evm.model.Chr01.1688

Transcript Overview
Nameevm.model.Chr01.1688
Unique Nameevm.model.Chr01.1688_hau_v1
TypemRNA
OrganismVigna unguiculata subsp. sesquipedalis ()
Sequence length303
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01chromosomeChr01:43470551..43471038 +Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anvuaL0517Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0624Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0819Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0825Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0876Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuaL0978Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuaL084Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuaL375Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuaL536Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavuaL006Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuaL155Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuaL434Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuaL0617Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuaL0742Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuaL0905Cajanus cajan Asha genome v1.0Cajanus cajan
crvuaL006Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuaL218Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuaL310Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuaL159Pisum sativum Cameor genome v1aPisum sativum
psvuaL339Pisum sativum Cameor genome v1aPisum sativum
psvuaL486Pisum sativum Cameor genome v1aPisum sativum
pvvuaL000Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuaL116Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvuaL102Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvuaL407Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvuaL305Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuaL488Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuaL102Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuaL299Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuaL486Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuaL176Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuaL218Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vuavuaR005Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuavuaR015Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vssvuaL006Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuazwsR020Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuazwsR034Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuazwsR042Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuazwsR057Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuvuaL000Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvuaL140Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaL070Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvuaL385Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaL245Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvuaL679Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaL008Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuaL134Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuaL393Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Ca_00822Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan03g245900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_31118Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_05419.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_004494161.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg31708.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_029753Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014639536.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.001G192800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat03G0127400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun01g176700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
evm.TU.Chr01.1688evm.TU.Chr01.1688_hau_v1Vigna unguiculata subsp. sesquipedalisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr01.1688.exon1evm.model.Chr01.1688.exon1_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr01.1688.exon2evm.model.Chr01.1688.exon2_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr01.1688.exon3evm.model.Chr01.1688.exon3_hau_v1Vigna unguiculata subsp. sesquipedalisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.evm.model.Chr01.1688cds.evm.model.Chr01.1688_hau_v1Vigna unguiculata subsp. sesquipedalisCDS
cds.evm.model.Chr01.1688cds.evm.model.Chr01.1688_hau_v1_2Vigna unguiculata subsp. sesquipedalisCDS
cds.evm.model.Chr01.1688cds.evm.model.Chr01.1688_hau_v1_3Vigna unguiculata subsp. sesquipedalisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr01.1688_hau_v1evm.model.Chr01.1688_hau_v1Vigna unguiculata subsp. sesquipedalispolypeptide
evm.model.Chr01.1688_hau_v1evm.model.Chr01.1688_hau_v1-proteinVigna unguiculata subsp. sesquipedalispolypeptide


Homology
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FFZ6|RBP11_ARATH (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.622e-19
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 0 
Query:    6 WFLGVFSGLSFCTTEKALSEAFSNYGQVIEG------YQTDQRDWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKP--NINTNGAMPIARGPPEP 96
             F+G   GLSFCTTE+ LSEAFS  GQV+E            + +G          + A+ +  G+ LNGR IFVDYAK   ++   G  PIARGPP+P
Sbjct:   36 LFIG---GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131
[Close]
BLAST of evm.model.Chr01.1688 vs. Araport11
Match: AT5G06210.1 (| RNA binding (RRM/RBD/RNP motifs) family protein | Chr5:1878497-1879515 FORWARD LENGTH=146 | 201606)

HSP 1 Score: 79.337 bits (194), Expect = 4.729e-20
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 0 
Query:    6 WFLGVFSGLSFCTTEKALSEAFSNYGQVIEG------YQTDQRDWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKP--NINTNGAMPIARGPPEP 96
             F+G   GLSFCTTE+ LSEAFS  GQV+E            + +G          + A+ +  G+ LNGR IFVDYAK   ++   G  PIARGPP+P
Sbjct:   36 LFIG---GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6M9V1|A0A4D6M9V1_VIGUN (Cold-inducible RNA-binding protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2801 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 5.370e-50
Identity = 82/106 (77.36%), Postives = 83/106 (78.30%), Query Frame = 0 
Query:    1 MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEGYQTDQR------DWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 100
            MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIE      R       +G          ENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT
Sbjct:    1 MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEAKVVTDRVSDRSKGFGFVTFASPDEAENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 106
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RZ88|A0A0S3RZ88_PHAAN (RRM domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G349100 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.516e-36
Identity = 65/106 (61.32%), Postives = 72/106 (67.92%), Query Frame = 0 
Query:    1 MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEGYQTDQR------DWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 100
              RG  +     GLSFCTT+KALSEAFSNYGQV+E      R       +G          ENAIA+MKGKTLNGRVIFVDYAKPN N+ GAMPIARGPPEPTP+T
Sbjct:   23 FRRGIAYKLFVGGLSFCTTQKALSEAFSNYGQVLEAKVVTDRVSDRSKGFGFVTYASADEAENAIAEMKGKTLNGRVIFVDYAKPNTNSKGAMPIARGPPEPTPET 128
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9U8X9|A0A0L9U8X9_PHAAN (RRM domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g245900 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.516e-36
Identity = 65/106 (61.32%), Postives = 72/106 (67.92%), Query Frame = 0 
Query:    1 MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEGYQTDQR------DWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 100
              RG  +     GLSFCTT+KALSEAFSNYGQV+E      R       +G          ENAIA+MKGKTLNGRVIFVDYAKPN N+ GAMPIARGPPEPTP+T
Sbjct:   23 FRRGIAYKLFVGGLSFCTTQKALSEAFSNYGQVLEAKVVTDRVSDRSKGFGFVTYASADEAENAIAEMKGKTLNGRVIFVDYAKPNTNSKGAMPIARGPPEPTPET 128
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|A0A151S1C2|A0A151S1C2_CAJCA (Glycine-rich RNA-binding protein 2 OS=Cajanus cajan OX=3821 GN=KK1_029753 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.113e-36
Identity = 68/104 (65.38%), Postives = 73/104 (70.19%), Query Frame = 0 
Query:    3 RGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEG-YQTDQ-----RDWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 100
            RG  +     GLSF TTEKALSEAFSNYGQVIE    TD+     + +G      Q   ENAIA+MKGK LNGRVIFVDYAKPN NT G MPIARGPPEPTPDT
Sbjct:   23 RGIAYKLFVGGLSFYTTEKALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIAEMKGKALNGRVIFVDYAKPNTNTGGGMPIARGPPEPTPDT 126
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|A0A371I8M0|A0A371I8M0_MUCPR (Small RNA-binding protein 11, chloroplastic (Fragment) OS=Mucuna pruriens OX=157652 GN=S-RBP11 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.584e-35
Identity = 66/104 (63.46%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:    3 RGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEG-YQTDQ-----RDWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 100
            RG  +     GLSF TTEKALS+AFSNYGQV+E    TD+     + +G      Q   ENAIA+MKGKTLNGRV+FVDYAKPNINT G MPIARGPPEPT DT
Sbjct:   23 RGIAYKLFVGGLSFYTTEKALSDAFSNYGQVVEAKIVTDRVSDRSKGFGFVTFASQDEAENAIAEMKGKTLNGRVVFVDYAKPNINTGGGMPIARGPPEPTADT 126
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TMP2|A0A1S3TMP2_VIGRR (small RNA-binding protein 11, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106756939 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.998e-34
Identity = 65/106 (61.32%), Postives = 71/106 (66.98%), Query Frame = 0 
Query:    1 MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEGYQTDQR------DWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 100
              RG  +     GLSF TTEKALSEAFSNYGQV+E      R       +G          ENAIA+MKGKTLNGRVIFVDYAKPN N NGAMPIARGPP+PTP+T
Sbjct:   54 FRRGIAYKLFVGGLSFFTTEKALSEAFSNYGQVLEAKVVTDRVSERSKGFGFVTFASADEAENAIAEMKGKTLNGRVIFVDYAKPNTNINGAMPIARGPPKPTPET 159
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|V7D091|V7D091_PHAVU (RRM domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G192800g PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.983e-34
Identity = 65/106 (61.32%), Postives = 70/106 (66.04%), Query Frame = 0 
Query:    1 MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEGYQTDQR------DWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 100
              RG  +     GLSF TTEKALS+AFSNYGQVIE      R       +G          ENAI +MKGKT+NGRVIFVDYAKPNIN N AMPIARGPPEPTPDT
Sbjct:   44 FRRGIAYKLFVGGLSFYTTEKALSDAFSNYGQVIEAKVVTDRVSDRSKGFGFVTFASPDEAENAITEMKGKTINGRVIFVDYAKPNINGNAAMPIARGPPEPTPDT 149
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|C6T383|C6T383_SOYBN (RRM domain-containing protein OS=Glycine max OX=3847 GN=100527079 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.396e-34
Identity = 68/108 (62.96%), Postives = 73/108 (67.59%), Query Frame = 0 
Query:    1 MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEG-YQTDQ-----RDWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEP--TPDT 100
              RG  +     GLSF TTE ALSEAFSNYGQVIE    TD+     + +G      Q   ENAI DMKGKTLNGRVIFVDYAKPNINT G +PIARGPPEP  TPDT
Sbjct:   23 FRRGIAYKLFVGGLSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIEDMKGKTLNGRVIFVDYAKPNINTRGEIPIARGPPEPTSTPDT 130
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|A0A445LEE9|A0A445LEE9_GLYSO (Small RNA-binding protein 11, chloroplastic OS=Glycine soja OX=3848 GN=D0Y65_007676 PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-33
Identity = 68/108 (62.96%), Postives = 73/108 (67.59%), Query Frame = 0 
Query:    1 MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEG-YQTDQ-----RDWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEP--TPDT 100
              RG  +     GLSF TTE ALSEAFSNYGQVIE    TD+     + +G      Q   ENAI DMKGKTLNGRVIFVDYAKPNINT G +PIARGPPEP  TPDT
Sbjct:   45 FRRGIAYKLFVGGLSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIEDMKGKTLNGRVIFVDYAKPNINTRGEIPIARGPPEPTSTPDT 152
[Close]
BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Match: tr|A0A6J5VFZ2|A0A6J5VFZ2_PRUAR (RRM domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44918 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.826e-24
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = 0 
Query:   13 GLSFCTTEKALSEAFSNYGQVIEGYQTDQR------DWGLSPLLHQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 100
            GLSF T +K LSEAFS YGQVIE      R       +G      +     A+ +M GK LNGRVIFVDYAKP +N  G MPIARGPP+PT D+
Sbjct:   39 GLSFYTNDKGLSEAFSQYGQVIEAQIVTDRVSDRSKGFGFVTFASEDEAHKALEEMNGKALNGRVIFVDYAKPKVNYGGGMPIARGPPDPTKDS 132
The following BLAST results are available for this feature:
BLAST of evm.model.Chr01.1688 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9FFZ6|RBP11_ARATH4.622e-1943.43Small RNA-binding protein 11, chloroplastic OS=Ara... [more]
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BLAST of evm.model.Chr01.1688 vs. Araport11
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G06210.14.729e-2043.43| RNA binding (RRM/RBD/RNP motifs) family protein ... [more]
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BLAST of evm.model.Chr01.1688 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A4D6M9V1|A0A4D6M9V1_VIGUN5.370e-5077.36Cold-inducible RNA-binding protein OS=Vigna unguic... [more]
tr|A0A0S3RZ88|A0A0S3RZ88_PHAAN3.516e-3661.32RRM domain-containing protein OS=Vigna angularis v... [more]
tr|A0A0L9U8X9|A0A0L9U8X9_PHAAN3.516e-3661.32RRM domain-containing protein OS=Phaseolus angular... [more]
tr|A0A151S1C2|A0A151S1C2_CAJCA6.113e-3665.38Glycine-rich RNA-binding protein 2 OS=Cajanus caja... [more]
tr|A0A371I8M0|A0A371I8M0_MUCPR1.584e-3563.46Small RNA-binding protein 11, chloroplastic (Fragm... [more]
tr|A0A1S3TMP2|A0A1S3TMP2_VIGRR1.998e-3461.32small RNA-binding protein 11, chloroplastic OS=Vig... [more]
tr|V7D091|V7D091_PHAVU5.983e-3461.32RRM domain-containing protein OS=Phaseolus vulgari... [more]
tr|C6T383|C6T383_SOYBN8.396e-3462.96RRM domain-containing protein OS=Glycine max OX=38... [more]
tr|A0A445LEE9|A0A445LEE9_GLYSO2.368e-3362.96Small RNA-binding protein 11, chloroplastic OS=Gly... [more]
tr|A0A6J5VFZ2|A0A6J5VFZ2_PRUAR2.826e-2453.19RRM domain-containing protein OS=Prunus armeniaca ... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0
Date Performed: 2023-06-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 10..85
e-value: 7.6E-7
score: 31.2
NoneNo IPR availablePANTHERPTHR48027HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATEDcoord: 12..36
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 12..84

Sequences
The following sequences are available for this feature:

mRNA sequence

>evm.model.Chr01.1688_hau_v1 ID=evm.model.Chr01.1688_hau_v1; Name=evm.model.Chr01.1688; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=303bp
ATGGAGAGGGGTTATTGGTTCCTCGGTGTTTTTTCAGGACTTTCCTTTTG
CACCACAGAGAAAGCACTGTCAGAGGCATTTTCCAACTACGGGCAAGTTA
TTGAAGGGTATCAGACAGATCAAAGGGATTGGGGTTTGTCACCTTTGCTT
CACCAGATGAGGCCTGAGAATGCCATAGCAGACATGAAAGGAAAGACATT
AAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATATCAACACTA
ATGGTGCAATGCCAATTGCTAGAGGACCTCCTGAACCAACACCAGACACT
TGA
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protein sequence of evm.model.Chr01.1688_hau_v1

>evm.model.Chr01.1688_hau_v1 ID=evm.model.Chr01.1688_hau_v1; Name=evm.model.Chr01.1688_hau_v1; organism=Vigna unguiculata subsp. sesquipedalis; type=polypeptide; length=100bp
MERGYWFLGVFSGLSFCTTEKALSEAFSNYGQVIEGYQTDQRDWGLSPLL
HQMRPENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT
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mRNA from alignment at Chr01:43470551..43471038+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>evm.model.Chr01.1688_hau_v1 ID=evm.model.Chr01.1688_hau_v1; Name=evm.model.Chr01.1688; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=488bp; location=Sequence derived from: Chr01:43470551..43471038+ (Vigna unguiculata subsp. sesquipedalis
ATGGAGAGGGGTTATTGGTTCCTCGGTGTTTTTTCAGGACTTTCCTTTTG
CACCACAGAGAAAGCACTGTCAGAGGCATTTTCCAACTACGGGCAAGTTA
TTGAAGGTATCAACATTAATCCATTCTGTGTCATCTCACTGTATGATTTT
TCTGGCCTTTAACAATAACGCTGATGAATTTCTGGTTTTTCAGCCAAGTT
GTAACAGATAGGGTATCAGACAGATCAAAGGGATTGGGGTTTGTCACCTT
TGCTTCACCAGATGAGGCCTGAGAATGCCATAGCAGACATGAAAGGAAAG
GTAAGGATCAAATTTGGGACTGTTCTGTTCTTTGTTGGCTTGGAACTTAG
AAGTGAGGATTGACAGAAACTTTTTTGCAGACATTAAATGGACGTGTTAT
CTTTGTTGATTATGCAAAACCCAATATCAACACTAATGGTGCAATGCCAA
TTGCTAGAGGACCTCCTGAACCAACACCAGACACTTGA
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Coding sequence (CDS) from alignment at Chr01:43470551..43471038+

>evm.model.Chr01.1688_hau_v1 ID=evm.model.Chr01.1688_hau_v1; Name=evm.model.Chr01.1688; organism=Vigna unguiculata subsp. sesquipedalis; type=CDS; length=303bp; location=Sequence derived from: Chr01:43470551..43471038+ (Vigna unguiculata subsp. sesquipedalis
ATGGAGAGGGGTTATTGGTTCCTCGGTGTTTTTTCAGGACTTTCCTTTTG
CACCACAGAGAAAGCACTGTCAGAGGCATTTTCCAACTACGGGCAAGTTA
TTGAAGGGTATCAGACAGATCAAAGGGATTGGGGTTTGTCACCTTTGCTT
CACCAGATGAGGCCTGAGAATGCCATAGCAGACATGAAAGGAAAGACATT
AAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATATCAACACTA
ATGGTGCAATGCCAATTGCTAGAGGACCTCCTGAACCAACACCAGACACT
TGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding