Vfaba.Hedin2.R1.4g242600.1

Transcript Overview
NameVfaba.Hedin2.R1.4g242600.1
Unique NameVfaba.Hedin2.R1.4g242600.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length858
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:1642471744..1642472601 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR369Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR397Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL071Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL233Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL052Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL631Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0087Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0482Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL080Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL397Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvfhL889Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL576Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL299Pisum sativum Cameor genome v1aPisum sativum
vfhvfhL030Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL038Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL312Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR478Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR514Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL083Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL259Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0247Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0435Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivfhL827Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0579Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0848Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR465Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR522Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR455Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR446Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR464Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR526Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL051Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL564Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL164Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL295Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL043Cicer arietinum
carvfhL564Cicer arietinum
ccavfhL172Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL695Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR527Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR611Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR470Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR524Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL065Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL536Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR517Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR590Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL378Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL548Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR445Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR476Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_004486137.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014652049.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014662285.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va01G100580.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun06g157300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cr_02537.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-KK1_017265Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_03396Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cc_v2.0_28112.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-TanjilR_27198Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun06g157300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigan.05G088400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_19473.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_00672Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_09363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg39081.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun03g443500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
PvulFLAVERTChr03.1000501Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigst.05G070300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Va09G054930.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vum_05G00722.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.003G081900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_22193.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_22005.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
LR48_mrnaVigan09g194700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr03.1076Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan01g322500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_004574Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.01G383400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_02253.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Phvul.006G145400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg20869.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat04G0014100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
PvulFLAVERTChr06.1826Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigan.01G544600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat01G0484300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vum_01G04144.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun03g443500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058867757.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.1g368120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Tiffany.R1.4g186520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.1g448800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g242600Vfaba.Hedin2.R1.4g242600_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g242600.1_vfh_v1-exonVfaba.Hedin2.R1.4g242600.1_vfh_v1-exon-chr4_vfh_v1:1642471744..1642472601Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g242600.1_vfh_v1-cdsVfaba.Hedin2.R1.4g242600.1_vfh_v1-cds-chr4_vfh_v1:1642471744..1642472601Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g242600.1_vfh_v1Vfaba.Hedin2.R1.4g242600.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.4g242600.1_vfh_v1Vfaba.Hedin2.R1.4g242600.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LHT1|A0A2Z6LHT1_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_203150 PE=4 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.765e-90
Identity = 178/301 (59.14%), Postives = 206/301 (68.44%), Query Frame = 0
Query:    1 MDTKSSKTQSPFLSSTSNRSPKRKSNNACSSPEFEFWMRRNPSLPQPNLLSADQLFLDGVILPLHLISNK----PEQKPDSDQVHNSSPAMTDYSTINTISKRWKNIFGKKNNSN-TEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRSKSAKNSVTRPKS---VPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVW---RRGGSGKNTETLYMKNDKTKRETTVSHRRRLTTAAGGGGG-----NVPVCVGYSRKLRCRMEESSGG-KLLNLRNFFTKKTVLV 284
            MDTK+S+T SP LSS+  RS +RK NN C+SPEFEFWM RNPS PQPN+L ADQLF DGVILPLHLIS K    P QKPDS     +S   T  +T ++ SKRWK+IF KKNN+N  EEKVKKK   +K++G  G GG   S+EL IN+WPF RS SA NS T+PKS    P TRKVNSAPCSRSNSAGDSKSRK+PSS GR GVH+GRSSPVW   RRGG                  T+ + R RL +  GGG G     NVP+ + YS    CR+EE+SGG KL NLR FFTKKTVL+
Sbjct:    1 MDTKTSQTHSPLLSSS--RSTRRKGNNECTSPEFEFWMLRNPSFPQPNILPADQLFHDGVILPLHLISTKYKPEPHQKPDSSSAAITS-DSTTTTTTSSNSKRWKDIFRKKNNNNAAEEKVKKK---DKRVGNNGGGGGVSSAELNINLWPFFRSSSAGNSTTKPKSFTGAPFTRKVNSAPCSRSNSAGDSKSRKWPSSPGRAGVHLGRSSPVWQVPRRGGCS---------------ATSWNRRSRLASTGGGGKGKVLNLNVPMSIEYSNDSGCRIEENSGGSKLFNLRTFFTKKTVLM 280          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|G7JKF1|G7JKF1_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_4g132690 PE=4 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.286e-87
Identity = 172/307 (56.03%), Postives = 202/307 (65.80%), Query Frame = 0
Query:    1 MDTKSSKTQSPFLSSTSNRSPKRKSNNACSSPEFEFWMRRNPSLPQPNLLSADQLFLDGVILPLHLISNKPEQKPDSDQVHNSSPAMTD--YSTINTISKRWKNIFGKKNNSNTEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRSKSAKNSVTRPKS---VPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVWRRGGSGKNTETLYMKNDKTKRETTVSHRRRLTTA---------AGGGGGNVPVCVGYSRKLRCRMEESSGG----------KLLNLRNFFTKKTVL 283
            MDTKS++  SP LSSTS    +RK NN CSSPEFEFWM RNPS PQPN++ ADQLFL+GVILPLHL+S + +  P  +   NSSP +TD    T  T SKRWKNIF KKNN+  E+  KK+K+          G    S+EL INIWPFSRS+S+ NSV+RPKS    PVTRKVNSAPCSRSNSAGDSKSRK PSS  RVGVH+GRSSPVW+   + KNT    +  DK+KRETT S R R T+          A     +VP+CVGYS  +  R+EE+S            KL NLR FFTKKT L
Sbjct:    1 MDTKSTQRHSPLLSSTS----RRKCNNECSSPEFEFWMLRNPSFPQPNIIPADQLFLNGVILPLHLLSTQNKHDPVPEP--NSSPPITDGLTITTTTTSKRWKNIFMKKNNNTEEKVKKKEKR-----VGNSGGAGGGSAELNINIWPFSRSRSSGNSVSRPKSSTGAPVTRKVNSAPCSRSNSAGDSKSRKLPSSPARVGVHLGRSSPVWQVRHAAKNT----VNPDKSKRETTTSRRSRFTSTTGGGGGSGKAKVLNLSVPMCVGYSHNISYRIEENSNSVSNGGGGGGGKLFNLRTFFTKKTFL 292          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4P1RN06|A0A4P1RN06_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_09363 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.464e-75
Identity = 159/325 (48.92%), Postives = 197/325 (60.62%), Query Frame = 0
Query:    1 MDTKSSKTQSPFLSSTSNRSPKRKSNNACSSPEFEFWMRRNPSLPQPNLLSADQLFLDGVILPLHLIS--NKPEQKPDSDQ--VHNSSPAMTDYSTINTIS-----KRWKNIFGK--KNNSNTEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRSKSAKNSVTRPK---SVPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVW--RRGG-SGKNTETLYMKNDKTK--RETTVSHRRRLTTAAGGGGG-----NVPVCVGYSRKLRCRMEES-----------------SGGKLLNLRNFFTKKTVLV 284
            MDT ++  Q P         P R+SN  C+SPEFEFW  RNPS PQPNLLSAD+LF+DGV+LPLHL+S  NKP+ +P + Q  V +S P     S+ ++ +     KRWK+IF K  KNNS TEEK K+  K +KK  + G G     +EL INIWPFSRS+SA NSVTRPK     PVTRKVNSAPCSRSNS G+SK RK PSS GR GVH+GRSSPVW  RRG  + K +E   +  +K    R+T  S   R +  +G G       NVP C+GY   L CR  E+                 +GG L NLR+ FTKK+++ 
Sbjct:    1 MDTTNTLNQEPL--------PNRRSN-YCNSPEFEFWKFRNPSFPQPNLLSADELFVDGVLLPLHLLSVTNKPDPQPRTSQKPVQHSEPGSGPDSSSSSSATSSESKRWKDIFRKTEKNNS-TEEKEKENDKGKKKERRSGSGASV--AELNINIWPFSRSRSAGNSVTRPKLFTGAPVTRKVNSAPCSRSNSTGESKYRKLPSSPGRAGVHVGRSSPVWQVRRGATAAKKSEPEALNGEKGSKIRDTATS---RWSKVSGSGKARVLNLNVPTCIGYRHNLSCRSNENGGVGASGATTTNGGDDRNGGNLFNLRSLFTKKSIVT 310          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KBX3|A0A2K3KBX3_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g053692 PE=4 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.211e-74
Identity = 164/275 (59.64%), Postives = 187/275 (68.00%), Query Frame = 0
Query:   38 MRRNPSLPQPNLLSADQLFLDGVILPLHLIS--NKPE--QKPDSDQVHNSSPAMTDYSTINTIS-----KRWKNIFGKKNNSNTEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRSKSAKNSVTRPKS---VPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVW--RRGG--SGKNTE-TLYMK-NDKTKRETTVSHRRRLTTAAGGGGG---------NVPVC-VGYSRKLRCRMEESSGGKLLNLRNFFTKKTVLV 284
            M RNPS PQPN+L ADQLF DGVILPLHLIS  NKP+  QKPDS     SSPA+T  ST  T +     KRWK+IF KK+N NTEEKVKKK K     G G     S S+EL IN+WPFSRS+SA NS T+PKS    PV+RKVNSAPCSRSNSAGDSKSRK+PSS GR GVH+GRSSPVW  RRGG  + KNT  ++ +K  DK+KRETT S RR    + G GGG         NVP+C +GY+     +     GGKL NLR FFTKKTVL 
Sbjct:    1 MLRNPSFPQPNILPADQLFHDGVILPLHLISTKNKPDRHQKPDS-----SSPAITSDSTTTTTTTSSSSKRWKDIFRKKHN-NTEEKVKKKDK-RVGNGGGVGVSVSSSAELNINLWPFSRSRSAGNSTTKPKSFTGAPVSRKVNSAPCSRSNSAGDSKSRKWPSSPGRAGVHLGRSSPVWQVRRGGCSATKNTSLSVSIKPADKSKRETTTSTRRSRLASTGAGGGSAKDKVLNLNVPMCIIGYNDSSE-KENSVGGGKLFNLRTFFTKKTVLT 267          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XAB9|A0A1S2XAB9_CICAR (vitellogenin-2 OS=Cicer arietinum OX=3827 GN=LOC101513522 PE=4 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 8.369e-73
Identity = 153/318 (48.11%), Postives = 187/318 (58.81%), Query Frame = 0
Query:   29 CSSPEFEFWMRRNPSLPQPNLLSADQLFLDGVILPLHLIS-----NKPEQ---------KPDSDQVHNSSPAMTDYSTINTIS----KRWKNIFGKKNNSNTEEKVKKKKKNEKKLGKGGC---GGDSFSSELYINIWPFSRSKSAKNSVTRPKSVP---VTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVW--RRGGSGKNTETLYMKNDK--TKRETTVSHRRRLTTAAGGGGG----NVPVCVGYSRKLRCR------------------------------MEESSGGKLLNLRNFFTKKTVLV 284
            C+SPEFEFWM RNPS PQPNLL+AD+LF+DGV+LPLHL+S     + P+Q          PD D    SSPA+TD S+ ++ +    KRWK+IF K    NTE   ++K K ++K  K      G  S S+EL INIWPFSRS+SA N+ TRPK  P   V RKVNSAPCSRSNS GDSKS+K+PSS GR GVH+GRSSPVW  RRGGS KN+E     N +   KRET  S R ++    G        NVP+C+GY   L CR                               +E SGG L NLRN FTKK+++ 
Sbjct:   17 CNSPEFEFWMLRNPSFPQPNLLTADELFVDGVLLPLHLLSTTNKSDPPQQTPKIDPFIHDPDPDPQPESSPAITDSSSSSSSTFSSSKRWKDIFRKGEKKNTENNTEEKDKEKEKKNKKKERKNGSGSSSAELNINIWPFSRSRSAGNTGTRPKLFPGASVPRKVNSAPCSRSNSTGDSKSKKWPSSPGRAGVHVGRSSPVWQVRRGGS-KNSEQHQTTNIEKALKRETAASRRSKVVPGGGAKARVLNLNVPMCIGYRHHLSCRSDENGAVGVSSVAATNGGADVRGNNGGECHHDEGSGGNLFNLRNLFTKKSIVT 333          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|Q2HTG5|Q2HTG5_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11440365 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 8.594e-71
Identity = 156/333 (46.85%), Postives = 198/333 (59.46%), Query Frame = 0
Query:   25 SNNACSSPEFEFWMRRNPSLPQPNLLSADQLFLDGVILPLHLI------------------SNKP--EQKPDSDQVH-NSSPAMTDYSTINTIS---KRWKNIF--GKKNNSNTEEKVKKKKKNEKKLGKG-----GCGGDSFSSELYINIWPFSRSKSAKNSVTRPK---SVPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVW--RRGGSGKNTETLYMKNDKT----KRETTVSHRRRLTTAAGGGGG----NVPVCVGYSRKLRCR-----------------------------MEESSGGKLLNLRNFFTKKTVLV 284
            +N+ C+SPEFEFWM RNPS PQPNL +ADQLF++GVILPLHL+                  S+ P  E  P+ D  H  SSP +T+ S+  +     KRWK+IF  G+KNN+  +EK K+K+K +K   K      G G +S ++EL INIWPFSRS+SA N+ TRPK     PVTRKVNSAPCSRSNSAG+SKSRK+PSS GR GVH+GR+SPVW  RRGG GKN++    +   T    K+E TVS R ++ +  GG       NVP+C+GY   L CR                              +E SGG L NLRN FTKK+++ 
Sbjct:   15 TNSNCNSPEFEFWMLRNPSFPQPNLHTADQLFVNGVILPLHLLPTTSKTDPPPQTPTSNPSSHNPVSEPDPEPDSSHPESSPVITESSSSASTFSGSKRWKDIFRKGEKNNTEDKEKEKEKEKEKKNKDKKKERKNGNGANS-AAELNINIWPFSRSRSAGNTTTRPKFFTGAPVTRKVNSAPCSRSNSAGESKSRKWPSSPGRAGVHVGRNSPVWQVRRGG-GKNSDQQTQQGSNTDKELKKEATVSRRSKVVSGGGGKAKVLSLNVPMCIGYRHHLSCRSDENSAIGVSGGVAVNRGGGDGGGGECHHHDEGSGGNLFNLRNLFTKKSIVT 345          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445AXV5|A0A445AXV5_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B01g056072 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 8.785e-71
Identity = 161/354 (45.48%), Postives = 209/354 (59.04%), Query Frame = 0
Query:    1 MDTKSSKTQSPFLSSTSNRSPKRKSNNACSSPEFEFWMRRNPSLPQPNLLSADQLFLDGVILPLHLISNKPEQKPDSDQ---------------------VHNSSPAMTDYSTINTISKRWKNIFGK-------KNNSNTEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRSKSAKNSVTRPK---SVPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVW--RRGGS-GKNTETLYMKNDK-TKRETTVSHRRRLTTAAGGGGG-------NVPVCVGYSRKLRCRME----------------------------ESSGGKLLNLRNFFTKKTVLV 284
            MDTKS + ++   ++TS+  P +       SPEFEFWM RNPS PQP++LSAD+LF+DGV+LPLHL+S+K  Q  ++D                      + +SSPA    S+    SKRW++IF K       +NN++ +E   +K K +KK  KGG    S ++EL INIWPFSRS+SA N+VTRPK     PVTRK NSAPCSRSNSAG+SKSRK+PSS GR GVH+GRSSPVW  RRGGS  KNTE L++ ++K +KRET+   RR   +++GG GG       NVP C+GY   L CR +                             + G KL NLR+ F KKT+L 
Sbjct:    1 MDTKSPQPRT--RTTTSDDCPPK-------SPEFEFWMVRNPSCPQPDILSADELFVDGVLLPLHLVSSK-TQILNTDTQQTSTSSSQPDPPPPPEPSASITDSSPAAATLSS----SKRWRDIFRKSSEKKNSENNNSAQENDNEKDKAKKKDRKGGASTAS-AAELNINIWPFSRSRSAGNAVTRPKLFPGAPVTRKTNSAPCSRSNSAGESKSRKWPSSPGRGGVHLGRSSPVWQVRRGGSTSKNTEPLFLNHEKWSKRETSTVGRRSKVSSSGGEGGKARVLNINVPTCIGYRTHLSCRSDVMNSAVGSNSTVRPSNGNGNGNSNGADGGNVGSKLFNLRSLF-KKTLLT 338          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KNU4|A0A4D6KNU4_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g82 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.935e-70
Identity = 144/310 (46.45%), Postives = 181/310 (58.39%), Query Frame = 0
Query:   23 RKSNNACSSPEFEFWMRRNPSLPQPNLLSADQLFLDGVILPLHLISNKPE---------QKPDSDQVHNSSPAMTDYSTINTISKRWKNIFGKKNNSNTEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRSKSAKNSVTRPK-SVPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVWR-RGGSGKNTETLYMKNDKTKRETTVSHRRRLTTAAGGGGG---------NVPVCVGYSRKLRCRMEESS----------------------------GGKLLNLRNFFTKKTVLV 284
            R  N+ C+SPEFEFWM RNPS PQPN+LSADQLF++GV+LPLHL+ NKP           +P+ +     SPA+TD ++  T SKRWK+IF KKN  ++ +  KK+KKN          G + S+EL INIWPFSRS+SA N+ TRPK   P  RK NSAPCSRSNSAG+SKSRK+PSS GR GVH+GRSSPVW+ R G       L+ +N    R + +S         GGG           NVP+C+ Y   L CR +E+S                            GGKL NLR+ FTKK+V+ 
Sbjct:    6 RSRNSPCASPEFEFWMVRNPSFPQPNILSADQLFVNGVLLPLHLL-NKPHPSQTPPDPEPEPEPEPEPEPSPAITDSTSAATPSKRWKDIFKKKNAESSNDARKKEKKN----------GVASSAELNINIWPFSRSRSAGNAGTRPKLFAPAARKANSAPCSRSNSAGESKSRKWPSSPGRAGVHLGRSSPVWQVRRGKNPEPPPLHHENKPKSRRSKLS---------GGGWNNPKTKVLNLNVPMCISYRHHLTCRSDENSAIGVRGASDNIPGSDSNSGNSNPAHANVGGKLFNLRSLFTKKSVVA 295          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4C2E1|A0A6P4C2E1_ARADU (uncharacterized protein LOC107466410 OS=Arachis duranensis OX=130453 GN=LOC107466410 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 3.895e-70
Identity = 160/352 (45.45%), Postives = 209/352 (59.38%), Query Frame = 0
Query:    1 MDTKSSKTQSPFLSSTSNRSPKRKSNNACSSPEFEFWMRRNPSLPQPNLLSADQLFLDGVILPLHLISNKPEQKPDSDQ---------------------VHNSSPAMTDYSTINTISKRWKNIFGK-------KNNSNTEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRSKSAKNSVTRPK---SVPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVW--RRGGS-GKNTETLYMKNDK-TKRETTVSHRRRLTTAAGGGGG-------NVPVCVGYSRKLRCRMEESS--------------------------GGKLLNLRNFFTKKTVLV 284
            MDTKS + ++   ++TS+  P +       SPEFEFWM RNPS PQP++LSAD+LF+DGV+LPLHL+S+K  Q  ++D                      + +SSPA    S+    SKRW++IF K       +NN++ +E   +K K +KK  KGG    S ++EL INIWPFSRS+SA N+VTRPK     PVTRK NSAPCSRSNSAG+SKSRK+P+S GR GVH+GRSSPVW  RRGGS  KNTE L++ ++K +KRET+   RR   +++GG GG       NVP C+GY   L CR +  +                          G KL NLR+ F KKT+L 
Sbjct:    1 MDTKSLQPRT--RTTTSDDCPPK-------SPEFEFWMVRNPSCPQPDILSADELFVDGVLLPLHLVSSK-TQIHNTDTQQTSTSSSQPDPPPPPEPSASITDSSPAAATLSS----SKRWRDIFRKSSEKKNSENNNSAQENDNEKDKAKKKDRKGGASTAS-AAELNINIWPFSRSRSAGNAVTRPKLFPGAPVTRKTNSAPCSRSNSAGESKSRKWPNSPGRGGVHLGRSSPVWQVRRGGSTSKNTEPLFLNHEKWSKRETSTVGRRSKVSSSGGEGGKARVLNINVPTCIGYRTHLSCRSDVMNSAVGSNSTVRPSNGNGNSNGADGGNVGSKLFNLRSLF-KKTLLT 336          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445EL94|A0A445EL94_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000751 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 3.895e-70
Identity = 160/352 (45.45%), Postives = 209/352 (59.38%), Query Frame = 0
Query:    1 MDTKSSKTQSPFLSSTSNRSPKRKSNNACSSPEFEFWMRRNPSLPQPNLLSADQLFLDGVILPLHLISNKPEQKPDSDQ---------------------VHNSSPAMTDYSTINTISKRWKNIFGK-------KNNSNTEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRSKSAKNSVTRPK---SVPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVW--RRGGS-GKNTETLYMKNDK-TKRETTVSHRRRLTTAAGGGGG-------NVPVCVGYSRKLRCRMEESS--------------------------GGKLLNLRNFFTKKTVLV 284
            MDTKS + ++   ++TS+  P +       SPEFEFWM RNPS PQP++LSAD+LF+DGV+LPLHL+S+K  Q  ++D                      + +SSPA    S+    SKRW++IF K       +NN++ +E   +K K +KK  KGG    S ++EL INIWPFSRS+SA N+VTRPK     PVTRK NSAPCSRSNSAG+SKSRK+P+S GR GVH+GRSSPVW  RRGGS  KNTE L++ ++K +KRET+   RR   +++GG GG       NVP C+GY   L CR +  +                          G KL NLR+ F KKT+L 
Sbjct:    1 MDTKSLQPRT--RTTTSDDCPPK-------SPEFEFWMVRNPSCPQPDILSADELFVDGVLLPLHLVSSK-TQIHNTDTQQTSTSSSQPDPPPPPEPSASITDSSPAAATLSS----SKRWRDIFRKSSEKKNSENNNSAQENDNEKDKAKKKDRKGGASTAS-AAELNINIWPFSRSRSAGNAVTRPKLFPGAPVTRKTNSAPCSRSNSAGESKSRKWPNSPGRGGVHLGRSSPVWQVRRGGSTSKNTEPLFLNHEKWSKRETSTVGRRSKVSSSGGEGGKARVLNINVPTCIGYRTHLSCRSDVMNSAVGSNSTVRPSNGNGNSNGADGGNVGSKLFNLRSLF-KKTLLT 336          
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. Araport11
Match: AT4G22190.1 (| serine/arginine repetitive matrix-like protein | Chr4:11742102-11743265 REVERSE LENGTH=387 | 201606)

HSP 1 Score: 173.711 bits (439), Expect = 2.157e-51
Identity = 130/302 (43.05%), Postives = 173/302 (57.28%), Query Frame = 0
Query:    1 MDTKSSKTQSPFLSSTSN-RSPKRKSNNACSSPEFEFWMRRNPSLPQPN--LLSADQLFLDGVILPLHLISNKPEQKPD------------------SDQVHNSSPAM-TDYSTINTISKRWKNIFGKKNN--SNTEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRSKSAKNSVTRPK---SVPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIGRSSPVW--RRGGSGKNTETLYMKNDKTKRETTVSHRRRLTTAAGGGGG-----NVPVCVGYSRKLRCRMEESSGG 268
            MD+ +S    P   + S   S +R+S+   + PEFEFW   N S PQ +  LLSAD+LF DGV+LPL L+S K E + D                  ++Q  +  P + ++ +   T+SKRW++IF K        +EKVK+ KK +KK G G   G    +EL INIWPFSRS+SA N+VTRP+     P TRKV+SAPCSRSNS G+SKSRK+PSS  R GVH+GR+SPVW  RRGG     +T+     +   +  +   R+  T            NVP+C+GY  +L CR EESSGG
Sbjct:   49 MDSPTSIRSKPLPETLSPCGSQRRRSSCDSNPPEFEFWRLTNSSFPQADSDLLSADELFHDGVLLPLDLLSVKSELQSDPNIAECDPDPSPSTGSLITEQKSDLEPGLGSELTRETTVSKRWRDIFRKSETKPPGKKEKVKENKKEKKKTGSGPSSGSGSGAELNINIWPFSRSRSAGNNVTRPRMSFGAPTTRKVSSAPCSRSNSTGESKSRKWPSSPSRNGVHLGRNSPVWQVRRGGGAPVGKTIPEPMGRVVGKREIPETRKGKTVIESNKAKVLNLNVPMCIGYRSRLSCRTEESSGG 350          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2Z6LHT1|A0A2Z6LHT1_TRISU1.765e-9059.14Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|G7JKF1|G7JKF1_MEDTR3.286e-8756.03Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A4P1RN06|A0A4P1RN06_LUPAN1.464e-7548.92Uncharacterized protein OS=Lupinus angustifolius O... [more]
tr|A0A2K3KBX3|A0A2K3KBX3_TRIPR4.211e-7459.64Uncharacterized protein OS=Trifolium pratense OX=5... [more]
tr|A0A1S2XAB9|A0A1S2XAB9_CICAR8.369e-7348.11vitellogenin-2 OS=Cicer arietinum OX=3827 GN=LOC10... [more]
tr|Q2HTG5|Q2HTG5_MEDTR8.594e-7146.85Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A445AXV5|A0A445AXV5_ARAHY8.785e-7145.48Uncharacterized protein OS=Arachis hypogaea OX=381... [more]
tr|A0A4D6KNU4|A0A4D6KNU4_VIGUN1.935e-7046.45Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A6P4C2E1|A0A6P4C2E1_ARADU3.895e-7045.45uncharacterized protein LOC107466410 OS=Arachis du... [more]
tr|A0A445EL94|A0A445EL94_ARAHY3.895e-7045.45Uncharacterized protein OS=Arachis hypogaea OX=381... [more]
back to top
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Vfaba.Hedin2.R1.4g242600.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G22190.12.157e-5143.05| serine/arginine repetitive matrix-like protein |... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..186
NoneNo IPR availablePANTHERPTHR35132SERINE/ARGININE REPETITIVE MATRIX-LIKE PROTEINcoord: 5..281

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.4g242600.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g242600.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g242600.1; organism=Vicia faba; type=mRNA; length=858bp
ATGGACACTAAAAGCTCAAAAACACAGTCACCATTTTTATCATCAACTTC
AAATAGAAGCCCAAAAAGAAAAAGCAACAATGCATGCAGTTCACCAGAAT
TTGAATTCTGGATGCGAAGAAATCCCTCTTTACCACAACCCAACCTCCTT
TCCGCCGATCAACTCTTCCTCGATGGTGTCATCCTTCCCCTCCATCTCAT
ATCCAACAAACCCGAGCAGAAACCTGATTCTGATCAGGTACACAACTCAT
CTCCTGCCATGACCGATTATTCAACCATCAACACAATATCTAAGCGATGG
AAAAACATCTTTGGGAAGAAAAACAACAGCAATACAGAAGAGAAAGTGAA
GAAGAAGAAGAAGAATGAGAAAAAACTTGGAAAGGGTGGTTGTGGCGGTG
ACTCTTTTTCATCTGAACTTTACATCAATATATGGCCTTTCTCTCGGAGT
AAGTCAGCCAAAAACTCTGTCACCCGACCTAAATCAGTTCCGGTTACCCG
GAAAGTAAACAGCGCACCGTGCTCTAGAAGCAATTCCGCCGGAGATTCAA
AGTCAAGGAAGTTTCCTAGTAGTCTTGGTAGGGTGGGAGTCCATATTGGG
AGGAGCAGCCCCGTTTGGCGCCGTGGAGGCTCCGGTAAGAATACTGAAAC
ACTGTATATGAAAAATGATAAGACTAAAAGAGAAACTACCGTGAGTCACC
GGAGAAGGCTCACTACAGCCGCCGGTGGTGGTGGTGGTAATGTTCCGGTG
TGTGTTGGGTACAGTCGTAAGTTGCGCTGCAGAATGGAGGAGAGCAGTGG
CGGTAAGCTTTTGAATCTGCGCAACTTCTTCACCAAGAAAACCGTTCTAG
TAGTGTGA
back to top

protein sequence of Vfaba.Hedin2.R1.4g242600.1_vfh_v1

>Vfaba.Hedin2.R1.4g242600.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g242600.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g242600.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=285bp
MDTKSSKTQSPFLSSTSNRSPKRKSNNACSSPEFEFWMRRNPSLPQPNLL
SADQLFLDGVILPLHLISNKPEQKPDSDQVHNSSPAMTDYSTINTISKRW
KNIFGKKNNSNTEEKVKKKKKNEKKLGKGGCGGDSFSSELYINIWPFSRS
KSAKNSVTRPKSVPVTRKVNSAPCSRSNSAGDSKSRKFPSSLGRVGVHIG
RSSPVWRRGGSGKNTETLYMKNDKTKRETTVSHRRRLTTAAGGGGGNVPV
CVGYSRKLRCRMEESSGGKLLNLRNFFTKKTVLVV
back to top

mRNA from alignment at chr4:1642471744..1642472601+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.4g242600.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g242600.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g242600.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1642471744..1642472601+ (Vicia faba
back to top