLLKWVQHMEAQDAVAEGSVATGLEIMEHVDNTSTQEEEPTFEELEDIDKELLD--------SIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            SC LP F          F T    P +    +  Q     P C +S S A  T++L+      P                 S  T  D++I       S  +   T  D    E  +  A ++E+LLTS++A +  AA+EA+ALA+AA K+AKDATL    N          L S+  +   KW Q  E + A   G +A     +     T++   + +  +LE   +E ++        S+  RS RQTERKARR +   K A+ I S ++GS+ +KKR+  Q+VD++DPLRYLR  T SSKLLTV EE  LSAGIQDL+KLE+LQ ELTE+ G QPTF+QWA+ AGVDQK+LR+R+++G  CK+KMIKSNIRLVIS+AKNYQ +GM+LQDLVQEGCRGLV+GAEK+DA+KGFKFSTYAHWWIKQAV K+LSDQSR+IRLPF++V ATY+V+EARKQLYSE G+ P ++EIAEATGLSMK L AV L+PK PRSL++KIG+NQ+LKPSEV++ PEA T+E+ LIK+ M++DL+KVLD L  REKQVIRWRFGM+DGRMK LQEIGEM+GVSRERVRQIE   F KLKN+KR  HL+QY+
Sbjct:    3 SCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQ-----PQCAVSTSPALLTSMLDVAKLRLP-----------------SFDTDSDSLI-------SDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNL------LTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|P26683|SIGA_NOSS1 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.095e-85
Identity = 145/343 (42.27%), Postives = 224/343 (65.31%), Query Frame = 0 
Query:  244 SGKAATNIVSFRSGSTSRKKRVRTQQVDYS-DPLR-YLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            SGKAA +           ++R ++++  Y+ D +R YL+   R  +LL   EEI L+  I DL++LE+++E L+EK    P  S+WA    +     R RL+ G R K+KM++SN+RLV+S+AK Y   G+S QDL+QEG  GL++ AEK+D  KG+KFSTYA WWI+QA+ +A++DQSR IRLP +L     ++++  K L  E GR+P ++EIA    ++++ L  +  + + P SLE  IG  +  +  + + + + ET E+Q+ K L+++DLEKVLD L+PRE+ V+R R+G+DDGRMK L+EIG++  V+RER+RQIE     KL++  R   L++Y+
Sbjct:   60 SGKAAKS-----------RRRTQSKKKHYTEDSIRLYLQEIGRI-RLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIES-DGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|P38023|SIGA1_SYNE7 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 3.247e-77
Identity = 129/298 (43.29%), Postives = 199/298 (66.78%), Query Frame = 0 
Query:  287 KLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            +LL   EEI L+  I DL+ LE++++EL E+    P+ ++WA          R+RL  G R K+KM++SN+RLV+S+AK Y   G+S QDL+QEG  GL++ AEK+D  KG+KFSTYA WWI+QA+ +A++DQSR IRLP +L     ++++  K L  E GR+P ++EIA    ++++ L  +  + + P SLE  IG  +  +  + + A + ET E+++ K L+++DLE VL  L+PRE+ V+R R+G+DDGRMK L+EIG++  V+RER+RQIE     KL++  R   L++Y+
Sbjct:  102 RLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|P52322|SIGA_MICAE (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 4.140e-74
Identity = 131/337 (38.87%), Postives = 201/337 (59.64%), Query Frame = 0 
Query:  287 KLLTVSEEINLSAGIQDLIKLEKLQEE----------------------LTEKCGSQPTFSQWATMAGVDQKT-----------------LRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            +LL   EEI L+  I DL+KLE+++E+                      + EK   +P  S      G  + T                  ++RL +G R KEKM++SN+RLV+S+AK Y   G+S QDL+QEG  GL++ AEK+D  KG+KFSTYA WWI+QA+ +A++DQSR IRLP +L     ++++  K L  E  R+P ++EIA    ++++ L  +  + + P SLE  IG  +  +  + + A + ET E+++ K L+++DLE VLD L+PRE+ V+R R+G+DDGRMK L+EIG++  V+RER+RQIE     KL++  R   L++Y+
Sbjct:   80 RLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEA-DGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LD95|SIGF_ARATH (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.590e-73
Identity = 131/359 (36.49%), Postives = 207/359 (57.66%), Query Frame = 0 
Query:  228 ARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYMNL 586
             RS RQ ER+A+  RA      +   +    TS KK+ + Q  D  D L+       + +LLT  EE  L + IQ L+KLEK++ +L  + G +PT  +WA   G+    L+  ++ G   +EK+I +N+RLV+ +AK YQ  G++ QDL+QEG  GL+K  EK+    G +F+TYA+WWI+Q++ K++   SR IRLP N+     KV EARK    E   +P  +E+A   G+S + L  +    ++P S+++ I  +Q     E+      ET    + KQLM+  +  +L+ L+P+E+++I+ RFG+D G+ ++L EIGE+ G+S+ERVRQ+E     +LK    +  L  Y +L
Sbjct:  188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADL 545
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|P74565|SIGA_SYNY3 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 4.700e-69
Identity = 134/357 (37.54%), Postives = 208/357 (58.26%), Query Frame = 0 
Query:  274 DPLR-YLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRL------------------------------------NYG---------ERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            D +R YL+   R  +LL   EEI L+  I DL++LE +++ LT +   QP+  +W        +T ++RL                                    N+           R K+KM++SN+RLV+S+AK Y   G+S QDL+QEG  GL++ AEK+D  KG+KFSTYA WWI+QA+ +A++DQSR IRLP +L     ++++  K L  E  R+P ++EIAE   ++++ L  +  + + P SLE  IG  +  +  + + A + ET E+++ K L+++DLE VLD L+PRE+ V+R R+G+DDGRMK L+EIG++  V+RER+RQIE     KL++  R   L++Y+
Sbjct:   71 DSIRIYLQEIGRI-RLLRAEEEIELARQIADLLELELIRDNLTLQLERQPSELEWGKQVW-KLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEA-DGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 424
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q31QG5|SIGA3_SYNE7 (RNA polymerase sigma factor SigA3 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA3 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.452e-63
Identity = 115/303 (37.95%), Postives = 193/303 (63.70%), Query Frame = 0 
Query:  273 SDPLR-YLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQ-PTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKN 573
            SD +R YLR   R   LLT  EE+ L   +Q  +KL++L++ L  + G + P+  +WA  AG+  + LR++ + GE+ K KMI++N+RLV+SVAK Y K  M L DL+QEG  G+ +G EK+D +KG++FSTYA+WWI+QA+ +A+++++R IRLP ++     K+++ ++QL  + GR     E+A A  L+   +       + P SL+ ++G NQ  +  ++L   +  T EE  ++  M++D++++LD L  +++QVI  R+G++DG++  L  IG+ + +SRERVRQ+E      L+ 
Sbjct:    9 SDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTELGDLLET-DCTTPEEFTLQASMRRDIDRLLDQLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLEREALHTLRQ 309
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|P9WGI5|SIGB_MYCTU (RNA polymerase sigma factor SigB OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=sigB PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.720e-62
Identity = 100/239 (41.84%), Postives = 155/239 (64.85%), Query Frame = 0 
Query:  345 GERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQY 583
            GE  +  ++++N+RLV+S+AK Y   GM L DL+QEG  GL++  EK+D +KGFKFSTYA WWI+QA+ + ++DQSR IRLP +LV    K+   +++++   GR+  D+E+A  +G+ +  +  +    + P SL+  +G  +     + +   EA +AE  +I +L+  D+  VL  L+ RE QVIR RFG+DDG+ + L +IG++ G+SRERVRQIE    SKL++ +RA  L  Y
Sbjct:   83 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 321
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|P9WGI4|SIGB_MYCTO (RNA polymerase sigma factor SigB OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=sigB PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.720e-62
Identity = 100/239 (41.84%), Postives = 155/239 (64.85%), Query Frame = 0 
Query:  345 GERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQY 583
            GE  +  ++++N+RLV+S+AK Y   GM L DL+QEG  GL++  EK+D +KGFKFSTYA WWI+QA+ + ++DQSR IRLP +LV    K+   +++++   GR+  D+E+A  +G+ +  +  +    + P SL+  +G  +     + +   EA +AE  +I +L+  D+  VL  L+ RE QVIR RFG+DDG+ + L +IG++ G+SRERVRQIE    SKL++ +RA  L  Y
Sbjct:   83 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 321
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q31ME3|SIGA2_SYNE7 (RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA2 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.093e-62
Identity = 112/303 (36.96%), Postives = 183/303 (60.40%), Query Frame = 0 
Query:  278 YLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVL----SAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKR 576
            YL+   R  +LLT  EE+     +Q L+ L   Q EL ++ G +P+  +WA    ++ + L +++  G+R K KMI++N+RLV+S+AK YQK  M   DL+QEG  GL +G EK+D SKG+KFSTYA+WWI+QA+ +A++ QSR IRLP ++     K+++ +++L  + GR     E+AE   L ++ +       + P SL+ K+G +Q  +  E+L    S+P     +E L     ++DL  ++  L P+++ VI  R+G+D+G   +L ++GE + +SRERVR++E      L+ R R
Sbjct:   16 YLQEIGRV-RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSPSDYVEQESL-----RRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSR 312
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT1G08540.1 (| RNApolymerase sigma subunit 2 | Chr1:2703461-2706696 FORWARD LENGTH=572 | 201606)

HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 317/601 (52.75%), Postives = 405/601 (67.39%), Query Frame = 0 
Query:    2 SCFLPHFNT--------FTTPIPIPTNRHHHIILQIKLRRPHCILSPS-APSTALLEFDAANTPWSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSEDAVIAE-NFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLVKDNPPQQPVFRPQLPSAPENLLLKWVQHMEAQDAVAEGSVATGLEIMEHVDNTSTQEEEPTFEELEDIDKELLD--------SIDARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            SC LP F          F T    P +    +  Q     P C +S S A  T++L+      P                 S  T  D++I       S  +   T  D    E  +  A ++E+LLTS++A +  AA+EA+ALA+AA K+AKDATL    N          L S+  +   KW Q  E + A   G +A     +     T++   + +  +LE   +E ++        S+  RS RQTERKARR +   K A+ I S ++GS+ +KKR+  Q+VD++DPLRYLR  T SSKLLTV EE  LSAGIQDL+KLE+LQ ELTE+ G QPTF+QWA+ AGVDQK+LR+R+++G  CK+KMIKSNIRLVIS+AKNYQ +GM+LQDLVQEGCRGLV+GAEK+DA+KGFKFSTYAHWWIKQAV K+LSDQSR+IRLPF++V ATY+V+EARKQLYSE G+ P ++EIAEATGLSMK L AV L+PK PRSL++KIG+NQ+LKPSEV++ PEA T+E+ LIK+ M++DL+KVLD L  REKQVIRWRFGM+DGRMK LQEIGEM+GVSRERVRQIE   F KLKN+KR  HL+QY+
Sbjct:    3 SCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQ-----PQCAVSTSPALLTSMLDVAKLRLP-----------------SFDTDSDSLI-------SDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNL------LTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT2G36990.1 (| RNApolymerase sigma-subunit F | Chr2:15537502-15540016 REVERSE LENGTH=547 | 201606)

HSP 1 Score: 246.514 bits (628), Expect = 6.742e-74
Identity = 131/359 (36.49%), Postives = 207/359 (57.66%), Query Frame = 0 
Query:  228 ARSGRQTERKARRLRASGKAATNIVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYMNL 586
             RS RQ ER+A+  RA      +   +    TS KK+ + Q  D  D L+       + +LLT  EE  L + IQ L+KLEK++ +L  + G +PT  +WA   G+    L+  ++ G   +EK+I +N+RLV+ +AK YQ  G++ QDL+QEG  GL+K  EK+    G +F+TYA+WWI+Q++ K++   SR IRLP N+     KV EARK    E   +P  +E+A   G+S + L  +    ++P S+++ I  +Q     E+      ET    + KQLM+  +  +L+ L+P+E+++I+ RFG+D G+ ++L EIGE+ G+S+ERVRQ+E     +LK    +  L  Y +L
Sbjct:  188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADL 545
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT3G53920.1 (| RNApolymerase sigma-subunit C | Chr3:19961041-19963820 REVERSE LENGTH=571 | 201606)

HSP 1 Score: 206.068 bits (523), Expect = 1.288e-58
Identity = 101/293 (34.47%), Postives = 191/293 (65.19%), Query Frame = 0 
Query:  294 EINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENG-RQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYMN 585
            E  +S G++ +  +E+++ +L E+ G   + S WA  AG+++K L + L+YG  C+++++KS   LV+ +A+NY+  G++ +DL+Q G  G+++GAE++D ++G+KFSTY  +WI++++   +S  +R + +P +++R    +++ARK L + +G +   D+EIA+ TG S+K + A     K   S+++K+G   + K  E       E+ EE +++Q  ++D+  +L+ L PREKQV+  R+G+ D R K+L+EIG+++ VS+E +R+IE    +KL+++  A+ L  Y+N
Sbjct:  278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT5G13730.1 (| sigma factor 4 | Chr5:4429132-4430744 REVERSE LENGTH=419 | 201606)

HSP 1 Score: 174.096 bits (440), Expect = 3.482e-48
Identity = 102/298 (34.23%), Postives = 170/298 (57.05%), Query Frame = 0 
Query:  286 SKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQY 583
            S  L+  EE+ L   +++  KLE L   + E   ++      A+  G  +++  + L   +  +EK+ +   RLV+S+A  YQ  G++LQDL+QEG  GL++GAE++D  +G+K STY +WWIKQA+ +A++ +SR+++LP ++   T KV EA   L  +  RQP  +EIAE   L++  +       +SP SL+R    N  +   E++  P+    EE + ++ MK ++E++L  L  RE +V+   FG++     + +EIG+ + +SRERVRQI      KL+N      L+ Y
Sbjct:  120 SGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT1G64860.1 (| sigma factor A | Chr1:24098497-24100746 FORWARD LENGTH=502 | 201606)

HSP 1 Score: 160.229 bits (404), Expect = 1.525e-42
Identity = 115/351 (32.76%), Postives = 184/351 (52.42%), Query Frame = 0 
Query:  238 ARRLRASGKAATNIVSFRSGS-TSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQ-----LIKQLMKKDLEKVLDC-LNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLE 581
            AR+ R   K  TN+   ++ S  S  K+VR           Y++    S  +L+  E + LS  I+  ++L+  +  L ++ G +P+  Q A    + +  L+  L      +EK+  SN+RLV+S+A+ Y   G  + DLVQ G  GL++G EK+D+SKGF+ STY +WWI+Q V +AL D SR +RLP +L      +R A+ +L  E G  P    IAE+  +S K +     A     SL+R    + +  P E   +  A+T  E           +K+++ K++   L  REK++IR  +G+D   +   ++I + IG+SRERVRQ+ L    KLK+  R + +E
Sbjct:  159 ARQRRIGAKKKTNMTHVKAVSDVSSGKQVRG----------YVKGVI-SEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKME 496
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT1G64860.2 (| sigma factor A | Chr1:24098497-24100739 FORWARD LENGTH=498 | 201606)

HSP 1 Score: 135.961 bits (341), Expect = 4.959e-34
Identity = 99/309 (32.04%), Postives = 159/309 (51.46%), Query Frame = 0 
Query:  238 ARRLRASGKAATNIVSFRSGS-TSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQ-----LIKQLMKKDLEKVLDC-LNPREKQVIRWRFGMD 539
            AR+ R   K  TN+   ++ S  S  K+VR           Y++    S  +L+  E + LS  I+  ++L+  +  L ++ G +P+  Q A    + +  L+  L      +EK+  SN+RLV+S+A+ Y   G  + DLVQ G  GL++G EK+D+SKGF+ STY +WWI+Q V +AL D SR +RLP +L      +R A+ +L  E G  P    IAE+  +S K +     A     SL+R    + +  P E   +  A+T  E           +K+++ K++   L  REK++IR  +G+D
Sbjct:  159 ARQRRIGAKKKTNMTHVKAVSDVSSGKQVRG----------YVKGVI-SEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD 455
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT5G24120.3 (| sigma factor E | Chr5:8157794-8159746 REVERSE LENGTH=517 | 201606)

HSP 1 Score: 134.806 bits (338), Expect = 1.605e-33
Identity = 87/300 (29.00%), Postives = 155/300 (51.67%), Query Frame = 0 
Query:  288 LLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQK---SGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            +L+ +E   L   +Q +  L ++++ L +  G +P  ++ A    +    ++K++  G   + K+IK N+RLV+ V   Y     +G   QDL Q G RGL+   ++++  + F+ STY  +WI+ A+ ++++  S   R+PF L     ++ +A+ +L+ E GR P + E+ E   ++ +    V  A K   SL  K  + Q    + +    +   A       L++  L+ VLD L P+E  VIR R+G+D    + L EI   + +SRE VR+ E+    KLK++ R  +L QY+
Sbjct:  219 VLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMT-TSNFTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDV-DGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYI 516
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT5G24120.2 (| sigma factor E | Chr5:8157794-8159746 REVERSE LENGTH=517 | 201606)

HSP 1 Score: 134.806 bits (338), Expect = 1.605e-33
Identity = 87/300 (29.00%), Postives = 155/300 (51.67%), Query Frame = 0 
Query:  288 LLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQK---SGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            +L+ +E   L   +Q +  L ++++ L +  G +P  ++ A    +    ++K++  G   + K+IK N+RLV+ V   Y     +G   QDL Q G RGL+   ++++  + F+ STY  +WI+ A+ ++++  S   R+PF L     ++ +A+ +L+ E GR P + E+ E   ++ +    V  A K   SL  K  + Q    + +    +   A       L++  L+ VLD L P+E  VIR R+G+D    + L EI   + +SRE VR+ E+    KLK++ R  +L QY+
Sbjct:  219 VLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMT-TSNFTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDV-DGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYI 516
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT5G24120.1 (| sigma factor E | Chr5:8157794-8159746 REVERSE LENGTH=517 | 201606)

HSP 1 Score: 134.806 bits (338), Expect = 1.605e-33
Identity = 87/300 (29.00%), Postives = 155/300 (51.67%), Query Frame = 0 
Query:  288 LLTVSEEINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQK---SGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQPDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPEAETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIGEMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYM 584
            +L+ +E   L   +Q +  L ++++ L +  G +P  ++ A    +    ++K++  G   + K+IK N+RLV+ V   Y     +G   QDL Q G RGL+   ++++  + F+ STY  +WI+ A+ ++++  S   R+PF L     ++ +A+ +L+ E GR P + E+ E   ++ +    V  A K   SL  K  + Q    + +    +   A       L++  L+ VLD L P+E  VIR R+G+D    + L EI   + +SRE VR+ E+    KLK++ R  +L QY+
Sbjct:  219 VLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMT-TSNFTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDV-DGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYI 516
[Close]
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Match: AT3G53920.2 (| RNApolymerase sigma-subunit C | Chr3:19961825-19963820 REVERSE LENGTH=414 | 201606)

HSP 1 Score: 115.546 bits (288), Expect = 1.639e-27
Identity = 46/133 (34.59%), Postives = 92/133 (69.17%), Query Frame = 0 
Query:  294 EINLSAGIQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKEKMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKFSTYAHWWIKQAVGKALSDQSRIIRLP 426
            E  +S G++ +  +E+++ +L E+ G   + S WA  AG+++K L + L+YG  C+++++KS   LV+ +A+NY+  G++ +DL+Q G  G+++GAE++D ++G+KFSTY  +WI++++   +S  +R + +P
Sbjct:  278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIP 410
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2Y7P9|A0A1S2Y7P9_CICAR0.000e+070.35RNA polymerase sigma factor OS=Cicer arietinum OX=... [more]
tr|A0A445KTM8|A0A445KTM8_GLYSO0.000e+062.09RNA polymerase sigma factor OS=Glycine soja OX=384... [more]
tr|K7KHD7|K7KHD7_SOYBN0.000e+062.09RNA polymerase sigma factor OS=Glycine max OX=3847... [more]
tr|A0A4P1QY15|A0A4P1QY15_LUPAN0.000e+065.16RNA_pol_sigma70 domain-containing protein OS=Lupin... [more]
tr|G7J988|G7J988_MEDTR0.000e+079.02RNA polymerase sigma factor OS=Medicago truncatula... [more]
tr|A0A445K2Q3|A0A445K2Q3_GLYSO0.000e+060.57RNA polymerase sigma factor OS=Glycine soja OX=384... [more]
tr|A0A6A4PQC9|A0A6A4PQC9_LUPAL0.000e+072.16RNA polymerase sigma factor OS=Lupinus albus OX=38... [more]
tr|A0A2Z6NPY7|A0A2Z6NPY7_TRISU0.000e+077.36RNA_pol_sigma70 domain-containing protein OS=Trifo... [more]
tr|A0A6P4B029|A0A6P4B029_ZIZJJ0.000e+057.40RNA polymerase sigma factor OS=Ziziphus jujuba OX=... [more]
tr|A0A0S3RA77|A0A0S3RA77_PHAAN0.000e+060.03RNA polymerase sigma factor OS=Vigna angularis var... [more]
back to top
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|O22056|SIGB_ARATH0.000e+052.75RNA polymerase sigma factor sigB OS=Arabidopsis th... [more]
sp|P26683|SIGA_NOSS11.095e-8542.27RNA polymerase sigma factor SigA OS=Nostoc sp. (st... [more]
sp|P38023|SIGA1_SYNE73.247e-7743.29RNA polymerase sigma factor SigA1 OS=Synechococcus... [more]
sp|P52322|SIGA_MICAE4.140e-7438.87RNA polymerase sigma factor SigA OS=Microcystis ae... [more]
sp|Q9LD95|SIGF_ARATH6.590e-7336.49RNA polymerase sigma factor sigF, chloroplastic OS... [more]
sp|P74565|SIGA_SYNY34.700e-6937.54RNA polymerase sigma factor SigA OS=Synechocystis ... [more]
sp|Q31QG5|SIGA3_SYNE77.452e-6337.95RNA polymerase sigma factor SigA3 OS=Synechococcus... [more]
sp|P9WGI5|SIGB_MYCTU2.720e-6241.84RNA polymerase sigma factor SigB OS=Mycobacterium ... [more]
sp|P9WGI4|SIGB_MYCTO2.720e-6241.84RNA polymerase sigma factor SigB OS=Mycobacterium ... [more]
sp|Q31ME3|SIGA2_SYNE75.093e-6236.96RNA polymerase sigma factor SigA2 OS=Synechococcus... [more]
back to top
BLAST of Vfaba.Hedin2.R1.4g232840.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 10
Match NameE-valueIdentityDescription
AT1G08540.10.000e+052.75| RNApolymerase sigma subunit 2 | Chr1:2703461-270... [more]
AT2G36990.16.742e-7436.49| RNApolymerase sigma-subunit F | Chr2:15537502-15... [more]
AT3G53920.11.288e-5834.47| RNApolymerase sigma-subunit C | Chr3:19961041-19... [more]
AT5G13730.13.482e-4834.23| sigma factor 4 | Chr5:4429132-4430744 REVERSE LE... [more]
AT1G64860.11.525e-4232.76| sigma factor A | Chr1:24098497-24100746 FORWARD ... [more]
AT1G64860.24.959e-3432.04| sigma factor A | Chr1:24098497-24100739 FORWARD ... [more]
AT5G24120.31.605e-3329.00| sigma factor E | Chr5:8157794-8159746 REVERSE LE... [more]
AT5G24120.21.605e-3329.00| sigma factor E | Chr5:8157794-8159746 REVERSE LE... [more]
AT5G24120.11.605e-3329.00| sigma factor E | Chr5:8157794-8159746 REVERSE LE... [more]
AT3G53920.21.639e-2734.59| RNApolymerase sigma-subunit C | Chr3:19961825-19... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 400..408
score: 82.44
coord: 560..571
score: 50.05
coord: 524..536
score: 48.64
coord: 376..389
score: 51.66
coord: 545..560
score: 49.48
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 425..499
e-value: 1.1E-8
score: 37.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 506..587
e-value: 8.3E-25
score: 88.3
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 520..572
e-value: 1.2E-15
score: 56.8
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 433..507
e-value: 2.7E-14
score: 53.0
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 167..424
e-value: 3.9E-39
score: 137.1
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 119..584
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 514..572
e-value: 8.13524E-11
score: 55.5734
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 350..573
e-value: 1.5E-30
score: 104.0
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 352..421
e-value: 1.2E-17
score: 63.4
IPR016262RNA polymerase sigma factor, SigB/C/D/F, plastidPIRSFPIRSF000767Sigma_factor_SigCcoord: 10..587
e-value: 7.3E-168
score: 553.1
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 420..471
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 484..584
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 273..421

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.4g232840.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g232840.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g232840.1; organism=Vicia faba; type=mRNA; length=1776bp
ATGTCTTGTTTCTTGCCACACTTTAACACTTTCACAACTCCTATTCCTAT
CCCTACAAACCGCCATCATCATATCATTCTTCAAATTAAATTAAGACGCC
CACACTGTATTCTGTCTCCTTCCGCACCATCAACCGCACTCCTTGAATTC
GATGCTGCAAACACTCCTTGGTCCTATGTCACTTCTCAGGAAAACTTTAA
AGCAGCCTCATCTGCAGAATCACTGCTTACTAGTCAAGACACGGTAATAG
CGGAAAGCTTTAAAGCAGCCTCATCTGCAGAATCACTGCTTACTAGTGAA
GACGCGGTAATAGCGGAAAACTTTAAAGCAGCCTCATCTGCAGAATCACT
GCTTACTAGTGAAGACGCGGCAATAGCCTATGCTGCTTCTGAAGCCCTTG
CTCTTGCTAAAGCTGCTGCAAAACTTGCAAAGGATGCAACTCTATTAGTA
AAAGACAACCCTCCACAACAGCCGGTGTTTAGGCCACAACTTCCTTCCGC
GCCTGAAAATTTACTTCTCAAATGGGTTCAACATATGGAAGCACAAGATG
CTGTAGCAGAAGGATCCGTTGCTACTGGACTGGAAATAATGGAACATGTT
GACAATACTTCAACCCAAGAGGAGGAGCCTACCTTTGAGGAACTTGAAGA
CATCGACAAAGAATTGTTGGATAGTATAGATGCAAGATCTGGACGCCAAA
CGGAAAGAAAAGCTAGAAGACTCAGAGCATCTGGGAAGGCTGCCACTAAT
ATTGTGTCCTTTAGGTCTGGATCCACCAGTAGAAAAAAGCGTGTTCGGAC
ACAACAGGTTGACTATTCTGATCCACTTCGTTACTTGAGAACTGCAACCA
GATCTTCAAAGCTTCTTACTGTATCTGAAGAAATTAACTTGTCTGCAGGA
ATACAGGATCTGATAAAGCTCGAAAAACTTCAAGAGGAGCTTACAGAAAA
ATGTGGTAGCCAGCCCACATTTTCTCAATGGGCTACAATGGCAGGGGTAG
ATCAGAAGACCCTAAGAAAGAGATTAAATTATGGTGAGCGTTGCAAAGAA
AAAATGATTAAAAGCAATATACGACTTGTCATATCAGTTGCTAAGAATTA
CCAGAAATCAGGGATGAGTCTGCAAGATCTAGTCCAGGAAGGATGCCGCG
GCCTTGTAAAAGGCGCAGAGAAGTATGATGCTTCTAAGGGCTTTAAGTTC
TCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTGGGAAAGCCCTTTC
TGATCAGTCAAGAATTATTCGCTTGCCATTCAACTTGGTGAGAGCAACTT
ACAAAGTAAGGGAGGCAAGAAAACAACTGTACAGTGAAAATGGAAGACAA
CCAGACGATAAAGAAATTGCTGAAGCAACTGGGCTGTCAATGAAGACGCT
TACTGCTGTTTATTTGGCCCCAAAATCTCCCAGATCTCTAGAGCGGAAAA
TAGGGATCAACCAGAGTCTTAAACCTTCAGAAGTACTTTCTGCACCGGAA
GCTGAAACAGCTGAAGAACAGCTGATTAAGCAGTTAATGAAAAAGGACCT
AGAAAAGGTACTAGACTGCCTGAATCCGAGAGAGAAACAGGTGATTAGAT
GGAGATTTGGTATGGACGATGGAAGGATGAAGGCACTGCAAGAGATTGGG
GAAATGATAGGCGTGAGTAGGGAGAGAGTTAGACAAATTGAGTTATGTGG
TTTTAGTAAGCTTAAGAACAGGAAGAGAGCCAAACATTTGGAGCAGTATA
TGAATTTAGGTTATTTCAGGTCCTGA
back to top

protein sequence of Vfaba.Hedin2.R1.4g232840.1_vfh_v1

>Vfaba.Hedin2.R1.4g232840.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g232840.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g232840.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=591bp
MSCFLPHFNTFTTPIPIPTNRHHHIILQIKLRRPHCILSPSAPSTALLEF
DAANTPWSYVTSQENFKAASSAESLLTSQDTVIAESFKAASSAESLLTSE
DAVIAENFKAASSAESLLTSEDAAIAYAASEALALAKAAAKLAKDATLLV
KDNPPQQPVFRPQLPSAPENLLLKWVQHMEAQDAVAEGSVATGLEIMEHV
DNTSTQEEEPTFEELEDIDKELLDSIDARSGRQTERKARRLRASGKAATN
IVSFRSGSTSRKKRVRTQQVDYSDPLRYLRTATRSSKLLTVSEEINLSAG
IQDLIKLEKLQEELTEKCGSQPTFSQWATMAGVDQKTLRKRLNYGERCKE
KMIKSNIRLVISVAKNYQKSGMSLQDLVQEGCRGLVKGAEKYDASKGFKF
STYAHWWIKQAVGKALSDQSRIIRLPFNLVRATYKVREARKQLYSENGRQ
PDDKEIAEATGLSMKTLTAVYLAPKSPRSLERKIGINQSLKPSEVLSAPE
AETAEEQLIKQLMKKDLEKVLDCLNPREKQVIRWRFGMDDGRMKALQEIG
EMIGVSRERVRQIELCGFSKLKNRKRAKHLEQYMNLGYFRS
back to top

mRNA from alignment at chr4:1584149765..1584154006+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.4g232840.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g232840.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g232840.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1584149765..1584154006+ (Vicia faba
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR036388WH-like_DNA-bd_sf
IPR007630RNA_pol_sigma70_r4
IPR007624RNA_pol_sigma70_r3
IPR014284RNA_pol_sigma-70_dom
IPR007627RNA_pol_sigma70_r2
IPR016262RNA_pol_sigma_SigB/C/D/F
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription initiation
GO:0006355regulation of DNA-templated transcription
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity