Ca_03463, Ca_03463_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_03463 vs. TrEMBL
Match: G7IF50_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_1g088460 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 1.039e-47 Identity = 96/129 (74.42%), Postives = 105/129 (81.40%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADYSRT 387 ME++ +D VPC+SLAVES LRVGTAGAIWGLCTGPYDA QGL GI RASFVANSVR++GTQCGLVAGVFSITRCGVKKYR +NDWVNGLI R+RS QV GMAGLVS FCA A+YSRT Sbjct: 1 MEEDQNDAVPCSSLAVESMLRVGTAGAIWGLCTGPYDATIQGLRGIPRASFVANSVRIYGTQCGLVAGVFSITRCGVKKYRGRNDWVNGLIGGAVAGATVAARTRSRMQVFGMAGLVSVFCAVAEYSRT 129
BLAST of Ca_03463 vs. TrEMBL
Match: I3T2W3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 4.826e-45 Identity = 91/131 (69.47%), Postives = 106/131 (80.92%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXR--SRSWTQVIGMAGLVSAFCAAADYSRT 387 ME++L++VVPC+SLAVES+LRVGTAGAIWGLC GPY+A +QGLTGI R SFVAN+V FG +CGLVAGVFSITRC +++YRRQ+DWVNGLI +R WTQVIGM G VSAFCAAADYSRT Sbjct: 1 MEEDLNNVVPCSSLAVESSLRVGTAGAIWGLCYGPYEARQQGLTGIPRVSFVANTVGKFGIRCGLVAGVFSITRCRIRQYRRQDDWVNGLIAGAVAGASVAVAAGTRKWTQVIGMTGFVSAFCAAADYSRT 131
BLAST of Ca_03463 vs. TrEMBL
Match: K7LGW8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 4.085e-44 Identity = 90/131 (68.70%), Postives = 103/131 (78.63%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXR--SRSWTQVIGMAGLVSAFCAAADYSRT 387 ME++LD V PC+SLAVE+ +RVG AGAIWGLC GPYDA +QGL G A+ASFVA SV FGT+CG VAGVFSITRCGV++YR +NDWVNGLI +RSW+QVIGMAGLVS FCAAADYSRT Sbjct: 1 MEEDLDGVAPCSSLAVEAMIRVGAAGAIWGLCAGPYDARQQGLRGSAKASFVAKSVGRFGTRCGFVAGVFSITRCGVQRYRGRNDWVNGLIGGAVAGAAAAAAAGTRSWSQVIGMAGLVSVFCAAADYSRT 131
BLAST of Ca_03463 vs. TrEMBL
Match: B9I9R2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_572689 PE=4 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 1.006e-42 Identity = 85/129 (65.89%), Postives = 101/129 (78.29%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADYSRT 387 ME+EL VPC+SLAV+S LRVGTAGAIWG C GPYDA ++GLTG+A+ASFVA ++ FG QCGLVAGVF+ T CG+++YRRQNDWVN LI +RSWTQV+GMAGLVSAF AADYS+T Sbjct: 1 MEEELIGAVPCSSLAVDSVLRVGTAGAIWGSCIGPYDARKRGLTGVAQASFVAKTIGKFGFQCGLVAGVFTATCCGIQRYRRQNDWVNPLIAGAVAGAAVAAGTRSWTQVVGMAGLVSAFSVAADYSKT 129
BLAST of Ca_03463 vs. TrEMBL
Match: B9SAS0_RICCO (Protein translocase, putative OS=Ricinus communis GN=RCOM_1178330 PE=4 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.607e-40 Identity = 81/129 (62.79%), Postives = 99/129 (76.74%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADYSRT 387 MEDEL +PC+S AV+S LRVGTAGAIWGLC GP++A ++GLTG ++ASFVA SV F QCGLVAGVF+ T CG+++YRR+NDWVN LI +R+WTQV+GMAGLVSAF AADYS+T Sbjct: 1 MEDELYGDIPCSSYAVDSILRVGTAGAIWGLCIGPHNARKRGLTGASQASFVAKSVGKFSFQCGLVAGVFTFTHCGIRRYRRKNDWVNALIAGAVAGAAVAAGTRNWTQVVGMAGLVSAFSVAADYSKT 129
BLAST of Ca_03463 vs. TrEMBL
Match: D7U298_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00520 PE=4 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 2.565e-38 Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADY 378 ME + + VPC+SLAV+S LRVGTAGAIWGLC PYDA ++GLTG++R +FVA SV QCGLVAGVFS TRC V+++RRQNDWVNG I R+RSW QV+GMAGLVSA AAADY Sbjct: 1 MEGDFEGFVPCSSLAVDSILRVGTAGAIWGLCMSPYDASKKGLTGLSRTAFVAKSVGKISFQCGLVAGVFSGTRCVVQRHRRQNDWVNGFIAGAVAGATVAARTRSWKQVVGMAGLVSACSAAADY 126
BLAST of Ca_03463 vs. TrEMBL
Match: D7LTA7_ARALL (Atoep16-4 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486794 PE=4 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 1.009e-34 Identity = 70/129 (54.26%), Postives = 95/129 (73.64%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADYSRT 387 ME+EL VPC+SL VES +RV TAG ++GLC GP DA + GL+G+++AS+VA S+ FG QCGLV+GVF++T CG+++YR +NDWVN L+ +R+WTQV+GMAGLVSAF A+ +RT Sbjct: 1 MEEELLSAVPCSSLTVESVIRVATAGGLYGLCAGPRDARKIGLSGVSQASYVAKSIGRFGFQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAFSVLANCTRT 129
BLAST of Ca_03463 vs. TrEMBL
Match: R0HQF1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019636mg PE=4 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 7.228e-33 Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADYSRT 387 ME+EL VPC+SLAVES LRV TAG ++G C GP DA + GL+G+++ASFVA S+ FG QCGLV+GVF++T CG+++YR ++DWVN L+ +R+W V+G AGLVSAF A+ +RT Sbjct: 1 MEEELLSAVPCSSLAVESVLRVATAGGLYGFCAGPRDARKIGLSGVSQASFVAKSIGRFGFQCGLVSGVFTMTHCGLQRYRGKSDWVNALVGGAVAGAAVAISTRNWAHVVGTAGLVSAFSVLANSTRT 129
BLAST of Ca_03463 vs. TrEMBL
Match: K4CAW0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g084550.2 PE=4 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.507e-30 Identity = 66/128 (51.56%), Postives = 86/128 (67.19%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADYSR 384 ME ++ D +PC+S+AV+S +R+GTAG IWG C+GPYDA++ GL+GI RASF+A SV G Q GL A +FS TRCG ++YRR+NDWVN L +R+W QV G GLV C A+ SR Sbjct: 1 MEVDIADDIPCSSIAVDSVIRMGTAGLIWGSCSGPYDANKLGLSGINRASFIAKSVGRLGFQWGLFAAIFSSTRCGFQRYRRRNDWVNVLTAGVVAGAAFGAGTRNWKQVAGATGLVCLLCHVAEDSR 128
BLAST of Ca_03463 vs. TrEMBL
Match: M1C823_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024046 PE=4 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 4.385e-30 Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADYSR 384 ME ++ D VPC+S+AV+S +R+GTAG IWG C+GPYDA + GL GI RASF+A SV G Q G+ A +FS TRCG ++YRR+NDWVN L +R+W QV G GLV C A+ SR Sbjct: 1 MEVDIADDVPCSSIAVDSVIRMGTAGLIWGSCSGPYDASKLGLAGIHRASFIAKSVGRLGFQWGMFAAIFSSTRCGFQRYRRRNDWVNVLTAGVVAGAAFGAGTRNWKQVAGATGLVCLLCHVAEDSR 128
BLAST of Ca_03463 vs. SwissProt
Match: OP164_ARATH (Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana GN=OEP164 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.782e-37 Identity = 72/129 (55.81%), Postives = 95/129 (73.64%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADYSRT 387 ME+EL VPC+SL VES LRV TAG ++GLC GP DA + GL+G+++ASFVA S+ FG QCGLV+GVF++T CG+++YR +NDWVN L+ +R+WTQV+GMAGLVSAF A+ +RT Sbjct: 1 MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFGFQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAFSVLANCTRT 129
BLAST of Ca_03463 vs. DB:Swiss
Match: OP164_ARATH (Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP164 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.109e-47 Identity = 82/129 (63.57%), Postives = 105/129 (81.40%), Query Frame = 1 Query: 1 MEDELDDVVPCTSLAVESTLRVGTAGAIWGLCTGPYDAHRQGLTGIARASFVANSVRVFGTQCGLVAGVFSITRCGVKKYRRQNDWVNGLIXXXXXXXXXXXRSRSWTQVIGMAGLVSAFCAAADYSRT 387 ME+EL VPC+SL VES LRV TAG ++GLC GP DA + GL+G+++ASFVA S+ FG QCGLV+GVF++T CG+++YR +NDWVN L+GGAVAGAAVA +R+WTQV+GMAGLVSAF A+ +RT Sbjct: 1 MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFGFQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAFSVLANCTRT 129 The following BLAST results are available for this feature:
BLAST of Ca_03463 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 23
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BLAST of Ca_03463 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot) Total hits: 1
BLAST of Ca_03463 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 1
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_03463_v1.0_kabuli ID=Ca_03463_v1.0_kabuli; Name=Ca_03463; organism=Cicer arietinum; type=mRNA; length=390bpback to top protein sequence of Ca_03463_v1.0_kabuli >Ca_03463_v1.0_kabuli ID=Ca_03463_v1.0_kabuli; Name=Ca_03463_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=129bpback to top mRNA from alignment at Ca4:7770136..7772009+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_03463_v1.0_kabuli ID=Ca_03463_v1.0_kabuli; Name=Ca_03463; organism=Cicer arietinum; type=mRNA; length=1874bp; location=Sequence derived from: Ca4:7770136..7772009+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca4:7770136..7772009+ >Ca_03463_v1.0_kabuli ID=Ca_03463_v1.0_kabuli; Name=Ca_03463; organism=Cicer arietinum; type=CDS; length=390bp; location=Sequence derived from: Ca4:7770136..7772009+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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