rna-XM_014656435.1

Transcript Overview
Namerna-XM_014656435.1
Unique Namerna-XM_014656435.1_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length1467
Productuncharacterized LOC106770634
References
External references for this mRNA
DatabaseAccession
GeneID106770634
GenbankXM_014656435.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr08chromosomechr08:39412297..39413763 -Vigna radiata cv. VC1973A genome v6.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
asvrvL254Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvrvL352Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvrvL362Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ccvrvL0347Cajanus cajan Asha genome v1.0Cajanus cajan
ccvrvL0710Cajanus cajan Asha genome v1.0Cajanus cajan
tifvrvL383Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvrvL398Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvssR748Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuaR589Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuaR599Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvrvL311Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvrvL300Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvrvL311Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvrvL407Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
vrvvumR640Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvstR632Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR661Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR680Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR690Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvrvL187Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL416Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL589Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL601Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vrvvunR581Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR606Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC106770634gene-LOC106770634_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_014656435.1-1exon-XM_014656435.1-1_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_014511921.1cds-XP_014511921.1_VrVC1973A-SNU_v1Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_014656435.1_VrVC1973A-SNU_v1rna-XM_014656435.1_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_014656435.1_VrVC1973A-SNU_v1rna-XM_014656435.1_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V0Q3|A0A1S3V0Q3_VIGRR (uncharacterized protein LOC106770634 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770634 PE=4 SV=1)

HSP 1 Score: 1026.16 bits (2652), Expect = 0.000e+0
Identity = 488/488 (100.00%), Postives = 488/488 (100.00%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMDK 488
            MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMDK
Sbjct:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMDK 488          
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VX08|A0A1S3VX08_VIGRR (uncharacterized protein LOC106779175 OS=Vigna radiata var. radiata OX=3916 GN=LOC106779175 PE=4 SV=1)

HSP 1 Score: 882.093 bits (2278), Expect = 0.000e+0
Identity = 426/488 (87.30%), Postives = 445/488 (91.19%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMDK 488
            MENQEEVQEEMK DIQQLKGQMSQILEALNALQ PGDSRAPRPQQRASEAQTFPPYGLPPNYT PS EDLGHADTQEVKDNAVEAEDKLGANTAIIH ETTQSG+A VIM +QP+MKSS +VV    F+    +LEMLEK+LRVIEGKDVFEFGDARKLCLVPDVVIPPKFKL EF KYRGNTCPRSHITMYCRKMAAYA+ EKLLIHFFQESLT VALSWYMRLE T ICS KDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREI AQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIAL+P LVANLNEYGLGQE      ANSHFTAYPQ SHSYGSNR ++QR +NRNEKVVNFTPIPMTYTELL DLLRNNLI+VCPTR +RPPYPK YD+N RCDYHEG RGHST+ C+AL+HKVQSLIDSGCLKFEESQSS  ARR+ ASANAMDK
Sbjct:    1 MENQEEVQEEMKADIQQLKGQMSQILEALNALQDPGDSRAPRPQQRASEAQTFPPYGLPPNYTPPSGEDLGHADTQEVKDNAVEAEDKLGANTAIIHEETTQSGMANVIMIEQPEMKSSHYVVAPTNFE----KLEMLEKKLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLPEFEKYRGNTCPRSHITMYCRKMAAYAYHEKLLIHFFQESLTSVALSWYMRLEPTDICSWKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIAAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALNPNLVANLNEYGLGQE------ANSHFTAYPQTSHSYGSNRAMEQRKYNRNEKVVNFTPIPMTYTELLQDLLRNNLIKVCPTRSVRPPYPKNYDINVRCDYHEGARGHSTKACKALRHKVQSLIDSGCLKFEESQSSTVARRDLASANAMDK 478          
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3W1U5|A0A1S3W1U5_VIGRR (uncharacterized protein LOC106780739 OS=Vigna radiata var. radiata OX=3916 GN=LOC106780739 PE=4 SV=1)

HSP 1 Score: 847.425 bits (2188), Expect = 0.000e+0
Identity = 407/488 (83.40%), Postives = 434/488 (88.93%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMDK 488
            MENQ E+Q+ MK DIQQLKGQM QILEAL+ALQS GDSRAPRPQQRASE QTFPPYGLPPNYT PSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIM+K P+MKSSP+ V   +F+    +LEMLEK+LRVIEGKDVFEFGDAR+LCLVPDVVIPPKFKL EF KYRGNTCPRSHITMYCRKM AYAHDEKLLIHFFQESLTGVAL+WYMRLE TH+ S KDLVDAFVRQYEYNKDL PDR+QLQ+MVK E ESFREYAQRWREI AQVEPPLSDKEM  IFLNTLQ PFYEHMISSVSSSFADIVVIGERVE GIRNGKI L P +VA+LNEYG  +E+ R+ K NSHFTAY Q S SYGSNR ++QR +NRNEKVVNFTPIPM YTELLPDLLRNNLI VCPTRP+RPPYPK YD+NARCDYHEG RGHSTE C+ALKHKVQSLI SGCLKFEESQ +  ARRE  SANAMDK
Sbjct:    1 MENQGEIQDRMKADIQQLKGQMIQILEALSALQSLGDSRAPRPQQRASEVQTFPPYGLPPNYTPPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMSKSPEMKSSPYAVXPTDFE----KLEMLEKKLRVIEGKDVFEFGDARELCLVPDVVIPPKFKLPEFEKYRGNTCPRSHITMYCRKMTAYAHDEKLLIHFFQESLTGVALNWYMRLEATHVYSWKDLVDAFVRQYEYNKDLAPDRVQLQSMVKKEFESFREYAQRWREIAAQVEPPLSDKEMAIIFLNTLQSPFYEHMISSVSSSFADIVVIGERVEXGIRNGKITLVPNMVASLNEYGPRREKGREPKTNSHFTAYSQTSISYGSNRAMEQRKYNRNEKVVNFTPIPMNYTELLPDLLRNNLIXVCPTRPVRPPYPKNYDINARCDYHEGARGHSTEACKALKHKVQSLIXSGCLKFEESQYNIVARRESTSANAMDK 484          
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VTW8|A0A1S3VTW8_VIGRR (uncharacterized protein LOC106778386 OS=Vigna radiata var. radiata OX=3916 GN=LOC106778386 PE=4 SV=1)

HSP 1 Score: 843.188 bits (2177), Expect = 0.000e+0
Identity = 406/488 (83.20%), Postives = 434/488 (88.93%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMDK 488
            MENQ EVQE MK DIQQLKGQ SQILEALNALQSPGDS+APRPQ RASEAQTFPPYGLPPNYT  S EDLGH D Q+V+DN VE EDKLGA+T +IHGETTQSG+A VIMT+QP+MKSS + V    F+    +LEMLEK+LRVIEGKDVFEFGDARKLCLV DVVIPPKFKL EF KYRGNTCP SHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLE  HICS KDLVDAFVRQY+YNKDLRPDRLQLQNMVKNESESFREYAQRWREI AQVEPPL+DKEMTTIFLNTLQ PFYEHMISSVSSSFADIVVIGERVEGGIRNGKIAL P +VA+LNEYG  +E+NR+ K NSH TAY Q SHSYGSNR I+QR +NRNEKVVNFTPIPMTY +LLPDLLRNNLI+VCPTR +RP YPK YD+N RCDYHEG RGHS E C+ALKHKVQSLIDSGCLKFEES+S+  ARREFASANAMDK
Sbjct:    1 MENQGEVQEGMKADIQQLKGQKSQILEALNALQSPGDSQAPRPQPRASEAQTFPPYGLPPNYTPLSGEDLGHVDNQKVEDNVVEVEDKLGADTVVIHGETTQSGMANVIMTEQPEMKSSHYAVAPTGFE----KLEMLEKKLRVIEGKDVFEFGDARKLCLVTDVVIPPKFKLPEFEKYRGNTCPGSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLEPAHICSWKDLVDAFVRQYKYNKDLRPDRLQLQNMVKNESESFREYAQRWREIVAQVEPPLNDKEMTTIFLNTLQSPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALVPNMVASLNEYGPRREKNREPKTNSHLTAYSQTSHSYGSNRAIEQRKYNRNEKVVNFTPIPMTYAKLLPDLLRNNLIKVCPTRSVRPLYPKNYDINVRCDYHEGARGHSIEACKALKHKVQSLIDSGCLKFEESRSNTVARREFASANAMDK 484          
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TMP5|A0A1S3TMP5_VIGRR (uncharacterized protein LOC106756962 OS=Vigna radiata var. radiata OX=3916 GN=LOC106756962 PE=4 SV=1)

HSP 1 Score: 828.55 bits (2139), Expect = 0.000e+0
Identity = 401/488 (82.17%), Postives = 431/488 (88.32%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMDK 488
            MENQ EVQE MKVDIQQLKGQMSQILEAL+ALQSP DSRAPR Q R S A T PP+GLPPNYT  SREDLG+ D Q+V+DNAVE EDKLGA+TAII+GETTQSG+A VIMTK P+M+SS + VT  +F+    +LEMLEK+LR IEGK VFEFGDARKLCLV DVVIPPKFKL EF KYRGNTCPRSHITMYCRKMAAY HDEKLLIHFFQESLTGVALSWYMRLE THICS KDLVDAF+RQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREI AQVEPPL+D EMTTIFLNTLQ PFYEHMISSVSSSFADIVV+GERVEGGIRNGKIAL P +VA+LNEYG   E+ R+ K NSHFT Y Q SHSYGSNR  +QR +NR EKVVNFTPIPMTYTELLPDLL NNLI+VCPTR +RPPYPKKYD+NARCDYHEG RGHSTE C+AL+HKVQSLIDSGCLKFEE QS+  ARREFASANAMDK
Sbjct:    1 MENQGEVQEGMKVDIQQLKGQMSQILEALSALQSPRDSRAPRSQIRVSGAPTLPPHGLPPNYTPLSREDLGNVDNQKVEDNAVEVEDKLGADTAIINGETTQSGMANVIMTKPPEMESSXYGVTPTDFE----KLEMLEKKLRAIEGKXVFEFGDARKLCLVLDVVIPPKFKLPEFEKYRGNTCPRSHITMYCRKMAAYTHDEKLLIHFFQESLTGVALSWYMRLEPTHICSWKDLVDAFIRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIVAQVEPPLNDNEMTTIFLNTLQSPFYEHMISSVSSSFADIVVVGERVEGGIRNGKIALVPXMVASLNEYGPRHEKGREPKTNSHFTTYSQTSHSYGSNRATEQRKYNRKEKVVNFTPIPMTYTELLPDLLHNNLIKVCPTRSVRPPYPKKYDINARCDYHEGTRGHSTEACKALRHKVQSLIDSGCLKFEEIQSNTVARREFASANAMDK 484          
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VMZ0|A0A1S3VMZ0_VIGRR (uncharacterized protein LOC106776790 OS=Vigna radiata var. radiata OX=3916 GN=LOC106776790 PE=4 SV=1)

HSP 1 Score: 818.92 bits (2114), Expect = 0.000e+0
Identity = 405/487 (83.16%), Postives = 436/487 (89.53%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMD 487
            MENQ EVQE MK DIQQLKGQMSQILEALNALQ PGDS+APRPQ RA EAQTFPP+GLPPNYT PS  DL H +TQ+V+DNAVE EDKLGA+TAIIHGETTQSG+A VIMTK P+++SSP+ VT  EF+    +LEML K+LR I+GK VFEFGDARKLCLVPDVVIPPKFKL EF KYRGNTCPR+HITMYCRKM AY HDEKLLIH FQESLTGVALSWYMRLET HI + KDLVDAF+RQYEYN+D+ PDR+QLQNMVK ESESFREYAQRWREI AQVEPP SDKEMTTIFLNTLQPPFYEHMISS SSSFADIVVIGERVEGGIRNGKI LDP LVA+LNEYGLGQEE RKQKANSHFTA  QMSHSYG NR I++RN+NRNEKVVNFTPIPMTYT+LLPDLLRNNLIEVCPTRP RPPYPKKYD+NARCDYHEG RGHSTE C+ALKHKVQSLID GCLKFEESQ S +ARREF +ANA+D
Sbjct:    1 MENQGEVQEGMKFDIQQLKGQMSQILEALNALQRPGDSQAPRPQPRALEAQTFPPHGLPPNYTPPSGADLRHVNTQKVEDNAVEIEDKLGADTAIIHGETTQSGMANVIMTKPPEIESSPYGVTPTEFE----KLEMLGKKLRAIKGKHVFEFGDARKLCLVPDVVIPPKFKLPEFEKYRGNTCPRNHITMYCRKMTAYTHDEKLLIHLFQESLTGVALSWYMRLETAHIYTWKDLVDAFLRQYEYNEDITPDRVQLQNMVKKESESFREYAQRWREIAAQVEPPRSDKEMTTIFLNTLQPPFYEHMISSASSSFADIVVIGERVEGGIRNGKITLDPNLVASLNEYGLGQEEKRKQKANSHFTARSQMSHSYGFNRAIEERNYNRNEKVVNFTPIPMTYTQLLPDLLRNNLIEVCPTRPTRPPYPKKYDINARCDYHEGARGHSTEACKALKHKVQSLIDLGCLKFEESQPSTKARREFVAANAID 483          
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3T995|A0A1S3T995_VIGRR (uncharacterized protein LOC106753068 OS=Vigna radiata var. radiata OX=3916 GN=LOC106753068 PE=4 SV=1)

HSP 1 Score: 806.979 bits (2083), Expect = 0.000e+0
Identity = 388/488 (79.51%), Postives = 421/488 (86.27%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMDK 488
            MENQ EVQE MK DIQQLKGQMSQILEALNALQSPGDS+APR Q RA EAQTFPPYGLP NYT  S EDLG  D Q+V+DNAVE EDKLG +TA+I+GETT  G+A VIM K PKM+SSP+ VT  +F+    +LEMLEK+ R IEGKDVFEFGDARKLCLVPDVVIPPKFK  EF KYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVAL+WYM LETTH+ S KDLVDAF+ QYEY KDL PDR+QLQNM K ESESFREYAQRWREI AQVEPPL+DKEMTT F+NTLQPPFYEH +SSVSSSFADIVVIGERVEGGIRNGKIAL P +VA+LNEYG  +E+NR+ K NSHFTAY Q SHSYGSNR ++QR +NRNEKVVNFT IP TYTE LPDL  NNLI+VCPTR +RPPYPK YD+N RCDYHEG RGH TE C+AL+HKVQSLIDSGCLKFEESQSS   RREFASANAMDK
Sbjct:    1 MENQGEVQEGMKADIQQLKGQMSQILEALNALQSPGDSQAPRQQPRALEAQTFPPYGLPSNYTPLSGEDLGQVDNQKVEDNAVEVEDKLGTDTALINGETTHLGVANVIMIKPPKMESSPYGVTPTDFE----KLEMLEKKFRAIEGKDVFEFGDARKLCLVPDVVIPPKFKFPEFEKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALNWYMHLETTHVYSWKDLVDAFLTQYEYIKDLTPDRVQLQNMAKKESESFREYAQRWREIAAQVEPPLNDKEMTTTFMNTLQPPFYEHTLSSVSSSFADIVVIGERVEGGIRNGKIALVPNMVASLNEYGPRREKNREPKTNSHFTAYSQTSHSYGSNRAMEQRKYNRNEKVVNFTXIPXTYTEXLPDLXXNNLIKVCPTRSVRPPYPKNYDINVRCDYHEGARGHLTEACKALRHKVQSLIDSGCLKFEESQSSTVTRREFASANAMDK 484          
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TSF4|A0A1S3TSF4_VIGRR (uncharacterized protein LOC106758228 OS=Vigna radiata var. radiata OX=3916 GN=LOC106758228 PE=4 SV=1)

HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0
Identity = 371/455 (81.54%), Postives = 406/455 (89.23%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCRALKHK 455
            MENQ EVQE MK DIQQLKGQMSQILEAL+ALQSP  SRAPRPQQRASE QTFPPYGLPPNY  PS +D GHADTQEVKDNAVE EDKLG +TAIIHGET Q+G+A +IMT+ P+MK SP+ VT  +F+    +LEMLEK+LR IEGKDVFEFGDAR+LCLVPDVVIPPKF+L EF KYRGNTCPRSHITMYCRKM AYAHDEKLLIHFFQESLTGVAL+WYMRL+TTHI S KDLVDAF+RQYEYNKDL PDR+QLQ+MVK E ESFREYAQRWREI AQVE PLSDKEMTTIFLNTLQPPFYEHMISSVSS+FADIV+IGERVE GIR+GKIA DP +VA LNEYG   E+++++  N HFTAY QM+HSYGSNR IKQRNHNRNEKVVNFTPIPMTYT+LLPDLLRNNLI+VCPTR +RPPYPK YD+NARCDYHEG RGHSTETC+ALKHK
Sbjct:    1 MENQGEVQERMKADIQQLKGQMSQILEALSALQSPEGSRAPRPQQRASEVQTFPPYGLPPNYITPSGKDSGHADTQEVKDNAVEVEDKLGVDTAIIHGETIQAGMANMIMTESPEMKFSPYAVTPTDFE----KLEMLEKKLRAIEGKDVFEFGDARRLCLVPDVVIPPKFRLPEFEKYRGNTCPRSHITMYCRKMTAYAHDEKLLIHFFQESLTGVALNWYMRLDTTHIHSWKDLVDAFLRQYEYNKDLTPDRVQLQSMVKKEFESFREYAQRWREIDAQVELPLSDKEMTTIFLNTLQPPFYEHMISSVSSNFADIVIIGERVESGIRSGKIAQDPNMVAFLNEYGPRHEKSKERIDNLHFTAYSQMAHSYGSNRTIKQRNHNRNEKVVNFTPIPMTYTKLLPDLLRNNLIKVCPTRSVRPPYPKNYDINARCDYHEGARGHSTETCKALKHK 451          
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UJW6|A0A1S3UJW6_VIGRR (uncharacterized protein LOC106765987 OS=Vigna radiata var. radiata OX=3916 GN=LOC106765987 PE=4 SV=1)

HSP 1 Score: 723.005 bits (1865), Expect = 0.000e+0
Identity = 348/414 (84.06%), Postives = 371/414 (89.61%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLGQEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTYTELLPDLLRNNLIE 414
            MENQ EVQ+ MK +IQQLKGQMSQILEALNALQ PGDS APRPQQRAS+AQTFPPYGLPPNYT PS EDLGHADTQEVKDNAVEAEDKLGANT IIHGETTQSG+A VIMTKQP+MKSS +VV   + +    +LEMLEK+LR IEG+  FEFGDARKLCLVPDVVIPPKFKL EF KYRG TCPRSHITMYCRKM AY HDEKLLIHFFQESLTGV L WYMRLE THICS KDLVDAF+RQY+YNK LRPDRLQLQNMVKNESESFREYAQRWREI AQVEPPLSDKEMT+IFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGG+RNGKIAL P +VA+LNEYG  +E+NRK K NSHFT Y Q SHSYGSNR ++QR +NRNEKVVNFTPIPMTYTELLPDLLRNNLI+
Sbjct:    1 MENQGEVQKGMKANIQQLKGQMSQILEALNALQDPGDSWAPRPQQRASKAQTFPPYGLPPNYTPPSGEDLGHADTQEVKDNAVEAEDKLGANTVIIHGETTQSGMANVIMTKQPEMKSSHYVVAPTDVE----KLEMLEKKLRAIEGEGSFEFGDARKLCLVPDVVIPPKFKLPEFEKYRGKTCPRSHITMYCRKMTAYTHDEKLLIHFFQESLTGVTLCWYMRLEPTHICSWKDLVDAFIRQYKYNKHLRPDRLQLQNMVKNESESFREYAQRWREIVAQVEPPLSDKEMTSIFLNTLQPPFYEHMISSVSSSFADIVVIGERVEGGVRNGKIALAPNMVASLNEYGPRREKNRKPKTNSHFTTYSQTSHSYGSNRAVEQRKYNRNEKVVNFTPIPMTYTELLPDLLRNNLIK 410          
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3W0B4|A0A1S3W0B4_VIGRR (uncharacterized protein LOC106780001 OS=Vigna radiata var. radiata OX=3916 GN=LOC106780001 PE=4 SV=1)

HSP 1 Score: 479.945 bits (1234), Expect = 2.036e-166
Identity = 233/273 (85.35%), Postives = 244/273 (89.38%), Query Frame = 0
Query:    1 MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEAQTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGETTQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYAHDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNESESFREYAQ 273
            MENQ EVQE MK DIQQLKGQMSQILEALNALQSPGDS A RPQQR SE QTFPPYGLP NY  PS +DLGHADTQEVKDNAVEA+DKLGANTAIIHGETTQSGIA VIM+K P+MKSSP+ VT  +F+    +LEMLEK+LRVIEGKDVFEFGDARKLCLVPDVVIPPKFKL EF KYRGNTCPR+HI MYCRKM AY HDEKLLIHFFQESLTGV LSWYMRL  THICS KDLVDAFVRQYEYNKDLRPDRLQLQNMVKNE+ESFREYAQ
Sbjct:    1 MENQGEVQERMKADIQQLKGQMSQILEALNALQSPGDSCALRPQQRLSEVQTFPPYGLPQNYIPPSGKDLGHADTQEVKDNAVEAKDKLGANTAIIHGETTQSGIASVIMSKSPEMKSSPYAVTPTDFE----KLEMLEKKLRVIEGKDVFEFGDARKLCLVPDVVIPPKFKLPEFEKYRGNTCPRNHIIMYCRKMVAYTHDEKLLIHFFQESLTGVTLSWYMRLGPTHICSWKDLVDAFVRQYEYNKDLRPDRLQLQNMVKNEAESFREYAQ 269          
The following BLAST results are available for this feature:
BLAST of rna-XM_014656435.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of rna-XM_014656435.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of rna-XM_014656435.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3V0Q3|A0A1S3V0Q3_VIGRR0.000e+0100.00uncharacterized protein LOC106770634 OS=Vigna radi... [more]
tr|A0A1S3VX08|A0A1S3VX08_VIGRR0.000e+087.30uncharacterized protein LOC106779175 OS=Vigna radi... [more]
tr|A0A1S3W1U5|A0A1S3W1U5_VIGRR0.000e+083.40uncharacterized protein LOC106780739 OS=Vigna radi... [more]
tr|A0A1S3VTW8|A0A1S3VTW8_VIGRR0.000e+083.20uncharacterized protein LOC106778386 OS=Vigna radi... [more]
tr|A0A1S3TMP5|A0A1S3TMP5_VIGRR0.000e+082.17uncharacterized protein LOC106756962 OS=Vigna radi... [more]
tr|A0A1S3VMZ0|A0A1S3VMZ0_VIGRR0.000e+083.16uncharacterized protein LOC106776790 OS=Vigna radi... [more]
tr|A0A1S3T995|A0A1S3T995_VIGRR0.000e+079.51uncharacterized protein LOC106753068 OS=Vigna radi... [more]
tr|A0A1S3TSF4|A0A1S3TSF4_VIGRR0.000e+081.54uncharacterized protein LOC106758228 OS=Vigna radi... [more]
tr|A0A1S3UJW6|A0A1S3UJW6_VIGRR0.000e+084.06uncharacterized protein LOC106765987 OS=Vigna radi... [more]
tr|A0A1S3W0B4|A0A1S3W0B4_VIGRR2.036e-16685.35uncharacterized protein LOC106780001 OS=Vigna radi... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 209..300
e-value: 1.6E-10
score: 41.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..51
NoneNo IPR availablePANTHERPTHR32108DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHAcoord: 180..473

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_014656435.1_VrVC1973A-SNU_v1 ID=rna-XM_014656435.1_VrVC1973A-SNU_v1; Name=rna-XM_014656435.1; organism=Vigna radiata; type=mRNA; length=1467bp
ATGGAGAATCAAGAAGAAGTTCAAGAGGAGATGAAAGTCGATATCCAACA
ACTGAAGGGACAAATGAGCCAAATCCTAGAGGCTCTGAATGCATTACAAA
GCCCTGGAGATTCGCGGGCACCGCGACCGCAGCAAAGAGCATCGGAGGCA
CAAACTTTCCCTCCTTATGGTCTTCCTCCGAACTACACTCGACCCTCAAG
AGAGGACTTGGGACATGCTGACACCCAAGAGGTCAAAGATAACGCAGTTG
AAGCAGAAGACAAGCTTGGAGCAAACACTGCCATAATTCATGGGGAGACA
ACCCAGTCAGGTATTGCGGGTGTGATAATGACAAAACAACCCAAGATGAA
GTCTTCACCTCATGTCGTTACATCAGCAGAGTTTAAGGACAACGATAGTG
AGCTAGAAATGCTTGAGAAGAGGTTGAGAGTCATAGAGGGCAAAGATGTG
TTTGAATTTGGAGATGCTAGAAAACTATGCTTAGTTCCAGATGTGGTGAT
ACCTCCAAAGTTCAAGTTGCTAGAGTTTGGGAAATATCGGGGAAATACCT
GCCCAAGGAGCCACATAACCATGTACTGCAGAAAAATGGCAGCCTATGCT
CATGATGAAAAACTGTTGATTCACTTCTTCCAAGAAAGCTTAACTGGTGT
GGCTCTAAGTTGGTACATGCGCTTGGAAACAACTCACATTTGCTCATTGA
AAGATCTGGTTGATGCATTCGTAAGGCAGTACGAATATAATAAGGACCTA
AGACCTGACAGATTACAATTGCAAAACATGGTGAAGAACGAGTCTGAATC
GTTCAGAGAATATGCCCAAAGGTGGAGAGAAATTTATGCTCAAGTAGAAC
CTCCTCTGAGTGACAAGGAGATGACTACCATATTTCTGAATACTCTACAA
CCACCATTTTATGAGCACATGATAAGCAGTGTCTCCTCGAGTTTTGCTGA
TATAGTGGTAATTGGAGAGAGGGTTGAGGGTGGCATAAGAAATGGAAAAA
TTGCACTAGATCCAACTCTGGTGGCGAATTTGAATGAGTATGGTCTTGGA
CAGGAGGAAAATAGAAAACAAAAGGCAAATTCGCATTTTACTGCTTATCC
TCAGATGTCACATTCCTATGGTTCCAACCGAATCATTAAGCAGAGAAATC
ACAATCGGAATGAGAAGGTCGTCAATTTCACTCCTATCCCCATGACCTAT
ACGGAGCTACTGCCAGATCTTCTCCGTAATAACCTCATAGAAGTTTGTCC
CACCAGGCCTATACGACCTCCTTACCCAAAGAAGTATGACATGAATGCCA
GGTGTGATTATCATGAAGGAGTGCGCGGACATTCAACAGAGACATGCAGG
GCTCTAAAGCATAAAGTGCAATCTTTGATCGATTCAGGATGTTTAAAGTT
TGAAGAAAGTCAATCCAGCGCTGAGGCAAGGCGCGAGTTCGCCTCTGCAA
ATGCCATGGACAAATGA
back to top

protein sequence of rna-XM_014656435.1_VrVC1973A-SNU_v1

>rna-XM_014656435.1_VrVC1973A-SNU_v1 ID=rna-XM_014656435.1_VrVC1973A-SNU_v1; Name=rna-XM_014656435.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=488bp
MENQEEVQEEMKVDIQQLKGQMSQILEALNALQSPGDSRAPRPQQRASEA
QTFPPYGLPPNYTRPSREDLGHADTQEVKDNAVEAEDKLGANTAIIHGET
TQSGIAGVIMTKQPKMKSSPHVVTSAEFKDNDSELEMLEKRLRVIEGKDV
FEFGDARKLCLVPDVVIPPKFKLLEFGKYRGNTCPRSHITMYCRKMAAYA
HDEKLLIHFFQESLTGVALSWYMRLETTHICSLKDLVDAFVRQYEYNKDL
RPDRLQLQNMVKNESESFREYAQRWREIYAQVEPPLSDKEMTTIFLNTLQ
PPFYEHMISSVSSSFADIVVIGERVEGGIRNGKIALDPTLVANLNEYGLG
QEENRKQKANSHFTAYPQMSHSYGSNRIIKQRNHNRNEKVVNFTPIPMTY
TELLPDLLRNNLIEVCPTRPIRPPYPKKYDMNARCDYHEGVRGHSTETCR
ALKHKVQSLIDSGCLKFEESQSSAEARREFASANAMDK
back to top

mRNA from alignment at chr08:39412297..39413763-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_014656435.1_VrVC1973A-SNU_v1 ID=rna-XM_014656435.1_VrVC1973A-SNU_v1; Name=rna-XM_014656435.1; organism=Vigna radiata; type=mRNA; length=1467bp; location=Sequence derived from: chr08:39412297..39413763- (Vigna radiata
ATGGAGAATCAAGAAGAAGTTCAAGAGGAGATGAAAGTCGATATCCAACA ACTGAAGGGACAAATGAGCCAAATCCTAGAGGCTCTGAATGCATTACAAA GCCCTGGAGATTCGCGGGCACCGCGACCGCAGCAAAGAGCATCGGAGGCA CAAACTTTCCCTCCTTATGGTCTTCCTCCGAACTACACTCGACCCTCAAG AGAGGACTTGGGACATGCTGACACCCAAGAGGTCAAAGATAACGCAGTTG AAGCAGAAGACAAGCTTGGAGCAAACACTGCCATAATTCATGGGGAGACA ACCCAGTCAGGTATTGCGGGTGTGATAATGACAAAACAACCCAAGATGAA GTCTTCACCTCATGTCGTTACATCAGCAGAGTTTAAGGACAACGATAGTG AGCTAGAAATGCTTGAGAAGAGGTTGAGAGTCATAGAGGGCAAAGATGTG TTTGAATTTGGAGATGCTAGAAAACTATGCTTAGTTCCAGATGTGGTGAT ACCTCCAAAGTTCAAGTTGCTAGAGTTTGGGAAATATCGGGGAAATACCT GCCCAAGGAGCCACATAACCATGTACTGCAGAAAAATGGCAGCCTATGCT CATGATGAAAAACTGTTGATTCACTTCTTCCAAGAAAGCTTAACTGGTGT GGCTCTAAGTTGGTACATGCGCTTGGAAACAACTCACATTTGCTCATTGA AAGATCTGGTTGATGCATTCGTAAGGCAGTACGAATATAATAAGGACCTA AGACCTGACAGATTACAATTGCAAAACATGGTGAAGAACGAGTCTGAATC GTTCAGAGAATATGCCCAAAGGTGGAGAGAAATTTATGCTCAAGTAGAAC CTCCTCTGAGTGACAAGGAGATGACTACCATATTTCTGAATACTCTACAA CCACCATTTTATGAGCACATGATAAGCAGTGTCTCCTCGAGTTTTGCTGA TATAGTGGTAATTGGAGAGAGGGTTGAGGGTGGCATAAGAAATGGAAAAA TTGCACTAGATCCAACTCTGGTGGCGAATTTGAATGAGTATGGTCTTGGA CAGGAGGAAAATAGAAAACAAAAGGCAAATTCGCATTTTACTGCTTATCC TCAGATGTCACATTCCTATGGTTCCAACCGAATCATTAAGCAGAGAAATC ACAATCGGAATGAGAAGGTCGTCAATTTCACTCCTATCCCCATGACCTAT ACGGAGCTACTGCCAGATCTTCTCCGTAATAACCTCATAGAAGTTTGTCC CACCAGGCCTATACGACCTCCTTACCCAAAGAAGTATGACATGAATGCCA GGTGTGATTATCATGAAGGAGTGCGCGGACATTCAACAGAGACATGCAGG GCTCTAAAGCATAAAGTGCAATCTTTGATCGATTCAGGATGTTTAAAGTT TGAAGAAAGTCAATCCAGCGCTGAGGCAAGGCGCGAGTTCGCCTCTGCAA ATGCCATGGACAAATGA
back to top

Coding sequence (CDS) from alignment at chr08:39412297..39413763-

>rna-XM_014656435.1_VrVC1973A-SNU_v1 ID=rna-XM_014656435.1_VrVC1973A-SNU_v1; Name=rna-XM_014656435.1; organism=Vigna radiata; type=CDS; length=1467bp; location=Sequence derived from: chr08:39412297..39413763- (Vigna radiata
ATGGAGAATCAAGAAGAAGTTCAAGAGGAGATGAAAGTCGATATCCAACA
ACTGAAGGGACAAATGAGCCAAATCCTAGAGGCTCTGAATGCATTACAAA
GCCCTGGAGATTCGCGGGCACCGCGACCGCAGCAAAGAGCATCGGAGGCA
CAAACTTTCCCTCCTTATGGTCTTCCTCCGAACTACACTCGACCCTCAAG
AGAGGACTTGGGACATGCTGACACCCAAGAGGTCAAAGATAACGCAGTTG
AAGCAGAAGACAAGCTTGGAGCAAACACTGCCATAATTCATGGGGAGACA
ACCCAGTCAGGTATTGCGGGTGTGATAATGACAAAACAACCCAAGATGAA
GTCTTCACCTCATGTCGTTACATCAGCAGAGTTTAAGGACAACGATAGTG
AGCTAGAAATGCTTGAGAAGAGGTTGAGAGTCATAGAGGGCAAAGATGTG
TTTGAATTTGGAGATGCTAGAAAACTATGCTTAGTTCCAGATGTGGTGAT
ACCTCCAAAGTTCAAGTTGCTAGAGTTTGGGAAATATCGGGGAAATACCT
GCCCAAGGAGCCACATAACCATGTACTGCAGAAAAATGGCAGCCTATGCT
CATGATGAAAAACTGTTGATTCACTTCTTCCAAGAAAGCTTAACTGGTGT
GGCTCTAAGTTGGTACATGCGCTTGGAAACAACTCACATTTGCTCATTGA
AAGATCTGGTTGATGCATTCGTAAGGCAGTACGAATATAATAAGGACCTA
AGACCTGACAGATTACAATTGCAAAACATGGTGAAGAACGAGTCTGAATC
GTTCAGAGAATATGCCCAAAGGTGGAGAGAAATTTATGCTCAAGTAGAAC
CTCCTCTGAGTGACAAGGAGATGACTACCATATTTCTGAATACTCTACAA
CCACCATTTTATGAGCACATGATAAGCAGTGTCTCCTCGAGTTTTGCTGA
TATAGTGGTAATTGGAGAGAGGGTTGAGGGTGGCATAAGAAATGGAAAAA
TTGCACTAGATCCAACTCTGGTGGCGAATTTGAATGAGTATGGTCTTGGA
CAGGAGGAAAATAGAAAACAAAAGGCAAATTCGCATTTTACTGCTTATCC
TCAGATGTCACATTCCTATGGTTCCAACCGAATCATTAAGCAGAGAAATC
ACAATCGGAATGAGAAGGTCGTCAATTTCACTCCTATCCCCATGACCTAT
ACGGAGCTACTGCCAGATCTTCTCCGTAATAACCTCATAGAAGTTTGTCC
CACCAGGCCTATACGACCTCCTTACCCAAAGAAGTATGACATGAATGCCA
GGTGTGATTATCATGAAGGAGTGCGCGGACATTCAACAGAGACATGCAGG
GCTCTAAAGCATAAAGTGCAATCTTTGATCGATTCAGGATGTTTAAAGTT
TGAAGAAAGTCAATCCAGCGCTGAGGCAAGGCGCGAGTTCGCCTCTGCAA
ATGCCATGGACAAATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom