rna-XM_004497546.3

Transcript Overview
Namerna-XM_004497546.3
Unique Namerna-XM_004497546.3_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length279
Productphytosulfokines 2-like
References
External references for this mRNA
DatabaseAccession
GeneID101514134
GenBankXM_004497546.3
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:22160276..22161174 -Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cacanL085Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cacanL131Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascanL346Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascanL443Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ancanL0639Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0648Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0837Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL0838Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cancanL087Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanL1033Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancanL1094Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
canccR0449Cajanus cajan Asha genome v1.0Cajanus cajan
canccR0516Cajanus cajan Asha genome v1.0Cajanus cajan
canvrvR257Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canpvR265Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvrvR322Vigna radiata cv. VC1973A genome v6.0Vigna radiata
canpvR358Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
canvssR325Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvssR360Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuaR199Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR213Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR214Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canvuaR251Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuR270Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canzwsR242Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canzwsR253Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
canpsR267Pisum sativum Cameor genome v1aPisum sativum
canpsR295Pisum sativum Cameor genome v1aPisum sativum
avjcanL314Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanL407Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cancarR195Cicer arietinum
cancarR212Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014657991.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va02G020200.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg1158.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_19770Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr07.2185Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.007G223101.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_19713Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat06G0216600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun07g067100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Ca_20132Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC101514134gene-LOC101514134_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_004497546.3_CaCDCfrontier-NCBI_v1rna-XM_004497546.3_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_004497546.3_CaCDCfrontier-NCBI_v1rna-XM_004497546.3_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_004497546.3-3exon-XM_004497546.3-3_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004497546.3-2exon-XM_004497546.3-2_CaCDCfrontier-NCBI_v1Cicer arietinumexon
exon-XM_004497546.3-1exon-XM_004497546.3-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_004497603.1cds-XP_004497603.1_CaCDCfrontier-NCBI_v1_3Cicer arietinumCDS
cds-XP_004497603.1cds-XP_004497603.1_CaCDCfrontier-NCBI_v1_2Cicer arietinumCDS
cds-XP_004497603.1cds-XP_004497603.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


Homology
[Close]
BLAST of rna-XM_004497546.3 vs. Araport11
Match: | (Symbols: ATPSK3, PSK3, PSK1 | PHYTOSULFOKINE 3 PRECURSOR | chr3:16291388-16292118 REVERSE LENGTH=81)

HSP 1 Score: 64.6994 bits (156), Expect = 3.503e-15
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0 
Query:   47 SSTELKED-MQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHK 91
            S+T ++ED + +LMG E C E DEEC RRRM+ E+HLDYIYTQHHK
Sbjct:   35 SATSVEEDSVNKLMGMEYCGEGDEECLRRRMMTESHLDYIYTQHHK 80
[Close]
BLAST of rna-XM_004497546.3 vs. Araport11
Match: | (Symbols: ATPSK3, PSK3, PSK1 | PHYTOSULFOKINE 3 PRECURSOR | chr3:16291388-16292118 REVERSE LENGTH=81)

HSP 1 Score: 64.6994 bits (156), Expect = 3.503e-15
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0 
Query:   47 SSTELKED-MQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHK 91
            S+T ++ED + +LMG E C E DEEC RRRM+ E+HLDYIYTQHHK
Sbjct:   35 SATSVEEDSVNKLMGMEYCGEGDEECLRRRMMTESHLDYIYTQHHK 80
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/Swiss-Prot
Match: sp|Q8LA14|PSK6_ARATH (Putative phytosulfokines 6 OS=Arabidopsis thaliana OX=3702 GN=PSK6 PE=2 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 3.369e-14
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0 
Query:   47 SSTELKED-MQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHK 91
            S+T ++ED + +LMG E C E DEEC RRRM+ E+HLDYIYTQHHK
Sbjct:   35 SATSVEEDSVNKLMGMEYCGEGDEECLRRRMMTESHLDYIYTQHHK 80
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/Swiss-Prot
Match: sp|O81277|PSK5_ORYSJ (Phytosulfokines 5 OS=Oryza sativa subsp. japonica OX=39947 GN=PSK5 PE=1 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 2.829e-7
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0 
Query:   47 SSTELKEDMQELMGSEE------CYEKDEECFRRRMIAEAHLDYIYTQ 88
             +T   +++ ELMG+ E      C E +EEC  RRM+ +AHLDYIYTQ
Sbjct:   50 GATGNGDEVSELMGAAEEEAAGLCEEGNEECVERRMLRDAHLDYIYTQ 97
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y275|A0A1S2Y275_CICAR (Phytosulfokine OS=Cicer arietinum OX=3827 GN=LOC101514134 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 9.832e-62
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 
Query:    1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
            MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP
Sbjct:    1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A9D4W4E4|A0A9D4W4E4_PEA (Phytosulfokine (Fragment) OS=Pisum sativum OX=3888 GN=KIW84_062166 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.273e-43
Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 0 
Query:    1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
            MKHQILL F +LILSSF+AS   LVPPN SKHGEKEL V    I +SSTE+KEDM++LMGSEEC EKDEECF RRMIAEAHLDYIYTQHHKP
Sbjct:   39 MKHQILLFFFVLILSSFFASARFLVPPNASKHGEKELKV----IGKSSTEMKEDMEQLMGSEECSEKDEECFSRRMIAEAHLDYIYTQHHKP 126
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A072VKD5|A0A072VKD5_MEDTR (Phytosulfokine OS=Medicago truncatula OX=3880 GN=25483890 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.829e-38
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 0 
Query:    1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEK-ELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
            MKHQI++LF ++ILSSF ASP L+VPPNGS+HGEK EL ++ NTI QSSTE+KEDM++LMG EECYEKDEEC  RRM  E HLDYIYTQHHKP
Sbjct:    1 MKHQIIILFFVIILSSFLASPRLIVPPNGSRHGEKKELKIIGNTIAQSSTEVKEDMEQLMGLEECYEKDEECLSRRMNMETHLDYIYTQHHKP 93
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2SN50|A0A0B2SN50_GLYSO (Phytosulfokine OS=Glycine soja OX=3848 GN=glysoja_036831 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.153e-30
Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 0 
Query:    1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
            MK QI LLF +L+LSSF AS  LL P  G + GEKE+ + +N  PQSS ELK+DM+ELMGSEECY KDEEC  RRM+ EAHLDYIYTQHHKP
Sbjct:    1 MKQQIGLLFFVLLLSSFLASARLLEPLKGPRQGEKEVEINENAFPQSSHELKDDMEELMGSEECYMKDEECISRRMMVEAHLDYIYTQHHKP 92
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|Q7PCB2|Q7PCB2_SOYBN (Phytosulfokine OS=Glycine max OX=3847 GN=PSK3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.153e-30
Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 0 
Query:    1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
            MK QI LLF +L+LSSF AS  LL P  G + GEKE+ + +N  PQSS ELK+DM+ELMGSEECY KDEEC  RRM+ EAHLDYIYTQHHKP
Sbjct:    1 MKQQIGLLFFVLLLSSFLASARLLEPLKGPRQGEKEVEINENAFPQSSHELKDDMEELMGSEECYMKDEECISRRMMVEAHLDYIYTQHHKP 92
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|K7LHS9|K7LHS9_SOYBN (Phytosulfokine OS=Glycine max OX=3847 GN=GLYMA_10G066400 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.047e-28
Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 0 
Query:    1 MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
            MK QI LLF +L+LSSF AS  LL P  G + GEKE+ + +N  PQSS ELK+DM+ELMGSEECY KDEEC  RRM+ EAHLDYIYTQHHKP
Sbjct:   79 MKQQIGLLFFVLLLSSFLASARLLEPLKGPRQGEKEVEINENAFPQSSHELKDDMEELMGSEECYMKDEECISRRMMVEAHLDYIYTQHHKP 170
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A445IIT0|A0A445IIT0_GLYSO (Phytosulfokine OS=Glycine soja OX=3848 GN=D0Y65_026208 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.565e-28
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 0 
Query:   19 ASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
            AS  LL P  G + GEKE+ + +N  PQSS ELK+DM+ELMGSEECY KDEEC  RRM+ EAHLDYIYTQHHKP
Sbjct:   71 ASARLLEPLKGPRQGEKEVEINENAFPQSSHELKDDMEELMGSEECYMKDEECISRRMMVEAHLDYIYTQHHKP 144
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5N3B0|A0A6A5N3B0_LUPAL (Phytosulfokine OS=Lupinus albus OX=3870 GN=Lal_00038059 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.585e-28
Identity = 58/95 (61.05%), Postives = 71/95 (74.74%), Query Frame = 0 
Query:    1 MKHQILL-LFSLLILSSFYASPH-LLVPPNGSKHGEKELNVVDNTIPQS-STELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
            MKH+I+L  F LLILSSF AS   LLVP  G+K GEK   V  N + Q+ + +L + M+EL+ S++C EKDEECF RRMIAEAHLDYIYT+HHKP
Sbjct:    1 MKHKIVLPFFVLLILSSFLASARDLLVPSKGTKQGEKVEKVNGNILGQAYAADLTDHMEELIDSKKCNEKDEECFIRRMIAEAHLDYIYTEHHKP 95
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|V7BKX7|V7BKX7_PHAVU (Phytosulfokine OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G223100g PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.955e-26
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 0 
Query:   19 ASPHLLVPPNGSKHGEKELNVVDNTIPQSSTELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
            AS  LL PP   + GE+E+ V DN I QSS +L +DM+ELMGSEECY KDE C  RRM+ +AHLDYIYTQ+HKP
Sbjct:   95 ASARLLQPPKAPRQGEREVEVNDNAISQSSLQLNDDMEELMGSEECYVKDEACSSRRMMVDAHLDYIYTQYHKP 168
[Close]
BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1AQT4|A0A6J1AQT4_9ROSI (Phytosulfokine OS=Herrania umbratica OX=108875 GN=LOC110420543 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.952e-25
Identity = 55/90 (61.11%), Postives = 62/90 (68.89%), Query Frame = 0 
Query:    6 LLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQS---STELKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP 92
             LLF+ L L S+  S  LL      K GEKEL    N I Q+   +T++KED   LMGSEECYEKDEEC +RRMIAEAHLDYIYTQHHKP
Sbjct:   11 FLLFAFL-LCSYSTSARLL----AQKQGEKELKA--NQINQAGLLATDVKEDFSNLMGSEECYEKDEECLKRRMIAEAHLDYIYTQHHKP 93
The following BLAST results are available for this feature:
BLAST of rna-XM_004497546.3 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|3.503e-1565.22Symbols: ATPSK3, PSK3, PSK1 | PHYTOSULFOKINE 3 PRE... [more]
|3.503e-1565.22Symbols: ATPSK3, PSK3, PSK1 | PHYTOSULFOKINE 3 PRE... [more]
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BLAST of rna-XM_004497546.3 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q8LA14|PSK6_ARATH3.369e-1465.22Putative phytosulfokines 6 OS=Arabidopsis thaliana... [more]
sp|O81277|PSK5_ORYSJ2.829e-747.92Phytosulfokines 5 OS=Oryza sativa subsp. japonica ... [more]
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BLAST of rna-XM_004497546.3 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2Y275|A0A1S2Y275_CICAR9.832e-62100.00Phytosulfokine OS=Cicer arietinum OX=3827 GN=LOC10... [more]
tr|A0A9D4W4E4|A0A9D4W4E4_PEA1.273e-4378.26Phytosulfokine (Fragment) OS=Pisum sativum OX=3888... [more]
tr|A0A072VKD5|A0A072VKD5_MEDTR4.829e-3874.19Phytosulfokine OS=Medicago truncatula OX=3880 GN=2... [more]
tr|A0A0B2SN50|A0A0B2SN50_GLYSO9.153e-3068.48Phytosulfokine OS=Glycine soja OX=3848 GN=glysoja_... [more]
tr|Q7PCB2|Q7PCB2_SOYBN9.153e-3068.48Phytosulfokine OS=Glycine max OX=3847 GN=PSK3 PE=2... [more]
tr|K7LHS9|K7LHS9_SOYBN1.047e-2868.48Phytosulfokine OS=Glycine max OX=3847 GN=GLYMA_10G... [more]
tr|A0A445IIT0|A0A445IIT0_GLYSO2.565e-2868.92Phytosulfokine OS=Glycine soja OX=3848 GN=D0Y65_02... [more]
tr|A0A6A5N3B0|A0A6A5N3B0_LUPAL2.585e-2861.05Phytosulfokine OS=Lupinus albus OX=3870 GN=Lal_000... [more]
tr|V7BKX7|V7BKX7_PHAVU5.955e-2663.51Phytosulfokine OS=Phaseolus vulgaris OX=3885 GN=PH... [more]
tr|A0A6J1AQT4|A0A6J1AQT4_9ROSI2.952e-2561.11Phytosulfokine OS=Herrania umbratica OX=108875 GN=... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009438PhytosulfokinePFAMPF06404PSKcoord: 12..92
e-value: 1.9E-17
score: 75.4
IPR009438PhytosulfokinePANTHERPTHR33285PHYTOSULFOKINES 3coord: 4..92

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_004497546.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497546.3; organism=Cicer arietinum; type=mRNA; length=279bp
ATGAAGCATCAAATTCTCTTGCTTTTCTCTCTTCTCATTCTTTCCTCTTT
CTATGCTTCTCCTCATCTCCTTGTACCACCAAATGGTTCAAAACATGGTG
AAAAGGAATTGAACGTCGTTGATAACACTATTCCTCAATCATCCACCGAA
TTGAAAGAAGATATGCAAGAACTAATGGGATCAGAGGAGTGTTATGAAAA
GGATGAAGAATGCTTTAGAAGAAGGATGATTGCGGAGGCCCACTTGGATT
ATATCTACACCCAACACCATAAGCCTTGA
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protein sequence of rna-XM_004497546.3_CaCDCfrontier-NCBI_v1

>rna-XM_004497546.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=92bp
MKHQILLLFSLLILSSFYASPHLLVPPNGSKHGEKELNVVDNTIPQSSTE
LKEDMQELMGSEECYEKDEECFRRRMIAEAHLDYIYTQHHKP
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mRNA from alignment at chr4:22160276..22161174-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_004497546.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497546.3; organism=Cicer arietinum; type=mRNA; length=899bp; location=Sequence derived from: chr4:22160276..22161174- (Cicer arietinum
AAGGTTCTCCTAAGTTCCTAAGTTGTGTACTATTTGGAGTCTCCACGTGA
CTCAAACACCCCTTTAAGCAGCTTTATGCAAAGTTTCATTTATTTATTTA
TTTATTCCCTTCTTCCACATTCTTACTTAAATTTATTTTACTTTGATTCC
TCTCTAACTATCTCCAATGAAGCATCAAATTCTCTTGCTTTTCTCTCTTC
TCATTCTTTCCTCTTTCTATGCTTCTCCTCATCTCCTTGTACCACCAAAT
GGTTCAAAACATGGTAATTAACTTCTACTACATTATTTTTTTAATTTTTA
ATTTTTAATTTTTATGTCTTTGTGTTGTTGTAACTAATTTTTTTTATAAA
ATATATAGGTGAAAAGGAATTGAACGTCGTTGATAACACTATTCCTCAAT
CATCCACCGAATTGAAAGAAGATATGCAAGAAGTAAGAATGTACATAATG
TTTTTACATATTGCTTTAAGAGCCAAATTGAAATTTTATCTTGATTAGCT
TTTAGTTTATTTGTTTTATTTTTATTTCCATTTTTTTTCTCTTATAATTT
GATTTAATTTTGTATAGCTAATGGGATCAGAGGAGTGTTATGAAAAGGAT
GAAGAATGCTTTAGAAGAAGGATGATTGCGGAGGCCCACTTGGATTATAT
CTACACCCAACACCATAAGCCTTGAATGCACTTTAGTTTAAATGCAGTGC
ATTAATTGAGCATGAGTTGCTAAATGTAATAAAGTACTAAATAAATACGA
AATATAAATATAAGGTGTATCTCTGTTTTGAGGTTCAAGTTGCGACGGTT
GTTAAATATATGTAAATGGCCATTCTCCATAACAGAGACACTTCCTTCGA
TTTTAAATATAAAAATAATGTCTAAAAAAATTTATGTATTTAGTTCAAA
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Coding sequence (CDS) from alignment at chr4:22160276..22161174-

>rna-XM_004497546.3_CaCDCfrontier-NCBI_v1 ID=rna-XM_004497546.3_CaCDCfrontier-NCBI_v1; Name=rna-XM_004497546.3; organism=Cicer arietinum; type=CDS; length=279bp; location=Sequence derived from: chr4:22160276..22161174- (Cicer arietinum
ATGAAGCATCAAATTCTCTTGCTTTTCTCTCTTCTCATTCTTTCCTCTTT
CTATGCTTCTCCTCATCTCCTTGTACCACCAAATGGTTCAAAACATGGTG
AAAAGGAATTGAACGTCGTTGATAACACTATTCCTCAATCATCCACCGAA
TTGAAAGAAGATATGCAAGAACTAATGGGATCAGAGGAGTGTTATGAAAA
GGATGAAGAATGCTTTAGAAGAAGGATGATTGCGGAGGCCCACTTGGATT
ATATCTACACCCAACACCATAAGCCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009438Phytosulfokine
Vocabulary: Biological Process
TermDefinition
GO:0008283cell population proliferation
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region