Ca_01115, Ca_01115_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_01115 vs. SwissProt
Match: GAT16_ARATH (GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.349e-15 Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLNSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP GPK+LCNACGIR RK+R + GGN LK L+ LG + S ++KQR KLGEEEQAAV LMA+S G V+A Sbjct: 47 PLWRGGPVGPKSLCNACGIRNRKKR-----RGGTEDNKKLKKSSSGGGNRKFGESLKQSLMDLG--IRKRSTVEKQRQ-KLGEEEQAAVLLMALSYGSVYA 139
BLAST of Ca_01115 vs. SwissProt
Match: GAT15_ARATH (GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 5.232e-15 Identity = 47/96 (48.96%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLL-NSVMKKQRMIKLGEEEQAAVCLMAIS 381 PLWRGGP GPK+LCNACGIR RK+R N G+ LK +L+ LG EV++ S + QR KLGEEEQAAV LMA+S Sbjct: 52 PLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKFGDS-----LKQRLMELGREVMMQRSTAENQRRNKLGEEEQAAVLLMALS 142
BLAST of Ca_01115 vs. SwissProt
Match: GAT17_ARATH (GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.575e-11 Identity = 50/138 (36.23%), Postives = 65/138 (47.10%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRR-----------------GCCNXXXXXXXXXXXXXXNGVGG-----NDDLRVCLKM------------KLVALGEEVLL---NSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP GPK+LCNACGI+ RK+R C N N V +DD ++C K + LG +V + ++V KK+ KLGEEE+AAV LMA+SC V+A Sbjct: 53 PLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVPVMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190
BLAST of Ca_01115 vs. SwissProt
Match: GAT23_ARATH (GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 1.334e-10 Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLNS-----VMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 P+WRGGP GPK+LCNACGIR+RK+R +G + + K +A + LL+S +KK+R +K EEEQAA+CL+ +SC V A Sbjct: 37 PMWRGGPTGPKSLCNACGIRHRKQR----------------RSELLG----IHIIRSHKSLASKKINLLSSSHGGVAVKKRRSLK--EEEQAALCLLLLSCSSVLA 120
BLAST of Ca_01115 vs. TrEMBL
Match: G7KWI0_MEDTR (GATA transcription factor OS=Medicago truncatula GN=MTR_7g112330 PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 5.068e-42 Identity = 91/133 (68.42%), Postives = 93/133 (69.92%), Query Frame = 1 Query: 1 MGIMDQMDKECCSYKEMSVIXXXXXXXXXXXXPLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLNSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 MGIMDQMDKECCSY EM VI PLWRGGPNGPKTLCNACGIRYRKRRGCC+ NDDL CLKMKLVALGEE LL KKQRMIKLGEEEQAAVCLMA+SCGFVFA Sbjct: 1 MGIMDQMDKECCSYDEMGVIKKFCADCKTTKTPLWRGGPNGPKTLCNACGIRYRKRRGCCSKGQERERKREKAEATS-SDNDDLSECLKMKLVALGEEFLL---QKKQRMIKLGEEEQAAVCLMALSCGFVFA 129
BLAST of Ca_01115 vs. TrEMBL
Match: A5BCR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042395 PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 4.175e-20 Identity = 66/134 (49.25%), Postives = 76/134 (56.72%), Query Frame = 1 Query: 7 IMDQMDKECCSYKEMSVIXXXXXXXXXXXXPLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLL---NSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 +MD KE S +EM+ I PLWRGGP GPK+LCNACGIRYRKRR G+ DL LK L+ALG EV++ S +KKQR KLGEEEQAAV LMA+SCG VFA Sbjct: 1 MMDLSKKESLS-EEMNEIKKCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRSSMVGVNKKKERMN-------SGSHDLSETLKQSLMALGNEVMMQRQRSSVKKQRR-KLGEEEQAAVLLMALSCGSVFA 125
BLAST of Ca_01115 vs. TrEMBL
Match: F6I4R1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01520 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 5.452e-20 Identity = 66/133 (49.62%), Postives = 75/133 (56.39%), Query Frame = 1 Query: 10 MDQMDKECCSYKEMSVIXXXXXXXXXXXXPLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLL---NSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 MD KE S +EM+ I PLWRGGP GPK+LCNACGIRYRKRR G+ DL LK L+ALG EV++ S +KKQR KLGEEEQAAV LMA+SCG VFA Sbjct: 1 MDLSKKESLS-EEMNEIKKCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRSSMVGVNKKKERMN-------SGSHDLSETLKQSLMALGNEVMMQRQRSSVKKQRR-KLGEEEQAAVLLMALSCGSVFA 124
BLAST of Ca_01115 vs. TrEMBL
Match: D7SY67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01450 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.485e-17 Identity = 57/110 (51.82%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRR--------GCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLN-SVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP GPK+LCNACGIR RK+R G + G GN+ L LK +L ALG EVLL S ++KQR KLGEEEQAAV LMA+S G+V+A Sbjct: 45 PLWRGGPAGPKSLCNACGIRSRKKRRAFLGLNKGSTDDRKAKRSSNHSHNNGGGNGNNKLGDSLKRRLFALGREVLLQRSTVEKQRR-KLGEEEQAAVLLMALSYGYVYA 153
BLAST of Ca_01115 vs. TrEMBL
Match: M5XTT2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013171mg PE=4 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 9.008e-15 Identity = 49/101 (48.51%), Postives = 60/101 (59.41%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLNSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP GPK+LCNACGIR RK+R N G+ LK +L+ALG EVL+ +++ KLGEEEQAAV LMA+S G V+A Sbjct: 41 PLWRGGPAGPKSLCNACGIRSRKKRRAILGLNKENPNDKKGKRNKQLGDG-----LKQRLLALGREVLMQRSTVERQRRKLGEEEQAAVLLMALSYGSVYA 136
BLAST of Ca_01115 vs. TrEMBL
Match: B9HX95_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_880193 PE=4 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 9.008e-15 Identity = 48/101 (47.52%), Postives = 59/101 (58.42%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLNSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP GPK+LCNACGIR RK++ N+ LK +L+ALG EVL+ ++R KLGEEEQAAV LMA+S G V+A Sbjct: 25 PLWRGGPAGPKSLCNACGIRSRKKKRDILGLNKGGAAANDKRAKKGSTNNGSSDGLKQRLLALGREVLVQGSTVERRRRKLGEEEQAAVLLMALSYGSVYA 125
BLAST of Ca_01115 vs. TrEMBL
Match: Q850Z5_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=OSJNBb0027B08.10 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.537e-14 Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLNSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP+GPK+LCNACGIRYRK+R V +++++V G+EV+L + +R +LGEEE+AA+ LMA+S G ++A Sbjct: 36 PLWRGGPSGPKSLCNACGIRYRKKRREALGLDAGEGGAERQEKKKSKRERGEEVTMELRMVGFGKEVVLKQRRRMRRRRRLGEEEKAAILLMALSSGVIYA 136
BLAST of Ca_01115 vs. TrEMBL
Match: A2XNM3_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14166 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.537e-14 Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLNSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP+GPK+LCNACGIRYRK+R V +++++V G+EV+L + +R +LGEEE+AA+ LMA+S G ++A Sbjct: 36 PLWRGGPSGPKSLCNACGIRYRKKRREALGLDAGEGGAERQEKKKSKRERGEEVTMELRMVGFGKEVVLKQRRRMRRRRRLGEEEKAAILLMALSSGVIYA 136
BLAST of Ca_01115 vs. TrEMBL
Match: R0EY23_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027332mg PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.621e-14 Identity = 49/102 (48.04%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYR-KRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLNSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP GPK+LCNACGIR R KRRG + GGN LK +L+ LG + ++V K++R KL EEEQAAV LMA++ G V+A Sbjct: 43 PLWRGGPAGPKSLCNACGIRNRKKRRGTTEDDDDDKNKKLKNKSSSGGGNPKFGESLKQRLIDLGMKKSQSTVEKQRR--KLDEEEQAAVLLMALAYGSVYA 142
BLAST of Ca_01115 vs. TrEMBL
Match: M1CB78_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024783 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.423e-14 Identity = 52/150 (34.67%), Postives = 73/150 (48.67%), Query Frame = 1 Query: 10 MDQMDKECCSYKEMSVIXXXXXXXXXXXXPLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVC----------------LKMKLVALGEEVLL-----NSVMKKQRMIKLGEEEQAAVCLMAISCGFVF 396 MD KE S E + I PLWR GP+GPK+LCNACGI+YRK++ + G +++ C L++KL+ LG+EV++ +S+ K + KL E E+AAV LMA+SCG VF Sbjct: 1 MDPTQKEESSGSEATGISKSCSDCKTTKTPLWRSGPSGPKSLCNACGIKYRKKKSSPIGLTKGATKKKEKPLSNSGSTEEVEYCKKGKIGNGKDGKLSKVLRVKLMMLGKEVVILQRQRSSMKKPRNQRKLDEVERAAVLLMALSCGSVF 150
BLAST of Ca_01115 vs. DB:Swiss
Match: GAT15_ARATH (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 2.744e-20 Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLN-SVMKKQRMIKLGEEEQAAVCLMAIS-CGFVFA 399 PLWRGGP GPK+LCNACGIR RK+R E ++K+ N G+ LK +L+ LG EV++ S + QR KLGEEEQAAV LMA+S V+A Sbjct: 52 PLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPKFGD-----SLKQRLMELGREVMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149
BLAST of Ca_01115 vs. DB:Swiss
Match: GAT16_ARATH (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.292e-20 Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYR-KRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKLVALGEEVLLNSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP GPK+LCNACGIR R KRRG + K+ GGN LK L+ LG + S ++KQR KLGEEEQAAV LMA+S G V+A Sbjct: 47 PLWRGGPVGPKSLCNACGIRNRKKRRGGTEDNKKLKKSSSG------GGNRKFGESLKQSLMDLG--IRKRSTVEKQRQ-KLGEEEQAAVLLMALSYGSVYA 139
BLAST of Ca_01115 vs. DB:Swiss
Match: GAT17_ARATH (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 4.322e-11 Identity = 49/138 (35.51%), Postives = 67/138 (48.55%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRRGCCNXXXXXXXXXXXXXXNGVGGNDDLRVCLKMKL----------------------------------VALGEEVLL---NSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 399 PLWRGGP GPK+LCNACGI+ RK+R E+++K ++ N D R K K+ + LG +V + ++V KK+ KLGEEE+AAV LMA+SC V+A Sbjct: 53 PLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVPVMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190
BLAST of Ca_01115 vs. DB:Swiss
Match: GAT23_ARATH (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2) HSP 1 Score: 53.5286 bits (127), Expect = 6.623e-9 Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1 Query: 97 PLWRGGPNGPKTLCNACGIRYRKRR 171 P+WRGGP GPK+LCNACGIR+RK+R Sbjct: 37 PMWRGGPTGPKSLCNACGIRHRKQR 61 The following BLAST results are available for this feature:
BLAST of Ca_01115 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot) Total hits: 4
BLAST of Ca_01115 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_01115 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_01115_v1.0_kabuli ID=Ca_01115_v1.0_kabuli; Name=Ca_01115; organism=Cicer arietinum; type=mRNA; length=402bpback to top protein sequence of Ca_01115_v1.0_kabuli >Ca_01115_v1.0_kabuli ID=Ca_01115_v1.0_kabuli; Name=Ca_01115_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=133bpback to top mRNA from alignment at Ca3:37767099..37767988+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_01115_v1.0_kabuli ID=Ca_01115_v1.0_kabuli; Name=Ca_01115; organism=Cicer arietinum; type=mRNA; length=890bp; location=Sequence derived from: Ca3:37767099..37767988+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:37767099..37767988+ >Ca_01115_v1.0_kabuli ID=Ca_01115_v1.0_kabuli; Name=Ca_01115; organism=Cicer arietinum; type=CDS; length=402bp; location=Sequence derived from: Ca3:37767099..37767988+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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