Vfaba.Hedin2.R1.5g197400.1

Transcript Overview
NameVfaba.Hedin2.R1.5g197400.1
Unique NameVfaba.Hedin2.R1.5g197400.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length507
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:1354596545..1354597444 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR464Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR475Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL353Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL223Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL668Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0788Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL280Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL117Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL874Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL238Pisum sativum Cameor genome v1aPisum sativum
psvfhL252Pisum sativum Cameor genome v1aPisum sativum
vfhvfhL201Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL317Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL361Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR547Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR615Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL275Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0201Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0449Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivfhL928Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0851Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1244Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR600Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR496Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR582Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR558Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR627Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL192Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL603Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL221Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL643Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL191Cicer arietinum
carvfhL592Cicer arietinum
ccavfhL189Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL362Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR656Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR674Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR596Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR632Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL302Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL813Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR632Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR701Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL114Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL854Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR504Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR571Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g197400Vfaba.Hedin2.R1.5g197400_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g197400.1_vfh_v1-exonVfaba.Hedin2.R1.5g197400.1_vfh_v1-exon-chr5_vfh_v1:1354596545..1354596910Vicia fabaexon
Vfaba.Hedin2.R1.5g197400.1_vfh_v1-exonVfaba.Hedin2.R1.5g197400.1_vfh_v1-exon-chr5_vfh_v1:1354597304..1354597444Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g197400.1_vfh_v1-cdsVfaba.Hedin2.R1.5g197400.1_vfh_v1-cds-chr5_vfh_v1:1354596545..1354596910Vicia fabaCDS
Vfaba.Hedin2.R1.5g197400.1_vfh_v1-cdsVfaba.Hedin2.R1.5g197400.1_vfh_v1-cds-chr5_vfh_v1:1354597304..1354597444Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g197400.1_vfh_v1Vfaba.Hedin2.R1.5g197400.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.5g197400.1_vfh_v1Vfaba.Hedin2.R1.5g197400.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|G7JNT6|G7JNT6_MEDTR (Putative ribonuclease III OS=Medicago truncatula OX=3880 GN=11426389 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.767e-61
Identity = 98/116 (84.48%), Postives = 102/116 (87.93%), Query Frame = 0
Query:   53 SEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
            SEENNKAFSI G T IETSVSFNLLSKDVD+SAKE+NRRLSLISNVDSSCAVD  RLGLHKVVRVSPKTNSSSTAVVCGAFRSIF AI+LDTG  + AGNV LTVHGRDLG    M
Sbjct:   63 SEENNKAFSILGATSIETSVSFNLLSKDVDISAKELNRRLSLISNVDSSCAVDAKRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFGAISLDTGSSEAAGNVFLTVHGRDLGVYAAM 178          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MBB7|A0A2Z6MBB7_TRISU (RNase III domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_185740 PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.237e-60
Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 0
Query:   17 EHQSFSFLKPEIQTPSWLELE-----QDLNLHHTPSKINIISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
            + QSFS     +QT   L+ +      +LNL          SEENNKAFSI G TIIE++VSFNLLSKD+D+SAKE+NR+LSLISNVDSSCAVD + LGLHKVVRVSPKTN+SSTAVVCGAFRSIFAAIA+D G+ D+AGNV L VHGRDLG    M
Sbjct:   22 QGQSFSPFSSALQT---LQKQIGYNFTNLNLLRRAMTHASFSEENNKAFSIVGATIIESTVSFNLLSKDIDISAKELNRKLSLISNVDSSCAVDAMNLGLHKVVRVSPKTNTSSTAVVCGAFRSIFAAIAIDKGNTDSAGNVFLNVHGRDLGVYAAM 175          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YRP1|A0A1S2YRP1_CICAR (protein NUCLEAR FUSION DEFECTIVE 2 OS=Cicer arietinum OX=3827 GN=LOC101489876 PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 6.521e-60
Identity = 95/117 (81.20%), Postives = 102/117 (87.18%), Query Frame = 0
Query:   52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
             SEENNKAFSI+G TIIETSVSFNLLSKDVDVSAKE+NRR+SLISNVDSSCAVD +RL LHKVVRVSPKTNSSS +V+CGAFRSIF AIALD  + D AG V LTVHGRD G SM M
Sbjct:   58 FSEENNKAFSIFGATIIETSVSFNLLSKDVDVSAKELNRRISLISNVDSSCAVDAMRLSLHKVVRVSPKTNSSSPSVLCGAFRSIFGAIALDAENSDDAGKVFLTVHGRDFGVSMAM 174          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KUH5|A0A4D6KUH5_VIGUN (Ribonuclease III OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1416 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.849e-52
Identity = 84/112 (75.00%), Postives = 97/112 (86.61%), Query Frame = 0
Query:   52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
             SEENNKAF+I G T+IETSVSF+LLSKDVD+S KE+NRR+S I+NVDSSCAVDG RLGL K+VRVSPKTNSS+ AVVCGAFR+IFAAI++DTG  D AGNV   +HG DLG
Sbjct:   63 FSEENNKAFAILGATVIETSVSFHLLSKDVDISPKELNRRVSQITNVDSSCAVDGTRLGLQKIVRVSPKTNSSAPAVVCGAFRAIFAAISIDTGKSDDAGNVFWNLHGGDLG 174          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|V7CB75|V7CB75_PHAVU (RNase III domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G198700g PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.720e-52
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 0
Query:   52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
             SEENNKAF+I G T+IETSVSF+LLSKDVD+S KE+N RLS I+NVDSSCAVDG RLGLHK+VRVSPKTNSS+ AVVCGAFR+IFAAI++D+G  D AGNV   +HG +LG
Sbjct:   63 FSEENNKAFAILGATVIETSVSFHLLSKDVDISPKELNHRLSQITNVDSSCAVDGTRLGLHKIVRVSPKTNSSAPAVVCGAFRAIFAAISIDSGMPDNAGNVFWNLHGGELG 174          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UPN5|A0A1S3UPN5_VIGRR (protein NUCLEAR FUSION DEFECTIVE 2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767502 PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.209e-51
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0
Query:   52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
             SEENNKAF+I G  +IETSVSF+LLSKDVD+S KE+NRRLS +S+VDSSCAVDG RLGL K+VRVSPKTNSS+ AVVCGAFR+IFAAI++DTG  D AGNV   +HG DLG
Sbjct:   63 FSEENNKAFAILGAAVIETSVSFHLLSKDVDISPKELNRRLSQVSSVDSSCAVDGTRLGLQKIVRVSPKTNSSTPAVVCGAFRAIFAAISIDTGKSDDAGNVFWNLHGGDLG 174          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LJ38|A0A2K3LJ38_TRIPR (Ribonuclease 3-like protein OS=Trifolium pratense OX=57577 GN=L195_g034538 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.149e-51
Identity = 87/117 (74.36%), Postives = 99/117 (84.62%), Query Frame = 0
Query:   53 SEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGR-DLGFSMDM 168
            S+ENNKAFSI G TIIE++VSFNL+SK +D+SAKE+N +LSLISNVDSSCAVDG+ LGLHKVVRVS KTNSSSTAVVCGAFRSIFAAIA+DTG+   AGN  L +HG  DLG    M
Sbjct:   58 SQENNKAFSIVGATIIESTVSFNLISKYIDISAKELNHKLSLISNVDSSCAVDGINLGLHKVVRVSSKTNSSSTAVVCGAFRSIFAAIAIDTGNPCNAGNFFLNIHGGLDLGVYAAM 174          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R6E2|A0A0S3R6E2_PHAAN (RNase III domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G407200 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.156e-51
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0
Query:   52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
             SEENNKAF+I G  +IETSVSF+LLSKDVD+S KE+NRRLS I++VDSSCAVDG RLGL K+VRVSPKTNSS+ AVVCGAFR+IFAAI++DTG  D AGNV   +HG DLG
Sbjct:   63 FSEENNKAFAILGAAVIETSVSFHLLSKDVDISPKELNRRLSQITSVDSSCAVDGTRLGLQKIVRVSPKTNSSAPAVVCGAFRAIFAAISIDTGKSDDAGNVFWNLHGGDLG 174          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TQR0|A0A0L9TQR0_PHAAN (RNase III domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g238200 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.156e-51
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0
Query:   52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
             SEENNKAF+I G  +IETSVSF+LLSKDVD+S KE+NRRLS I++VDSSCAVDG RLGL K+VRVSPKTNSS+ AVVCGAFR+IFAAI++DTG  D AGNV   +HG DLG
Sbjct:   63 FSEENNKAFAILGAAVIETSVSFHLLSKDVDISPKELNRRLSQITSVDSSCAVDGTRLGLQKIVRVSPKTNSSAPAVVCGAFRAIFAAISIDTGKSDDAGNVFWNLHGGDLG 174          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|I1MTJ0|I1MTJ0_SOYBN (RNase III domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_17G091300 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.913e-51
Identity = 84/118 (71.19%), Postives = 101/118 (85.59%), Query Frame = 0
Query:   52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVH-GRDLGFSMDM 168
             SEENNKAF+I G ++IETSVSF+LLS+DVD+S+KE+NRRLS I+NVDSSCAVDG RLGLHKVVRVSPKTNSS+ AVVCGAFR+IF A+A+DTG  D AGNV   +H G DLG ++ +
Sbjct:   71 FSEENNKAFAILGASVIETSVSFHLLSRDVDLSSKELNRRLSQITNVDSSCAVDGTRLGLHKVVRVSPKTNSSAPAVVCGAFRAIFGAVAIDTGKSDDAGNVFWNLHGGGDLGVAVAL 188          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FYL8|NFD2_ARATH (Protein NUCLEAR FUSION DEFECTIVE 2 OS=Arabidopsis thaliana OX=3702 GN=NFD2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.782e-38
Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 0
Query:   53 SEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
            S+ENNKA SI+GT IIET+VS   L+KD+D+S+K + R +S +SNV+SSCA+DG RLGL K++RVS KT++S++A++C  FR+IF AIA+D G +D A  V   VHG   G  + M
Sbjct:   75 SQENNKALSIFGTHIIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIAIDAGTVDEAIKVFWKVHGARAGRLVSM 190          
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. Araport11
Match: AT1G24450.1 (| Ribonuclease III family protein | Chr1:8664201-8665077 FORWARD LENGTH=191 | 201606)

HSP 1 Score: 130.954 bits (328), Expect = 1.001e-38
Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 0
Query:   53 SEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
            S+ENNKA SI+GT IIET+VS   L+KD+D+S+K + R +S +SNV+SSCA+DG RLGL K++RVS KT++S++A++C  FR+IF AIA+D G +D A  V   VHG   G  + M
Sbjct:   75 SQENNKALSIFGTHIIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIAIDAGTVDEAIKVFWKVHGARAGRLVSM 190          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|G7JNT6|G7JNT6_MEDTR4.767e-6184.48Putative ribonuclease III OS=Medicago truncatula O... [more]
tr|A0A2Z6MBB7|A0A2Z6MBB7_TRISU3.237e-6065.61RNase III domain-containing protein OS=Trifolium s... [more]
tr|A0A1S2YRP1|A0A1S2YRP1_CICAR6.521e-6081.20protein NUCLEAR FUSION DEFECTIVE 2 OS=Cicer arieti... [more]
tr|A0A4D6KUH5|A0A4D6KUH5_VIGUN1.849e-5275.00Ribonuclease III OS=Vigna unguiculata OX=3917 GN=D... [more]
tr|V7CB75|V7CB75_PHAVU9.720e-5274.11RNase III domain-containing protein OS=Phaseolus v... [more]
tr|A0A1S3UPN5|A0A1S3UPN5_VIGRR1.209e-5174.11protein NUCLEAR FUSION DEFECTIVE 2 OS=Vigna radiat... [more]
tr|A0A2K3LJ38|A0A2K3LJ38_TRIPR2.149e-5174.36Ribonuclease 3-like protein OS=Trifolium pratense ... [more]
tr|A0A0S3R6E2|A0A0S3R6E2_PHAAN2.156e-5174.11RNase III domain-containing protein OS=Vigna angul... [more]
tr|A0A0L9TQR0|A0A0L9TQR0_PHAAN2.156e-5174.11RNase III domain-containing protein OS=Phaseolus a... [more]
tr|I1MTJ0|I1MTJ0_SOYBN3.913e-5171.19RNase III domain-containing protein OS=Glycine max... [more]
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BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9FYL8|NFD2_ARATH9.782e-3854.31Protein NUCLEAR FUSION DEFECTIVE 2 OS=Arabidopsis ... [more]
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BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G24450.11.001e-3854.31| Ribonuclease III family protein | Chr1:8664201-8... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10Ribonuclease III domaincoord: 13..162
e-value: 3.3E-6
score: 28.8
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 51..157

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.5g197400.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g197400.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g197400.1; organism=Vicia faba; type=mRNA; length=507bp
ATGATCAATCACCAAACTCAAGAAATACAAGGTTTCACATTAAAGAAAGA
GCATCAAAGTTTCAGTTTTCTAAAGCCAGAAATTCAAACACCATCATGGC
TTGAATTAGAACAAGATCTAAACCTTCATCACACCCCTTCCAAAATAAAC
ATTATCTCCGAAGAAAACAACAAAGCTTTCAGCATTTATGGTACTACCAT
CATAGAAACATCCGTTTCTTTCAATTTGCTTTCCAAAGACGTTGATGTTT
CTGCCAAAGAGGTGAATCGTCGATTATCGTTGATCTCCAATGTTGACTCT
TCTTGTGCCGTTGATGGACTGCGTTTGGGTTTGCACAAGGTGGTTCGTGT
TTCGCCCAAGACCAATTCTTCTTCCACTGCTGTGGTTTGTGGTGCTTTCC
GATCTATATTCGCTGCTATTGCTCTTGATACTGGCGATTTGGATACTGCT
GGTAATGTTCTCTTGACTGTTCATGGTCGTGATCTGGGCTTTTCTATGGA
TATGTGA
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protein sequence of Vfaba.Hedin2.R1.5g197400.1_vfh_v1

>Vfaba.Hedin2.R1.5g197400.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g197400.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g197400.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=168bp
MINHQTQEIQGFTLKKEHQSFSFLKPEIQTPSWLELEQDLNLHHTPSKIN
IISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDS
SCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTA
GNVLLTVHGRDLGFSMDM
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mRNA from alignment at chr5:1354596545..1354597444-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.5g197400.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g197400.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g197400.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1354596545..1354597444- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036389RNase_III_sf
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing