Cc_v2.0_19489.1

Transcript Overview
NameCc_v2.0_19489.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_19489.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length399
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG08_v2.0chromosomeCcLG08_v2.0:53643094..53643764 +Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anccaL0050Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL137Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0222Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL291Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0413Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0575Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0849Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carccaL066Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR677Pisum sativum Cameor genome v1aPisum sativum
ccapsR686Pisum sativum Cameor genome v1aPisum sativum
ccapsR713Pisum sativum Cameor genome v1aPisum sativum
carccaL616Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavrvR613Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavrvR656Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR659Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR733Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccapvR748Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR695Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccavfhR712Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR782Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavssR722Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccccaL0080Cajanus cajan Asha genome v1.0Cajanus cajan
ccavssR778Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccccaL0659Cajanus cajan Asha genome v1.0Cajanus cajan
ccavumR698Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR566Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavuR568Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavuR593Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavuR594Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR753Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavumR759Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavumR760Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavunR487Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR489Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR515Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR516Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR760Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR777Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR799Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR801Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigun06g159000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vum_05G00703.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Hedin2.R1.1g449600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun03g444200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_014662790.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr06.1837Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
evm.Ca_v2.0_00682Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vigun03g444200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg39056.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Va09G055170.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
PvulFLAVERTChr03.1000494Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.006G147200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.003G081100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun06g159000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-TanjilR_13185Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat1g178680.1Pisum sativum Cameor genome v1aPisum sativum
Vum_01G04151.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_004562Cajanus cajan Asha genome v1.0Cajanus cajan
rna-KK1_017286Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_19489drCajCajn.Asha.2.0.Cc_v2.0_19489Cajanus cajangene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_19489.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_19489.1.exon1Cajanus cajanexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_19489.1.utr5p1drCajCajn.Asha.2.0.Cc_v2.0_19489.1.utr5p1Cajanus cajanfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_19489.1drCajCajn.Asha.2.0.cds.Cc_v2.0_19489.1Cajanus cajanCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_19489.1.utr3p1drCajCajn.Asha.2.0.Cc_v2.0_19489.1.utr3p1Cajanus cajanthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_19489.1drCajCajn.Asha.2.0.Cc_v2.0_19489.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_19489.1drCajCajn.Asha.2.0.Cc_v2.0_19489.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151T6Q3|A0A151T6Q3_CAJCA (Stigma-specific STIG1-like protein 1 OS=Cajanus cajan OX=3821 GN=KK1_017286 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 6.785e-83
Identity = 125/132 (94.70%), Postives = 128/132 (96.97%), Query Frame = 0 
Query:    2 MKSFKTLFLVAMLMALATTLSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCC-TKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            MKSF T FL+AMLMALA TLSAT+SETEEPKS+RGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCC TKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA
Sbjct:    1 MKSFTTFFLLAMLMALAITLSATTSETEEPKSLRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151T6R1|A0A151T6R1_CAJCA (Stigma-specific STIG1-like protein 1 OS=Cajanus cajan OX=3821 GN=KK1_017287 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 2.409e-78
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 
Query:   15 MALATTLSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            MALATTLSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA
Sbjct:    1 MALATTLSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 118
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GS19|A0A445GS19_GLYSO (Stigma-specific STIG1-like protein 1 OS=Glycine soja OX=3848 GN=D0Y65_040575 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.318e-76
Identity = 118/132 (89.39%), Postives = 125/132 (94.70%), Query Frame = 0 
Query:    2 MKSFKTLFLVAML-MALATTLSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            MKS KTLFLVA+L MALA TLSATSS+TEEPKS+RG SRFLSQ  RVALTCDKNPKICL+KGSAGP+CC+ KCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCV+GMCSYA
Sbjct:    1 MKSLKTLFLVALLIMALAITLSATSSQTEEPKSLRGTSRFLSQK-RVALTCDKNPKICLVKGSAGPNCCSNKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVFGMCSYA 131
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|C6T234|C6T234_SOYBN (Stigma-specific STIG1-like protein 1 OS=Glycine max OX=3847 GN=100500553 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.318e-76
Identity = 118/132 (89.39%), Postives = 125/132 (94.70%), Query Frame = 0 
Query:    2 MKSFKTLFLVAML-MALATTLSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            MKS KTLFLVA+L MALA TLSATSS+TEEPKS+RG SRFLSQ  RVALTCDKNPKICL+KGSAGP+CC+ KCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCV+GMCSYA
Sbjct:    1 MKSLKTLFLVALLIMALAITLSATSSQTEEPKSLRGTSRFLSQK-RVALTCDKNPKICLVKGSAGPNCCSNKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVFGMCSYA 131
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445IV04|A0A445IV04_GLYSO (Stigma-specific STIG1-like protein 1 OS=Glycine soja OX=3848 GN=D0Y65_022797 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.691e-74
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0 
Query:    2 MKSFKTLFLVAMLMALATT-LSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            MKS KTLFLVA+LMALA T LSATS ETEEPKS+RG SRFLS+  RVALTCDKNPKICLIKGSAGP+CC+ KCVNFSTDRLNCGRCGKKCSFGKICC+GKCVNPKTNEKHCGKCGNKCNAKGSCV GMCSYA
Sbjct:    1 MKSLKTLFLVALLMALAITQLSATSLETEEPKSLRGTSRFLSKK-RVALTCDKNPKICLIKGSAGPNCCSNKCVNFSTDRLNCGRCGKKCSFGKICCQGKCVNPKTNEKHCGKCGNKCNAKGSCVLGMCSYA 131
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1KZV1|I1KZV1_SOYBN (Stigma-specific STIG1-like protein 1 OS=Glycine max OX=3847 GN=100800556 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.691e-74
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0 
Query:    2 MKSFKTLFLVAMLMALATT-LSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            MKS KTLFLVA+LMALA T LSATS ETEEPKS+RG SRFLS+  RVALTCDKNPKICLIKGSAGP+CC+ KCVNFSTDRLNCGRCGKKCSFGKICC+GKCVNPKTNEKHCGKCGNKCNAKGSCV GMCSYA
Sbjct:    1 MKSLKTLFLVALLMALAITQLSATSLETEEPKSLRGTSRFLSKK-RVALTCDKNPKICLIKGSAGPNCCSNKCVNFSTDRLNCGRCGKKCSFGKICCQGKCVNPKTNEKHCGKCGNKCNAKGSCVLGMCSYA 131
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86SNA9|A0AA86SNA9_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS19304 PE=4 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.303e-73
Identity = 115/133 (86.47%), Postives = 121/133 (90.98%), Query Frame = 0 
Query:    2 MKSFKTLFLVAMLMALATT-LSATSSE-TEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            MK  KTLFLVA+LMALA T LSATSS+  EEPKS+RG SRFLSQ+GRVALTC+KNPKICL+KGSAGPDCC  KCV FSTDRLNCGRCGKKCSFGKICCEGKCVNP TNEKHCGKCGNKCNAKGSCV GMCSYA
Sbjct:    1 MKLLKTLFLVALLMALAITDLSATSSDFDEEPKSLRGTSRFLSQSGRVALTCEKNPKICLVKGSAGPDCCNNKCVKFSTDRLNCGRCGKKCSFGKICCEGKCVNPNTNEKHCGKCGNKCNAKGSCVLGMCSYA 133
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6KTN4|A0A4D6KTN4_VIGUN (Stigma-specific protein Stig1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g786 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.130e-70
Identity = 105/131 (80.15%), Postives = 114/131 (87.02%), Query Frame = 0 
Query:    2 MKSFKTLFLVAMLMALATTLSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            MK  KTLFLV  +MALA T++ +S   EE KS+RG SRFLSQNGRVALTC+KNPKICL+KGSAGPDCC  KCV F TDR NCGRCGKKCSFGKICCEGKCVNP TN+KHCGKCGNKCNAKGSCV+GMCSYA
Sbjct:    1 MKLLKTLFLVLFIMALAITVATSSEWNEETKSLRGTSRFLSQNGRVALTCEKNPKICLVKGSAGPDCCNNKCVKFLTDRQNCGRCGKKCSFGKICCEGKCVNPNTNKKHCGKCGNKCNAKGSCVFGMCSYA 131
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BP07|V7BP07_PHAVU (Stigma-specific STIG1-like protein 1 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G147200g PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 4.981e-69
Identity = 112/132 (84.85%), Postives = 119/132 (90.15%), Query Frame = 0 
Query:    2 MKSFKTLFLVAMLMALA-TTLSATSSET-EEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSY 131
            MK  KTLFLVA+LMALA T LSATS+++ EEPKS+RG SRFLSQ  RVALTC+KNPKICL KGSAGPDCC KKCV FSTDRLNCGRCGKKCSFGKICCEGKCVNP TNEKHCGKCG KCNAKGSCV+GMCSY
Sbjct:    1 MKLLKTLFLVALLMALAITALSATSADSNEEPKSLRGTSRFLSQ--RVALTCEKNPKICLAKGSAGPDCCNKKCVKFSTDRLNCGRCGKKCSFGKICCEGKCVNPNTNEKHCGKCGIKCNAKGSCVFGMCSY 130
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8K7E2|A0A8B8K7E2_ABRPR (Stigma-specific STIG1-like protein 1 OS=Abrus precatorius OX=3816 GN=LOC113853314 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.984e-68
Identity = 105/132 (79.55%), Postives = 114/132 (86.36%), Query Frame = 0 
Query:    2 MKSFKTLFLVAMLMALATTLSATSSETEEPKSVRGRSRFLSQN-GRVALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            MKS  TLF++A+LMALA TLSATSSE EEP  +RG SRFLSQ  GRVAL CDK P IC IKGSAGP+CC  KCVNF TD  NCGRCGKKCSFGK+CC+GKCVNP+TNEKHCGKCGNKCNAKGSCVYG+CSYA
Sbjct:    1 MKSLNTLFILALLMALAITLSATSSENEEPNFLRGTSRFLSQKKGRVALACDKYPNICHIKGSAGPNCCNNKCVNFFTDSFNCGRCGKKCSFGKMCCDGKCVNPRTNEKHCGKCGNKCNAKGSCVYGICSYA 132
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SZ28|STGL1_ARATH (Stigma-specific STIG1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At4g26880 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.884e-22
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 0 
Query:   19 TTLSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPD----CCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            T+  A S+ T  P  +  +     +N   A  C++NP+IC   G  G +    CC  KC++ S+D  NCG C  KC F + CC G+CV    +++HCG+C + C     CVYG+C+YA
Sbjct:   35 TSFDAPSTPTIRPNRLLAQKEVGERNPNAADHCNRNPEICTPYGGGGSNSTMTCCNNKCIDVSSDDNNCGACKNKCKFSQTCCRGQCVYVAYDKRHCGQCNHPCELGEFCVYGLCNYA 152
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9C6T5|STGL3_ARATH (Stigma-specific STIG1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At1g50720 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.320e-20
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 0 
Query:   11 VAMLMALAT---------TLSATSSETEEPKSVRGRSRFLSQNGR------VALTCDKNPKICLIKG--SAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            +A+++ +AT         TL  T ++T+   +    SRFL+QN +       A  C+K  +IC  +G  ++   CC+ KCV+ + D  NCG C  +C F + CC G+CV    +++HCG+C + C     CVYG+C+YA
Sbjct:   16 IAIMVLIATVFVSNNKTETLLQTHTQTQTLITTGRVSRFLAQNAKNGRNLNAADHCNKEEEICKSQGMYNSTMACCSNKCVDLAYDNDNCGACKNQCKFTQTCCRGECVYLAYDKRHCGECNHSCLVGEFCVYGLCNYA 154
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FLQ0|STGL2_ARATH (Stigma-specific STIG1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g55110 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.064e-18
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 0 
Query:   21 LSATSSETEEPKSVRGR-SRFLSQ-----------NGRVALTCDKNPKICL-----IKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            L     +   P +++ R SRFL++           N   A  C+K+ +IC         +A   CC  KC++ STD  NCG C  KC FG+ CC G+CV    +++HCG+C ++C+    CVYG+C+YA
Sbjct:   35 LEDPFKDLTPPGTIKIRPSRFLAEKVDKGKEPKARNPNAADHCNKDNEICSSSDYSTGANATMACCNNKCMDLSTDDKNCGLCKNKCKFGQTCCRGQCVYVAYDKRHCGECNHRCDLGEFCVYGLCNYA 163
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LNN7|GRI_ARATH (Protein GRIM REAPER OS=Arabidopsis thaliana OX=3702 GN=GRI PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.591e-15
Identity = 37/72 (51.39%), Postives = 41/72 (56.94%), Query Frame = 0 
Query:   61 KGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            KG++   CC K C N   DR NCGRCG KC FG+ CC G C     N  HCGKC  KC +   C YG C YA
Sbjct:   97 KGTSLLHCCKKHCRNVLGDRNNCGRCGHKCGFGQRCCGGVCTYVNFNPNHCGKCTRKCASGVKCEYGYCGYA 168
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9C6P6|STGL4_ARATH (Stigma-specific STIG1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=KRS PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.033e-12
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 0 
Query:   55 PKICLIKG--SAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            P IC   G   A   CC  +CV+  +D  +C  C K C F   CC+G CV+  T+  +CG+CGN+C +   C +GMC YA
Sbjct:   59 PWICKRSGPSEARMRCCRNQCVDVLSDPNHCRFCFKSCRFALSCCDGDCVDTNTDPSNCGQCGNECESGAPCEFGMCGYA 138
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q40579|STIG1_TOBAC (Protein STIG1 OS=Nicotiana tabacum OX=4097 GN=STIG1 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 6.430e-11
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0 
Query:   68 CCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            C    CV+ ST+R NCG CG  C+ G  CC G CV+ + +  +CGKC N C+    C +G C YA
Sbjct:   82 CFNYSCVDVSTNRFNCGSCGLVCNLGTRCCGGICVDIQKDNGNCGKCSNVCSPGQKCSFGFCDYA 146
[Close]
BLAST of Cc_v2.0_19489.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6EEH1|STIG1_SOLLC (Protein STIG1 OS=Solanum lycopersicum OX=4081 GN=STIG1 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 4.902e-9
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 0 
Query:   73 CVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            CV+  T+R NCG CG  C  G  CC G CV+ K +  +CGKC N C+   +C +G+C  A
Sbjct:   84 CVDLFTNRFNCGSCGLVCIVGTRCCGGICVDIKKDNGNCGKCNNVCSPGQNCSFGLCVSA 143
[Close]
BLAST of Cc_v2.0_19489.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:4026195-4026617 REVERSE LENGTH=140)

HSP 1 Score: 118.627 bits (296), Expect = 4.193e-35
Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = 0 
Query:    2 MKSFK-TLFLVAMLMALATTLSATSSETEEPKSVRGRSRFLSQNGR--------VALTCDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            M +FK + F++ ++M LA  ++ +   T E K        ++ + R          LTCDK+ K+C +KGS G +CC KKCV+  T++LNCGRCGK C + ++CC G CVNP  + +HCG C  KC    SC YGMCSYA
Sbjct:    1 MNTFKISYFIMVLIMVLAIAITFSEPLTVEAKHQHKYGWGIAASARNKGRKHLGATLTCDKSSKVCRLKGSPGRNCCRKKCVDLRTNKLNCGRCGKSCQYSEVCCNGYCVNPMFDRRHCGGCFKKCKKGRSCAYGMCSYA 140
[Close]
BLAST of Cc_v2.0_19489.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:13508265-13508723 REVERSE LENGTH=152)

HSP 1 Score: 88.5817 bits (218), Expect = 4.026e-23
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 0 
Query:   19 TTLSATSSETEEPKSVRGRSRFLSQNGRVALTCDKNPKICLIKGSAGPD----CCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            T+  A S+ T  P  +  +     +N   A  C++NP+IC   G  G +    CC  KC++ S+D  NCG C  KC F + CC G+CV    +++HCG+C + C     CVYG+C+YA
Sbjct:   35 TSFDAPSTPTIRPNRLLAQKEVGERNPNAADHCNRNPEICTPYGGGGSNSTMTCCNNKCIDVSSDDNNCGACKNKCKFSQTCCRGQCVYVAYDKRHCGQCNHPCELGEFCVYGLCNYA 152
[Close]
BLAST of Cc_v2.0_19489.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:18789180-18789644 REVERSE LENGTH=154)

HSP 1 Score: 84.7297 bits (208), Expect = 1.367e-21
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 0 
Query:   11 VAMLMALAT---------TLSATSSETEEPKSVRGRSRFLSQNGR------VALTCDKNPKICLIKG--SAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            +A+++ +AT         TL  T ++T+   +    SRFL+QN +       A  C+K  +IC  +G  ++   CC+ KCV+ + D  NCG C  +C F + CC G+CV    +++HCG+C + C     CVYG+C+YA
Sbjct:   16 IAIMVLIATVFVSNNKTETLLQTHTQTQTLITTGRVSRFLAQNAKNGRNLNAADHCNKEEEICKSQGMYNSTMACCSNKCVDLAYDNDNCGACKNQCKFTQTCCRGECVYLAYDKRHCGECNHSCLVGEFCVYGLCNYA 154
[Close]
BLAST of Cc_v2.0_19489.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:22367870-22368361 FORWARD LENGTH=163)

HSP 1 Score: 78.5666 bits (192), Expect = 4.201e-19
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 0 
Query:   21 LSATSSETEEPKSVRGR-SRFLSQ-----------NGRVALTCDKNPKICL-----IKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            L     +   P +++ R SRFL++           N   A  C+K+ +IC         +A   CC  KC++ STD  NCG C  KC FG+ CC G+CV    +++HCG+C ++C+    CVYG+C+YA
Sbjct:   35 LEDPFKDLTPPGTIKIRPSRFLAEKVDKGKEPKARNPNAADHCNKDNEICSSSDYSTGANATMACCNNKCMDLSTDDKNCGLCKNKCKFGQTCCRGQCVYVAYDKRHCGECNHRCDLGEFCVYGLCNYA 163
[Close]
BLAST of Cc_v2.0_19489.1 vs. Araport11
Match: | (Symbols: GRI | GRIM REAPER | chr1:19794947-19795453 REVERSE LENGTH=168)

HSP 1 Score: 71.2478 bits (173), Expect = 2.673e-16
Identity = 37/72 (51.39%), Postives = 41/72 (56.94%), Query Frame = 0 
Query:   61 KGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            KG++   CC K C N   DR NCGRCG KC FG+ CC G C     N  HCGKC  KC +   C YG C YA
Sbjct:   97 KGTSLLHCCKKHCRNVLGDRNNCGRCGHKCGFGQRCCGGVCTYVNFNPNHCGKCTRKCASGVKCEYGYCGYA 168
[Close]
BLAST of Cc_v2.0_19489.1 vs. Araport11
Match: | (Symbols: KRS | KERBEROS | chr1:18763773-18764297 REVERSE LENGTH=174)

HSP 1 Score: 63.5438 bits (153), Expect = 3.120e-13
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 0 
Query:   55 PKICLIKG--SAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGKCVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA 132
            P IC   G   A   CC  +CV+  +D  +C  C K C F   CC+G CV+  T+  +CG+CGN+C +   C +GMC YA
Sbjct:   59 PWICKRSGPSEARMRCCRNQCVDVLSDPNHCRFCFKSCRFALSCCDGDCVDTNTDPSNCGQCGNECESGAPCEFGMCGYA 138
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_19489.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A151T6Q3|A0A151T6Q3_CAJCA6.785e-8394.70Stigma-specific STIG1-like protein 1 OS=Cajanus ca... [more]
tr|A0A151T6R1|A0A151T6R1_CAJCA2.409e-78100.00Stigma-specific STIG1-like protein 1 OS=Cajanus ca... [more]
tr|A0A445GS19|A0A445GS19_GLYSO2.318e-7689.39Stigma-specific STIG1-like protein 1 OS=Glycine so... [more]
tr|C6T234|C6T234_SOYBN2.318e-7689.39Stigma-specific STIG1-like protein 1 OS=Glycine ma... [more]
tr|A0A445IV04|A0A445IV04_GLYSO1.691e-7488.64Stigma-specific STIG1-like protein 1 OS=Glycine so... [more]
tr|I1KZV1|I1KZV1_SOYBN1.691e-7488.64Stigma-specific STIG1-like protein 1 OS=Glycine ma... [more]
tr|A0AA86SNA9|A0AA86SNA9_9FABA4.303e-7386.47Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A4D6KTN4|A0A4D6KTN4_VIGUN6.130e-7080.15Stigma-specific protein Stig1 OS=Vigna unguiculata... [more]
tr|V7BP07|V7BP07_PHAVU4.981e-6984.85Stigma-specific STIG1-like protein 1 OS=Phaseolus ... [more]
tr|A0A8B8K7E2|A0A8B8K7E2_ABRPR1.984e-6879.55Stigma-specific STIG1-like protein 1 OS=Abrus prec... [more]
back to top
BLAST of Cc_v2.0_19489.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 7
Match NameE-valueIdentityDescription
sp|Q9SZ28|STGL1_ARATH3.884e-2237.29Stigma-specific STIG1-like protein 1 OS=Arabidopsi... [more]
sp|Q9C6T5|STGL3_ARATH1.320e-2034.53Stigma-specific STIG1-like protein 3 OS=Arabidopsi... [more]
sp|Q9FLQ0|STGL2_ARATH4.064e-1835.66Stigma-specific STIG1-like protein 2 OS=Arabidopsi... [more]
sp|Q9LNN7|GRI_ARATH2.591e-1551.39Protein GRIM REAPER OS=Arabidopsis thaliana OX=370... [more]
sp|Q9C6P6|STGL4_ARATH3.033e-1241.25Stigma-specific STIG1-like protein 4 OS=Arabidopsi... [more]
sp|Q40579|STIG1_TOBAC6.430e-1144.62Protein STIG1 OS=Nicotiana tabacum OX=4097 GN=STIG... [more]
sp|Q6EEH1|STIG1_SOLLC4.902e-945.00Protein STIG1 OS=Solanum lycopersicum OX=4081 GN=S... [more]
back to top
BLAST of Cc_v2.0_19489.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 6
Match NameE-valueIdentityDescription
|4.193e-3542.86Symbols: no symbol available | no full name availa... [more]
|4.026e-2337.29Symbols: no symbol available | no full name availa... [more]
|1.367e-2134.53Symbols: no symbol available | no full name availa... [more]
|4.201e-1935.66Symbols: no symbol available | no full name availa... [more]
|2.673e-1651.39Symbols: GRI | GRIM REAPER | chr1:19794947-1979545... [more]
|3.120e-1341.25Symbols: KRS | KERBEROS | chr1:18763773-18764297 R... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006969Stigma-specific protein Stig1PFAMPF04885Stig1coord: 25..132
e-value: 1.1E-33
score: 128.2
IPR006969Stigma-specific protein Stig1PANTHERPTHR33227STIGMA-SPECIFIC STIG1-LIKE PROTEIN 3coord: 14..132

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_19489.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19489.1; Name=Cc_v2.0_19489.1; organism=Cajanus cajan; type=mRNA; length=399bp
ATGATGAAGTCCTTCAAGACCCTCTTCCTTGTGGCCATGTTAATGGCTTT
GGCCACTACTCTGTCAGCAACATCTTCAGAAACTGAAGAACCAAAGTCTG
TCCGAGGAAGAAGCCGGTTCCTTTCGCAGAATGGAAGGGTGGCGTTGACA
TGTGACAAGAACCCTAAGATTTGCCTTATTAAAGGCAGCGCAGGCCCTGA
TTGCTGCACCAAAAAATGTGTCAACTTTTCCACAGACAGACTTAACTGCG
GGAGGTGTGGAAAGAAATGCAGCTTCGGAAAGATATGCTGCGAAGGCAAG
TGTGTGAACCCTAAGACTAATGAGAAACATTGTGGGAAATGTGGAAATAA
GTGCAACGCCAAAGGTTCATGTGTTTATGGGATGTGCAGCTATGCATAG
back to top

protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_19489.1

>drCajCajn.Asha.2.0.Cc_v2.0_19489.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19489.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_19489.1; organism=Cajanus cajan; type=polypeptide; length=132bp
MMKSFKTLFLVAMLMALATTLSATSSETEEPKSVRGRSRFLSQNGRVALT
CDKNPKICLIKGSAGPDCCTKKCVNFSTDRLNCGRCGKKCSFGKICCEGK
CVNPKTNEKHCGKCGNKCNAKGSCVYGMCSYA
back to top

mRNA from alignment at CcLG08_v2.0:53643094..53643764+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_19489.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19489.1; Name=Cc_v2.0_19489.1; organism=Cajanus cajan; type=mRNA; length=671bp; location=Sequence derived from: CcLG08_v2.0:53643094..53643764+ (Cajanus cajan
ACCCCATTACTTCATCAAATCTTCTTCTATCTCCTTATAACACAAACACA
CCAAAATATAATGATGAAGTCCTTCAAGACCCTCTTCCTTGTGGCCATGT
TAATGGCTTTGGCCACTACTCTGTCAGCAACATCTTCAGAAACTGAAGAA
CCAAAGTCTGTCCGAGGAAGAAGCCGGTTCCTTTCGCAGAATGGAAGGGT
GGCGTTGACATGTGACAAGAACCCTAAGATTTGCCTTATTAAAGGCAGCG
CAGGCCCTGATTGCTGCACCAAAAAATGTGTCAACTTTTCCACAGACAGA
CTTAACTGCGGGAGGTGTGGAAAGAAATGCAGCTTCGGAAAGATATGCTG
CGAAGGCAAGTGTGTGAACCCTAAGACTAATGAGAAACATTGTGGGAAAT
GTGGAAATAAGTGCAACGCCAAAGGTTCATGTGTTTATGGGATGTGCAGC
TATGCATAGAATTTGAAACAGATTGACGAGCATTCTTTCGACCAATTAAG
ATTGATCATTTTGATTTGTGATCCACAAAGCAGCCATCAGCACTTGAGGA
GTGCTGCTAGTTATATTAAAATTTGTTCTTAATCTGCATTATTGGTTTGT
ACGAATAATATATTTCTTAATTGTTAATTACCTGATTGATTCTTGTAATT
GGTTTTTATTTTTTATATATG
back to top

Coding sequence (CDS) from alignment at CcLG08_v2.0:53643094..53643764+

>drCajCajn.Asha.2.0.Cc_v2.0_19489.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_19489.1; Name=Cc_v2.0_19489.1; organism=Cajanus cajan; type=CDS; length=399bp; location=Sequence derived from: CcLG08_v2.0:53643094..53643764+ (Cajanus cajan
ATGATGAAGTCCTTCAAGACCCTCTTCCTTGTGGCCATGTTAATGGCTTT
GGCCACTACTCTGTCAGCAACATCTTCAGAAACTGAAGAACCAAAGTCTG
TCCGAGGAAGAAGCCGGTTCCTTTCGCAGAATGGAAGGGTGGCGTTGACA
TGTGACAAGAACCCTAAGATTTGCCTTATTAAAGGCAGCGCAGGCCCTGA
TTGCTGCACCAAAAAATGTGTCAACTTTTCCACAGACAGACTTAACTGCG
GGAGGTGTGGAAAGAAATGCAGCTTCGGAAAGATATGCTGCGAAGGCAAG
TGTGTGAACCCTAAGACTAATGAGAAACATTGTGGGAAATGTGGAAATAA
GTGCAACGCCAAAGGTTCATGTGTTTATGGGATGTGCAGCTATGCATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006969Stig1