Ca_07258, Ca_07258_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_07258 vs. TrEMBL
Match: I1JX02_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 233.802 bits (595), Expect = 3.730e-59 Identity = 126/190 (66.32%), Postives = 147/190 (77.37%), Query Frame = 1 Query: 7 GTGNDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESIVTCDTDAVEYAACRDPAEVIMKENDADVALGALESSLLEITSQTTKEEAEFQGQQKIYEN 576 G G+D QKQL S+IRNFA E+SQGERRVV LRKQIE L SELSE NAELE +KRCKELVEQ+LKGFE+ L L+E+S QTLEARVSL Q +S V S LETLK E REQF H ML +N KIRKFQESI+TCD D+ A D ++V MKENDA+VA+ ALES+LLE+ SQ KE+ E+Q +QK YEN Sbjct: 7 GRGSDSQKQLWSLIRNFAAEKSQGERRVVNLRKQIEKLKSELSEANAELENAKRCKELVEQDLKGFEVQLMLTESSAQTLEARVSLIQNHISAVGSDLETLKSEEADLREQFFHNMLHMNGKIRKFQESIITCDIDS---TASTDASQVTMKENDAEVAIMALESTLLEVVSQIAKEDEEYQAEQKNYEN 193
BLAST of Ca_07258 vs. TrEMBL
Match: C6T634_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 6.362e-59 Identity = 126/190 (66.32%), Postives = 147/190 (77.37%), Query Frame = 1 Query: 7 GTGNDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESIVTCDTDAVEYAACRDPAEVIMKENDADVALGALESSLLEITSQTTKEEAEFQGQQKIYEN 576 G G+D QKQL S+IRNFA E+SQGERRVV LRKQIE L SELSE NAELE +KRCKELVEQ+LKGFE+ L L+E+S QTLEARVSL Q +S V S LETLK E REQF H ML +N KIRKFQESI+TCD D+ A D ++V MKENDA+VA+ ALES+LLE+ SQ KE+ E+Q +QK YEN Sbjct: 7 GRGSDSQKQLWSLIRNFAAEKSQGERRVVNLRKQIEKLKSELSEANAELENAKRCKELVEQDLKGFEVQLMLTESSAQTLEARVSLIQNHISAVGSDLETLKSEEADLREQFFHNMLHMNGKIRKFQESIITCDIDS---TASIDASQVTMKENDAEVAIMALESTLLEVVSQIAKEDEEYQAEQKNYEN 193
BLAST of Ca_07258 vs. TrEMBL
Match: K7KVV8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 4.143e-42 Identity = 105/194 (54.12%), Postives = 125/194 (64.43%), Query Frame = 1 Query: 1 MAGTG--NDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESIVTCDTDAVEYAACRDPAEVIMKENDADVALGALESSLLEITSQTTKEEAEFQGQQKIYEN 576 MAGTG +D QKQL+S+IR+FA E+SQGERRVV LRKQIE L SELSE NAELE +KR KELVEQ+L+GFE+ L L+E+SVQTL ARVSL Q +S VES ETL+ E REQF H +L +N KIR ALES+LLE+ SQT KE+ E+Q +QKIYEN Sbjct: 1 MAGTGRGSDSQKQLLSLIRDFAAEKSQGERRVVNLRKQIEKLTSELSEANAELENAKRYKELVEQDLRGFEVQLMLTESSVQTLAARVSLIQGHISAVESDFETLRSEEAALREQFFHNILHMNGKIR-------------------------------------ALESTLLEVISQTAKEDQEYQAEQKIYEN 157
BLAST of Ca_07258 vs. TrEMBL
Match: M4E971_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025327 PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 7.813e-41 Identity = 108/275 (39.27%), Postives = 164/275 (59.64%), Query Frame = 1 Query: 13 GNDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESIVTC--DTDAVEYAACRDPAEVIMKENDADVALGALESSLLEITSQTTKEEAEFQGQQKIYEN----------------HITKAT---------------IFLTGNKQSSKLEATHSSLGEELQNRSKCPRCHLDNLESLSAVLQANE 738 G D QKQL+S+IR+F +ERS+GE+RVV L+K+IE+L SE+ N E+EK+KR KE+ E+EL G+E+ L++A++Q+LEAR++L Q ++S V + ++ LK++ + R+QFI QM++LN +IR FQ ++ + + D+ A EV + AD A++ L ++ SQ KEE + +Q I E IT+ T + LT N QSS+LE T +SLGEELQ R +C C +NLE LS +LQ ++ Sbjct: 3 GIDTQKQLLSLIRDFTSERSRGEQRVVGLKKRIESLQSEVEAANEEVEKAKRIKEVAEEELNGYEVESSLNDATIQSLEARIALLQDEVSTVGNEVDALKNKEGLLRDQFISQMVELNKEIRVFQRTVASSVGNDDSTSITA---NVEVFEDGHGADSQ--AIKDMLSDVNSQLAKEEEGYLAEQNIKEQLQKELDEYEKKMSLMEAITEKTNSVHALAEYPYSRRIVSLTCNTQSSELEQTLASLGEELQKRCRCQHCQAENLEVLSLLLQGDQ 272
BLAST of Ca_07258 vs. TrEMBL
Match: F4IZ28_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=AT3G28370 PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 9.251e-34 Identity = 82/187 (43.85%), Postives = 126/187 (67.38%), Query Frame = 1 Query: 13 GNDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESIVTCDTDAVEYAACRDPAEVIMKENDADVALGALESSLLEITSQTTKEEAEFQGQQKIYE 573 G D QKQL+S+IR+F +ERS+GE+RVV L+K+IE L SE+ N+E+EK+KR KE+ E+EL G+E+ L L++A++Q+LEAR+SL Q +++ + S ++ LK++ + R+QFI QM +LN +IR+FQ+ T D+ A V E+ + L A++ L E+ SQ KEE + +QKI E Sbjct: 3 GIDTQKQLLSLIRDFTSERSRGEQRVVGLKKRIEILQSEVEAANSEVEKAKRIKEVAEEELNGYEVELSLNDATIQSLEARISLLQDEVTTIGSEVDALKNKEGLLRDQFISQMEELNKEIREFQK---TVDSSLSSDDGIGITANVKASEDGSGADLEAIKGMLSEVNSQLAKEEEGYLAEQKIQE 186
BLAST of Ca_07258 vs. TrEMBL
Match: K4BBP9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g087420.1 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.131e-31 Identity = 78/186 (41.94%), Postives = 119/186 (63.98%), Query Frame = 1 Query: 13 GNDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESIVTCDTDAVEYAACRDPAEVIMKENDADVALGALESSLLEITSQTTKEEAEFQGQQKIY 570 GND QKQ ++++R FA+E+SQGERR+V +K+ + L SEL AE+E++K KE EQELK +E+ L +E+++QTLE + Q ++S S +E+LK++ +R+ FI +M +LNA+IRKF ESI + + + P K DA+ G L++ L +I SQ TKEE E+Q +Q I+ Sbjct: 3 GNDSQKQFLTLLREFASEKSQGERRIVNHKKRNQQLQSELQLAYAEVEEAKNQKETAEQELKVYEVELARNESAIQTLEEGILWIQDELSAYGSNVESLKNKEAETRDDFIEKMFELNAQIRKFHESIASIFRNDDCSTSASKPGSAKAKAEDAEAFKGDLQNKLAQIVSQITKEEEEYQVEQNIH 188
BLAST of Ca_07258 vs. TrEMBL
Match: D7LPT2_ARALL (Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_484614 PE=4 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.487e-31 Identity = 79/187 (42.25%), Postives = 124/187 (66.31%), Query Frame = 1 Query: 13 GNDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESIVTCDTDAVEYAACRDPAEVIMKENDADVALGALESSLLEITSQTTKEEAEFQGQQKIYE 573 G D QKQL+S+IR+F +ERS+GE+RVV L+K+IE L SE+ N+E+E +KR KE+ E+EL G+E+ L L++A++Q+LEAR+SL Q ++S V S ++ LK++ R+QFI QM +LN +IR+FQ+ T D+ + V E+ + A++ L +++SQ KEE + ++KI E Sbjct: 3 GIDTQKQLLSLIRDFTSERSRGEQRVVGLKKRIEILQSEIEAANSEVENAKRIKEVAEEELNGYEVELSLNDATIQSLEARISLLQDEVSTVGSEVDALKNKEGFLRDQFISQMEELNKEIREFQK---TVDSTFGNDDSTGITPNVKAFEDSSGADSEAIKGMLSDVSSQLAKEEEGYLAEKKIQE 186 HSP 2 Score: 22.7126 bits (47), Expect = 1.487e-31 Identity = 9/36 (25.00%), Postives = 22/36 (61.11%), Query Frame = 3 Query: 633 SNTQFTW*GTSEQIQVS*MSSGQFGVSQCGSAGK*R 740 ++ +FTW G ++++ + + +FG + S+G+ R Sbjct: 224 ADIRFTWGGAAKEMPMPTLPGRKFGSLELTSSGRSR 259
BLAST of Ca_07258 vs. TrEMBL
Match: R0FRB2_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10018018mg PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.929e-31 Identity = 79/191 (41.36%), Postives = 127/191 (66.49%), Query Frame = 1 Query: 1 MAGTGNDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESIVTCDTDAVEYAACRDPAEVIMKENDADVALGALESSLLEITSQTTKEEAEFQGQQKIYE 573 MAGT D QKQL+S+IR+F +ERS+GE+RVV L+K+IE L SE+ N+ELEK+KR KE+ E+EL G+E+ L ++A++Q+LEAR+ Q ++S++ + ++ K+ + R+QFI QM DLN +IR+FQ ++ + ++ A V E+ +V A+++ + ++ SQ KEE + +QKI E Sbjct: 1 MAGT--DTQKQLLSLIRDFTSERSRGEQRVVGLKKRIEVLQSEVESANSELEKAKRIKEVAEEELNGYEVELSFNDATIQSLEARIGHLQDEVSIIGNEVDARKNNEGLLRDQFISQMEDLNKEIREFQRTVESSFSNGDSTGV---TANVKAFEDGYEVDSEAIKNMISDVNSQLAKEEEGYLVEQKIQE 186
BLAST of Ca_07258 vs. TrEMBL
Match: B9RUI0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0853030 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.382e-29 Identity = 80/185 (43.24%), Postives = 117/185 (63.24%), Query Frame = 1 Query: 13 GNDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESIVTCDTDAVEYAACRDPAEVIMKENDADVALGALESSLLEITSQTTKEEAEFQGQQKI 567 G D +KQL+++IR+ A+E+SQGERRV+ L+K++ + +E+ NAELE SKR KE +EQ+LKGFE+ L L+ A +Q+LEARV Q ++S + S ++ LK+E SR++FI QM+ L +IR+FQE I A E+ EN + L + +I SQTTKEE E+ +Q I Sbjct: 3 GIDQKKQLLTLIRDCASEKSQGERRVIGLKKRLVEIRTEVETENAELEASKRLKETIEQQLKGFEVELALNVAFIQSLEARVFQIQDEISSIGSEVDGLKNEERTSRDEFIEQMVKLGTRIRRFQEKI------ASEFQKENSIGTTAETENKVESDSRILADMVDQIVSQTTKEEQEYLVEQII 181
BLAST of Ca_07258 vs. TrEMBL
Match: M7ZIG2_TRIUA (Uncharacterized protein OS=Triticum urartu GN=TRIUR3_19679 PE=4 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 4.022e-29 Identity = 98/294 (33.33%), Postives = 145/294 (49.32%), Query Frame = 1 Query: 4 AGTGNDPQKQLISIIRNFATERSQGERRVVALRKQIETLISELSEVNAELEKSKRCKELVEQELKGFELHLFLSEASVQTLEARVSLTQVDMSVVESYLETLKDEGVISREQFIHQMLDLNAKIRKFQESI-----------------------VTCD-----TDAVEYAACRDPAEVIMKENDADVALGALES------------SLLEITSQTTKEEAEFQGQQ-KIYENHITKATIF-------------------LTGNKQSSKLEATHSSLGEELQNRSKCPRCHLDNL 705 + G +PQKQ +SIIR+FA E+S GER V L+++++ ++S AELE +KR +E E EL+G E+ +++AS+Q LEA +S Q +++ + S LE LK I RE+F+ QML++NA+IR+FQ+ T D TD+V+ + AEV + E + L LE +L+E + TK+ E G + +NH ATI LT K+ S+LE H SL EELQ R CP C +N+ Sbjct: 6 SAAGGEPQKQFLSIIRDFAAEKSHGERTVSGLKRRLDDVVSASDAATAELEAAKRAREAAETELRGSEVQASIADASIQALEATISRLQEEIAKLGSELEALKSTEDIEREEFLRQMLEMNARIRQFQQKASAELAERCSGPPSADGQNVSDMNETMDSEGMLTDSVDQMN-KMNAEVHVLEEEYQKDLLELEKLRHELADVRAKRALMEAVMKETKKLQELGGYPFHLSKNHFVCATIIYMYICSCRFFIRVCLRKLSLTRRKRVSELENVHHSLAEELQKRYICPGCGTNNM 298 The following BLAST results are available for this feature:
BLAST of Ca_07258 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_07258 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_07258_v1.0_kabuli ID=Ca_07258_v1.0_kabuli; Name=Ca_07258; organism=Cicer arietinum; type=mRNA; length=747bpback to top protein sequence of Ca_07258_v1.0_kabuli >Ca_07258_v1.0_kabuli ID=Ca_07258_v1.0_kabuli; Name=Ca_07258_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=248bpback to top mRNA from alignment at Ca3:29529855..29533501- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_07258_v1.0_kabuli ID=Ca_07258_v1.0_kabuli; Name=Ca_07258; organism=Cicer arietinum; type=mRNA; length=3647bp; location=Sequence derived from: Ca3:29529855..29533501- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:29529855..29533501- >Ca_07258_v1.0_kabuli ID=Ca_07258_v1.0_kabuli; Name=Ca_07258; organism=Cicer arietinum; type=CDS; length=747bp; location=Sequence derived from: Ca3:29529855..29533501- (Cicer arietinumback to top |