Ca_08104, Ca_08104_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_08104
Unique NameCa_08104_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length783
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca3chromosomeCa3:28076512..28078461 +Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR197Pisum sativum Cameor genome v1aPisum sativum
cavuR163Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR194Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0365Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0086Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0937Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL265Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR172Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR221Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR222Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR171Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR249Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR154Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR081Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL439Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR183Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.001G119100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat03G0272400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_21835Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun01g103300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va03G062540.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-KK1_018674Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr01.1022Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_014635667.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.5g097480.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan10g024500Vigna angularis Jingnong 6 genome v1.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004493275.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08104-CDS1Ca_08104-CDS1Cicer arietinumCDS
Ca_08104-CDS2Ca_08104-CDS2Cicer arietinumCDS
Ca_08104-CDS3Ca_08104-CDS3Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_08104_v1.0_kabuliCa_08104_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_08104 vs. SwissProt
Match: PPD6_ARATH (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.343e-85
Identity = 161/242 (66.53%), Postives = 186/242 (76.86%), Query Frame = 1
Query:   55 SLRASASVSVHETHFQHTPRRDFLKGIAXXXXXXXXXXXXXXXHSQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            S++A + V V  +  Q  PRR  L  +                 S ARE+EVG               KA   DTPALRAGNVQPYQF+LPP WKQ R+ANILSGNYCQPKCAEPW+EVKFE+EKQGK+QVVASPLIRLTNKPNATIED+G PEKVIASLGPFVTGN+ D DELL+TSIEK+ DQTYYKYVLETP+ALTGSHNLAKATAKG+TVVLFVVSA +KQWQ+S+KTL+++LDSF++
Sbjct:   22 SIKARSRVVVASSQQQQQPRRRELL-LKSAVAIPAILQLKEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262          
BLAST of Ca_08104 vs. SwissProt
Match: PPD4_ARATH (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.951e-16
Identity = 50/160 (31.25%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  307 PYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNK--PNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            PY F +P  W +  V+    G           ++++F   K+G++ V+ +P++R  +    +  IE+IG P KVI + GP V G  ++  ++L +++ + D + YY++ LE P      H L  ATA GN + LF V+ N  QW+   K LK +  SF++
Sbjct:  115 PYAFSVPQDWNEVPVSIADLGG--------TEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVE-GKVLSSNVAEHDGRLYYQFELEPP------HVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRI 259          
BLAST of Ca_08104 vs. TrEMBL
Match: A2Q6H0_MEDTR (PsbP domain-containing protein OS=Medicago truncatula GN=MTR_7g088880 PE=1 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 1.878e-96
Identity = 184/241 (76.35%), Postives = 196/241 (81.33%), Query Frame = 1
Query:   58 LRASASVSVHETHFQHTPRRDFLKGIAXXXXXXXXXXXXXXXHSQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            ++AS+S+SV        PRR+FLKGIA                SQARE+ VG               KAS KDTPALRAGNVQPYQF+LPPTWKQ R+ANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEK+IASLGPFVTGNTLDPDELLE S+EK+DDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFV SANDKQWQTSEK LK+MLDSFKV
Sbjct:   30 IKASSSISV--------PRREFLKGIALSLPLIALTEPP---QSQAREVSVGSFLPPSSSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTLDPDELLEASVEKIDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTSEKILKTMLDSFKV 259          
BLAST of Ca_08104 vs. TrEMBL
Match: I1N8N4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 2.712e-95
Identity = 182/242 (75.21%), Postives = 200/242 (82.64%), Query Frame = 1
Query:   55 SLRASASVSVHETHFQHTPRRDFLKGIAXXXXXXXXXXXXXXXHSQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            ++RASAS  V     QHT RR+FLKG+A                S ARE+EVG               KAS+KDTPALRAGNVQPY+F+LPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGK+QVVASPLIRLTNKPNATIEDIGSPEK+IASLGPFVTGNT DP+ELLETS+EKL DQTYYKYVLETPYALTG+HNLAKATAKGNTVVLFVVSANDKQWQTSE+TLK++L+SF+V
Sbjct:   23 AIRASASEYVPS---QHTLRREFLKGVAALMPLPLVVLIEPPP-SDAREVEVGSFLPPSPSDPSFVLFKASAKDTPALRAGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTFDPEELLETSVEKLGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTSEETLKAVLNSFEV 260          
BLAST of Ca_08104 vs. TrEMBL
Match: I1JN14_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 3.916e-94
Identity = 178/244 (72.95%), Postives = 199/244 (81.56%), Query Frame = 1
Query:   49 FRSLRASASVSVHETHFQHTPRRDFLKGIAXXXXXXXXXXXXXXXHSQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            F ++RAS       +  +HT RR+FLKG+A               H  ARE+EVG               KA+ KDTPALRAGNVQPY+F+LPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGK+QVVASPLIRLTNKPNA+IEDIGSPEK+IASLGPFVTGNTLDPDELLETS+EK+ DQTYYKYVLETPYALTG+HNLAKATAKGNTVVLFVVSANDKQWQTSE+TLK++L+SF+V
Sbjct:   26 FHAIRASLDSEYVAS--RHTLRREFLKGVALMPLPLVVMREPPPSH--AREVEVGSFLPPSPSDPSFVLFKATPKDTPALRAGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEDIGSPEKLIASLGPFVTGNTLDPDELLETSVEKIGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTSEETLKAVLNSFEV 265          
BLAST of Ca_08104 vs. TrEMBL
Match: C6TA42_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 2.538e-93
Identity = 177/244 (72.54%), Postives = 198/244 (81.15%), Query Frame = 1
Query:   49 FRSLRASASVSVHETHFQHTPRRDFLKGIAXXXXXXXXXXXXXXXHSQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            F ++RAS       +  +HT RR+FLKG+A               H  ARE+EVG               KA+ KDTPA RAGNVQPY+F+LPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGK+QVVASPLIRLTNKPNA+IEDIGSPEK+IASLGPFVTGNTLDPDELLETS+EK+ DQTYYKYVLETPYALTG+HNLAKATAKGNTVVLFVVSANDKQWQTSE+TLK++L+SF+V
Sbjct:   26 FHAIRASLDSEYVAS--RHTLRREFLKGVALMPLPLVVMREPPPSH--AREVEVGSFLPPSPSDPSFVLFKATPKDTPAPRAGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEDIGSPEKLIASLGPFVTGNTLDPDELLETSVEKIGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTSEETLKAVLNSFEV 265          
BLAST of Ca_08104 vs. TrEMBL
Match: D7TQU9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00850 PE=4 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 1.393e-91
Identity = 174/247 (70.45%), Postives = 196/247 (79.35%), Query Frame = 1
Query:   55 SLRASASVSVHETHFQHTP-----RRDFLKGIAXXXXXXXXXXXXXXXHSQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            S +++ S+  H + F+++P     RR+FLKG+A                + ARE+EVG               KAS KDTPALRAGNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDE QGK+QVVASPLIRLTNKPNA+IEDIGSPEK+IASLGPFVTGNT D DELLETS+EKL DQTYYKYVLETP+ALTGSHNLAKATAKGN+VVLFV SANDKQWQ S+KTLK+MLDSF+V
Sbjct:   21 SSKSATSILPHSSPFKNSPNQLTFRREFLKGLALAPLIFISEEALP---AHAREVEVGSYLPTSPSDPSFVLFKASPKDTPALRAGNVQPYQFVLPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDENQGKVQVVASPLIRLTNKPNASIEDIGSPEKLIASLGPFVTGNTYDSDELLETSVEKLGDQTYYKYVLETPFALTGSHNLAKATAKGNSVVLFVASANDKQWQASQKTLKAMLDSFQV 264          
BLAST of Ca_08104 vs. TrEMBL
Match: B9SJN0_RICCO (Thylakoid lumenal 29.8 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1105760 PE=4 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 4.480e-90
Identity = 171/225 (76.00%), Postives = 185/225 (82.22%), Query Frame = 1
Query:  106 TPRRDFLKGIAXXXXXXXXXXXXXXXHSQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            T RR  LKGIA                S+A+E+EVG               KAS KDTPALRAGNVQPYQF+LPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGK+QVVASPLIRLTNKPNATIE+IG+PEK+IASLGPFVTGN+ DPDELLETSIEKL DQTYYKYVLETPYALTG+HNLAKATAKG+TVVLFV SANDKQWQ SEKTLK+++DSF V
Sbjct:   40 TLRRQILKGIAVSPLILIKEAPI----SEAKEVEVGSYLPSSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEEIGTPEKLIASLGPFVTGNSYDPDELLETSIEKLGDQTYYKYVLETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKTLKAIIDSFIV 260          
BLAST of Ca_08104 vs. TrEMBL
Match: B9H8R2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_761967 PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 2.458e-88
Identity = 167/238 (70.17%), Postives = 188/238 (78.99%), Query Frame = 1
Query:   67 SASVSVHETHFQHTPRRDFLKGIAXXXXXXXXXXXXXXXHSQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            + + S+ +   Q   RR  LKG+                 S+AREIEVG               KASSKDTPALRAGNVQPYQF+LPP+WKQ RVANILSGNYCQPKCAEPWVEVKFEDEKQGK+QVVASPLIRLTNKPNATIE+IG+PEK+IASLGPFVTGN+ DPDELLET IEK  DQTYYKY+LETP+ALTG+HNLAKATAKG+TVVLFV SANDKQWQ SEKTLK++LDSF++
Sbjct:   24 TTTTSLDQHRNQVVLRRQILKGLVLSPLILIKAPPS----SEAREIEVGSYLPPSPTDPSFVLFKASSKDTPALRAGNVQPYQFILPPSWKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEEIGNPEKLIASLGPFVTGNSYDPDELLETKIEKFGDQTYYKYMLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKTLKAILDSFQI 257          
BLAST of Ca_08104 vs. TrEMBL
Match: A5BA74_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039682 PE=4 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 2.458e-88
Identity = 162/198 (81.82%), Postives = 174/198 (87.88%), Query Frame = 1
Query:  187 SQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            + ARE+EVG               KAS KDTPALRAGNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDE QGK+QVVASPLIRLTNKPNA+IEDIGSPEK+IASLGPFVTGNT D DELLETS+EKL DQTYYKYVLETP+ALTGSHNLAKATAKGN+VVLFV SANDKQWQ S+KTLK+MLDSF+V
Sbjct:   42 AHAREVEVGSYLPTSPSDPSFVLFKASPKDTPALRAGNVQPYQFVLPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDENQGKVQVVASPLIRLTNKPNASIEDIGSPEKLIASLGPFVTGNTYDSDELLETSVEKLGDQTYYKYVLETPFALTGSHNLAKATAKGNSVVLFVASANDKQWQASQKTLKAMLDSFQV 239          
BLAST of Ca_08104 vs. TrEMBL
Match: M1CGU8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026121 PE=4 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 2.718e-87
Identity = 162/198 (81.82%), Postives = 174/198 (87.88%), Query Frame = 1
Query:  187 SQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            S ARE+EVG               KA+ KDTPALRAGNVQPY F+LPPTWKQ R+ANILSGNYCQPKCAEPWVEVKFEDEKQGK+QVVASPLIRLTNKPNATIEDIG+PEKVIASLGPFVTGNTLDPDELLETSIEK  D TYYKYVLETPYALTGSHNLAKATAKGNTVVL VVSANDKQW +S+KTL+++LDSF+V
Sbjct:   53 SIAREVEVGSFLPPSPTDPNFVLFKATPKDTPALRAGNVQPYTFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGTPEKVIASLGPFVTGNTLDPDELLETSIEKRGDLTYYKYVLETPYALTGSHNLAKATAKGNTVVLCVVSANDKQWASSQKTLQAILDSFEV 250          
BLAST of Ca_08104 vs. TrEMBL
Match: K4C7H8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g065490.2 PE=4 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.033e-86
Identity = 161/198 (81.31%), Postives = 174/198 (87.88%), Query Frame = 1
Query:  187 SQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            S ARE+EVG               KA+ KDTPALRAGNVQPY F+LPPTWKQ R+ANILSGNYCQPKCAEPWVEVKFE+EKQGK+QVVASPLIRLTNKPNATIEDIG+PEKVIASLGPFVTGNTLDPDELLETSIEK  D TYYKYVLETPYALTGSHNLAKATAKGNTVVL VVSANDKQW +S+KTL+++LDSF+V
Sbjct:   53 SIAREVEVGSFLPPSPTDPNFVLFKATPKDTPALRAGNVQPYTFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFENEKQGKVQVVASPLIRLTNKPNATIEDIGTPEKVIASLGPFVTGNTLDPDELLETSIEKRGDLTYYKYVLETPYALTGSHNLAKATAKGNTVVLCVVSANDKQWASSQKTLQAILDSFEV 250          
BLAST of Ca_08104 vs. DB:Swiss
Match: PPD6_ARATH (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 8.298e-112
Identity = 164/198 (82.83%), Postives = 185/198 (93.43%), Query Frame = 1
Query:  187 SQAREIEVGXXXXXXXXXXXXXXXKASSKDTPALRAGNVQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            S ARE+EVGS+LP S SDPSFVLFKA   DTPALRAGNVQPYQF+LPP WKQ R+ANILSGNYCQPKCAEPW+EVKFE+EKQGK+QVVASPLIRLTNKPNATIED+G PEKVIASLGPFVTGN+ D DELL+TSIEK+ DQTYYKYVLETP+ALTGSHNLAKATAKG+TVVLFVVSA +KQWQ+S+KTL+++LDSF++
Sbjct:   65 SAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262          
BLAST of Ca_08104 vs. DB:Swiss
Match: PPD4_ARATH (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD4 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.415e-19
Identity = 51/163 (31.29%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  301 VQPYQFLLPPTWKQARVANI-LSGNYCQPKCAEPWVEVKFEDEKQGKIQVVASPLIRLTNK--PNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKLDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKTLKSMLDSFKV 780
            + PY F +P  W +  V+   L G           ++++F   K+G++ V+ +P++R  +    +  IE+IG P KVI + GP V G  ++  ++L +++ + D + YY++ LE P      H L  ATA GN + LF V+ N  QW+   K LK +  SF++
Sbjct:  113 IIPYAFSVPQDWNEVPVSIADLGGTE---------IDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVE-GKVLSSNVAEHDGRLYYQFELEPP------HVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRI 259          
The following BLAST results are available for this feature:
BLAST of Ca_08104 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
PPD6_ARATH1.343e-8566.53PsbP domain-containing protein 6, chloroplastic OS... [more]
PPD4_ARATH2.951e-1631.25PsbP domain-containing protein 4, chloroplastic OS... [more]
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BLAST of Ca_08104 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A2Q6H0_MEDTR1.878e-9676.35PsbP domain-containing protein OS=Medicago truncat... [more]
I1N8N4_SOYBN2.712e-9575.21Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1JN14_SOYBN3.916e-9472.95Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6TA42_SOYBN2.538e-9372.54Putative uncharacterized protein OS=Glycine max PE... [more]
D7TQU9_VITVI1.393e-9170.45Putative uncharacterized protein OS=Vitis vinifera... [more]
B9SJN0_RICCO4.480e-9076.00Thylakoid lumenal 29.8 kDa protein, chloroplast, p... [more]
B9H8R2_POPTR2.458e-8870.17Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5BA74_VITVI2.458e-8881.82Putative uncharacterized protein OS=Vitis vinifera... [more]
M1CGU8_SOLTU2.718e-8781.82Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4C7H8_SOLLC1.033e-8681.31Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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BLAST of Ca_08104 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
PPD6_ARATH8.298e-11282.83PsbP domain-containing protein 6, chloroplastic OS... [more]
PPD4_ARATH1.415e-1931.29PsbP domain-containing protein 4, chloroplastic OS... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683Photosystem II PsbP, oxygen evolving complexPFAMPF01789PsbPcoord: 102..260
score: 2.2
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3D3.40.1000.10no descriptioncoord: 91..260
score: 1.2
IPR016124Mog1/PsbP/DUF1795, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 94..260
score: 2.1
NoneNo IPR availableSEGsegsegcoord: 3..16
score: NAcoord: 47..61
score: NAcoord: 72..86
score
NoneNo IPR availableSEGsegsegcoord: 3..14
score: NAcoord: 30..54
score
NoneNo IPR availableSEGsegsegcoord: 10..14
score
NoneNo IPR availableSEGsegsegcoord: 1..15
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_08104_v1.0_kabuli ID=Ca_08104_v1.0_kabuli; Name=Ca_08104; organism=Cicer arietinum; type=mRNA; length=783bp
ATGGCAACCTCCCTTCTTCTACCACTCACAACTTCAAAGCTCTCACCTTT
TCGTTCTTTGAGAGCCTCAGCTTCTGTCTCAGTTCATGAAACTCACTTTC
AACACACACCCAGAAGAGATTTCTTAAAGGGTATTGCTTTGCAGACTCTT
TCACTTCCACTTCTTGTTCTCACAAACCCACTTCATTCTCAAGCTAGAGA
AATTGAAGTTGGCTCCTTTCTTCCACCTTCTTCATCAGACCCTTCTTTTG
TTCTCTTCAAAGCTTCTTCTAAGGACACTCCTGCCCTTCGTGCAGGAAAT
GTGCAGCCATACCAATTTCTCCTTCCCCCAACATGGAAACAAGCTCGTGT
AGCTAACATTCTATCAGGAAATTACTGTCAACCAAAATGTGCAGAGCCAT
GGGTGGAGGTTAAATTTGAAGATGAAAAACAAGGAAAAATTCAGGTAGTT
GCTTCGCCTTTGATACGCCTTACCAACAAACCAAATGCAACAATTGAGGA
CATCGGGAGCCCGGAAAAGGTGATCGCTTCTCTTGGCCCATTTGTCACCG
GAAACACTTTAGATCCAGATGAGCTCCTTGAGACTTCGATTGAAAAGCTT
GATGATCAAACGTACTACAAATATGTGCTTGAAACTCCATATGCTCTAAC
TGGTTCACACAATCTTGCAAAAGCAACAGCAAAGGGAAATACTGTTGTTT
TGTTTGTGGTTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGAAGACT
CTAAAGTCCATGCTTGATTCCTTTAAAGTGTAG
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protein sequence of Ca_08104_v1.0_kabuli

>Ca_08104_v1.0_kabuli ID=Ca_08104_v1.0_kabuli; Name=Ca_08104_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=260bp
MATSLLLPLTTSKLSPFRSLRASASVSVHETHFQHTPRRDFLKGIALQTL
SLPLLVLTNPLHSQAREIEVGSFLPPSSSDPSFVLFKASSKDTPALRAGN
VQPYQFLLPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVV
ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTLDPDELLETSIEKL
DDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVVSANDKQWQTSEKT
LKSMLDSFKV
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mRNA from alignment at Ca3:28076512..28078461+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_08104_v1.0_kabuli ID=Ca_08104_v1.0_kabuli; Name=Ca_08104; organism=Cicer arietinum; type=mRNA; length=1950bp; location=Sequence derived from: Ca3:28076512..28078461+ (Cicer arietinum
ATGGCAACCTCCCTTCTTCTACCACTCACAACTTCAAAGCTCTCACCTTT TCGTTCTTTGAGAGCCTCAGCTTCTGTCTCAGTTCATGAAACTCACTTTC AACACACACCCAGAAGAGATTTCTTAAAGGGTATTGCTTTGCAGACTCTT TCACTTCCACTTCTTGTTCTCACAAACCCACTTCATTCTCAAGCTAGAGA AATTGAAGTTGGCTCCTTTCTTCCACCTTCTTCATCAGACCCTTCTTTTG TTCTCTTCAAAGCTTCTTCTAAGGACACTCCTGCCCTTCGTGCAGGTACA TTGATCTTTCATTTTAGGAGTTCTGTTGAAAATTAAAAATATAACAATGA ACTTTGGAGGTTTATTAGGCTTAATTACCATTTAGTTAGAAATAATTTTT AAATTCATCTTTTTCCCAGCTGATTCATATATCATAATCAATAGTGATTC TCTCTATGGTCCTATGTTGCACCATTCATATATTATAATAAATTTTAAGT TCAGGTTTCTAATCACTATGCCTTTTCTCTTCTATATAAATTCATTTGGA ATTAAGAGATGAAACCATATCTCAAGCATTTCATCTTGTATACTGCTGTT CTTTGCAATTGATAGTTTAGATATTAGTTATTTGCAGGAAATGTGCAGCC ATACCAATTTCTCCTTCCCCCAACATGGAAACAAGCTCGTGTAGCTAACA TTCTATCAGGAAATTACTGTCAACCAAAATGTGCAGAGCCATGGGTGGAG GTTAAATTTGAAGATGAAAAACAAGGAAAAATTCAGGTAGTTGCTTCGCC TTTGATACGCCTTACCAACAAACCAAATGCAACAATTGAGGACATCGGGA GCCCGGAAAAGGTGATCGCTTCTCTTGGCCCATTTGTCACCGGAAACACT TTAGATCCAGATGAGCTCCTTGAGACTTCGATTGAAAAGCTTGATGATCA AACGGTAAGTTTTCTTTCTAGAGTTTAATTTTTGTATACTGTCAATGTTT TTCAATGTCAACAAATTATAACCAATCATATGTGTGACTTTATAAGTAGT TATGATTAAAGTCAAATGTTATTAGTGGTATAACGGTTATGATTTCAGAA GTAGTTATGATTAAAGGCAAATTATAATCAACGCTTATGAGTTAAATCCT TTTATCTCCAGTCTATGTTGTCTAAACATCTATGCTTTTCTGTTGTTTTA AATTGTTAGAAGATGAAGAAACTAGGGAAAGTACTCTGGTTATATAATAT AGTATTCTTTTAACTCTTTCAACATAATCTAATAGAAACCAATCAGTATT ATTATAGAAAATGGATTCCCTCAATTACAGAACAATGGCATAGCTTCGAG AGTCTGCCAACCTCCAAATGCCGAAAGACTGTTGTTCTGGAACACCAAAA AGTCTCACATTGTTTGAAAATTGAGGCTAAAGATAATTTATAAACACCCA CTTTCATCAACTCAGTGAGGTTCCTTTTAAGACCGAAAATAGGAAATACC TCAAAAATGCAATGCAGCCAACTTGAGGTTAGAACACTACTCATGAAGGA GTTATCTATCATTGTCACAAAATCGACTATATAGACTTCTTCATCATCCT AGCTTAAGTTATGGCAAGGGAATTAAAATGTTTAGTTGAAGCATTTAACT GAAATTTGCAATGTAAAACATACACATGTTCCTCATATTTTTTTAGTACA AATTGCTGCTTGAAATGTAAATTGTTCACTGTTGTTGGCAACTATTAGTG ACTAACAGTACTGAAAATGGTATCTGCAGTACTACAAATATGTGCTTGAA ACTCCATATGCTCTAACTGGTTCACACAATCTTGCAAAAGCAACAGCAAA GGGAAATACTGTTGTTTTGTTTGTGGTTAGTGCCAATGACAAGCAGTGGC AAACTTCTGAGAAGACTCTAAAGTCCATGCTTGATTCCTTTAAAGTGTAG
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Coding sequence (CDS) from alignment at Ca3:28076512..28078461+

>Ca_08104_v1.0_kabuli ID=Ca_08104_v1.0_kabuli; Name=Ca_08104; organism=Cicer arietinum; type=CDS; length=783bp; location=Sequence derived from: Ca3:28076512..28078461+ (Cicer arietinum
ATGGCAACCTCCCTTCTTCTACCACTCACAACTTCAAAGCTCTCACCTTT
TCGTTCTTTGAGAGCCTCAGCTTCTGTCTCAGTTCATGAAACTCACTTTC
AACACACACCCAGAAGAGATTTCTTAAAGGGTATTGCTTTGCAGACTCTT
TCACTTCCACTTCTTGTTCTCACAAACCCACTTCATTCTCAAGCTAGAGA
AATTGAAGTTGGCTCCTTTCTTCCACCTTCTTCATCAGACCCTTCTTTTG
TTCTCTTCAAAGCTTCTTCTAAGGACACTCCTGCCCTTCGTGCAGGAAAT
GTGCAGCCATACCAATTTCTCCTTCCCCCAACATGGAAACAAGCTCGTGT
AGCTAACATTCTATCAGGAAATTACTGTCAACCAAAATGTGCAGAGCCAT
GGGTGGAGGTTAAATTTGAAGATGAAAAACAAGGAAAAATTCAGGTAGTT
GCTTCGCCTTTGATACGCCTTACCAACAAACCAAATGCAACAATTGAGGA
CATCGGGAGCCCGGAAAAGGTGATCGCTTCTCTTGGCCCATTTGTCACCG
GAAACACTTTAGATCCAGATGAGCTCCTTGAGACTTCGATTGAAAAGCTT
GATGATCAAACGTACTACAAATATGTGCTTGAAACTCCATATGCTCTAAC
TGGTTCACACAATCTTGCAAAAGCAACAGCAAAGGGAAATACTGTTGTTT
TGTTTGTGGTTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGAAGACT
CTAAAGTCCATGCTTGATTCCTTTAAAGTGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP_C
IPR016123Mog1/PsbP_a/b/a-sand
IPR016124Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis