Ca_01606, Ca_01606_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_01606
Unique NameCa_01606_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length312
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:36196712..36197023 -Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR374Pisum sativum Cameor genome v1aPisum sativum
capsR381Pisum sativum Cameor genome v1aPisum sativum
capsR385Pisum sativum Cameor genome v1aPisum sativum
capsR433Pisum sativum Cameor genome v1aPisum sativum
cavuR375Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR388Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR423Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR434Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR427Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR438Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR449Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR512Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0648Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0679Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0331Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0383Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0527Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0754Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0769Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL057Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL553Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL686Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL748Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR340Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR353Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR389Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR371Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR400Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR373Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR418Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR433Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR402Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR420Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR438Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR393Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR410Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR430Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR440Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR464Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR501Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR359Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR386Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR421Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR181Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR204Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR211Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL275Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL546Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL687Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL747Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR375Cicer arietinum
cacarR393Cicer arietinum
cacarR414Cicer arietinum
cacarR424Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr08.427Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va04G066780.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg55078.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.001G029300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.2g137640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat05G0132900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_12430Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.2g171200.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr09.1450Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va07G067200.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan04g240300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
LR48_mrnaVigan07g263300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun08g032300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014645023.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.009G073600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun09g229500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004501449.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_01606-CDS1Ca_01606-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_01606_v1.0_kabuliCa_01606_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_01606 vs. TrEMBL
Match: I3NMS1_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.169e-14
Identity = 50/90 (55.56%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    4 AATTTTCSGFFN---------LRXXXXXXXNGCGGKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGNLRHDG 246
            AAT+T+C+GFFN         +R        GCG KL+ VAM FINGV  AFFASL RCSCIRIAT         A PL+ NDGNLRHDG
Sbjct:    3 AATSTSCAGFFNFRSNSDEGRVRPSSTHGSPGCG-KLDGVAMWFINGVASAFFASLERCSCIRIATEDDGDEANDA-PLIMNDGNLRHDG 90          
BLAST of Ca_01606 vs. TrEMBL
Match: C6TFZ6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.994e-14
Identity = 51/92 (55.43%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 MAATTTTCSGFFN-LRXXXXXXXNGCGGKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGNLRHDGVDSVTATTS 273
            MAATTT+ S   +  R       +   GK + VAM FINGVT AFFASLNRCSCIRIAT           PLM NDGNLRHDGV +V  T S
Sbjct:    1 MAATTTSSSSSSDESRVSSTQASSSACGKFDGVAMWFINGVTTAFFASLNRCSCIRIATEEDGDDANDL-PLMLNDGNLRHDGVVAVVGTAS 91          
BLAST of Ca_01606 vs. TrEMBL
Match: E0CNZ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08750 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.578e-14
Identity = 52/92 (56.52%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    1 MAATT-TTCSGFFNLRXXXXXXXN---------GCGGKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGNLRHDG 246
            MAATT TTC+  FNLR                 GCG KL+ VAM FINGV  AFFASL RCSCIRIAT           PL+FNDGNLRHDG
Sbjct:    1 MAATTSTTCTSLFNLRPASDEPRARTSSTHASPGCG-KLDGVAMWFINGVAAAFFASLERCSCIRIATEDDCDDANDL-PLIFNDGNLRHDG 90          
BLAST of Ca_01606 vs. TrEMBL
Match: I1JTS7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.293e-13
Identity = 54/105 (51.43%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    1 MAATTTT----CSG--FFNLRXXXXXXX--------NGCGGKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGNLRHDGVDSVTATTS 273
            MAATTT+    C G  F +LR               +   GK + VAM FINGVT AFFASLNRCSCIRIAT           PLM NDGNLRHDGV +V  T S
Sbjct:    1 MAATTTSSSSSCGGGSFLSLRSPNSDESRVSSTQASSSACGKFDGVAMWFINGVTTAFFASLNRCSCIRIATEEDGDDANDL-PLMLNDGNLRHDGVVAVVGTAS 104          
BLAST of Ca_01606 vs. TrEMBL
Match: I1K888_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.429e-12
Identity = 53/102 (51.96%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 MAATTTTCS--GFFNLRXXXXXXXNGCG---------GKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGNLRHDGVDSVTATTS 273
            MA TT++ S  GFF+LR       +            GK + VAM FINGVT AFFASLNRCSCIRIAT           PLM NDGNLR DGV  V  TTS
Sbjct:    1 MAVTTSSSSTSGFFSLRSPNSVDSSRVSSTHGSSSACGKFDGVAMWFINGVTTAFFASLNRCSCIRIATEEDGDDANDL-PLMLNDGNLRQDGV-VVACTTS 100          
BLAST of Ca_01606 vs. TrEMBL
Match: A9PCJ9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_823861 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.431e-12
Identity = 49/91 (53.85%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    1 MAATTTT-CSGFFNLRXXXXXXX----------NGCGGKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGNLRH 240
            MAATT+T CS FF+LR                  GCG KL+ VAM FINGV  AFFASL RCSCIRIAT         A PL+ NDGN+RH
Sbjct:    1 MAATTSTNCSSFFSLRSNSVEPRVRTTSSHGSSPGCG-KLDGVAMWFINGVASAFFASLERCSCIRIATEDDGDEANDA-PLILNDGNMRH 89          
BLAST of Ca_01606 vs. TrEMBL
Match: I1MXG2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.064e-11
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    7 ATTTTCS-GFFNLRXXXXXXXN--GCGGKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGNLRHDGVDSVT 261
            +T+++CS GFF+LR          GCG K + VAM FINGVT AFFASL RC CIRIAT           PL+ NDGNLRH  VD+ T
Sbjct:    5 STSSSCSNGFFSLRSTNSGESRVRGCG-KPDGVAMWFINGVTTAFFASLERC-CIRIATEEDVEDGNDDVPLILNDGNLRHRTVDTTT 90          
BLAST of Ca_01606 vs. TrEMBL
Match: K4BUJ4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g077570.1 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.338e-10
Identity = 44/87 (50.57%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 MAATTTT-CSGFFN---------LRXXXXXXXNGCGGKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGN 231
            MAATTTT C+ FFN         +R        GCG K + +AM  INGV+ AFFASL RCSCIRIAT           PLM+NDGN
Sbjct:    1 MAATTTTSCASFFNSRPSSVEPRIRSSAASTTPGCG-KFDGMAMWLINGVSAAFFASLQRCSCIRIATHEDEGEDANDLPLMYNDGN 86          
BLAST of Ca_01606 vs. TrEMBL
Match: M5XFL8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013663mg PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.282e-10
Identity = 48/101 (47.52%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    7 ATTTTCSGFFNLRXXXXXXX------------NGCGGKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGNLRHDGVDSVTATTS 273
            ATTT+ S FFNLR                   +GCG K++ VAM  IN VT  FFASL RCSCIRIAT           PL+FNDGNLR++      ATTS
Sbjct:    2 ATTTSSSNFFNLRSTTTSVHPKSRPLSSNGSSHGCG-KVDGVAMWLINSVTTCFFASLERCSCIRIATQDDGDDCNDL-PLIFNDGNLRYE----AEATTS 96          
BLAST of Ca_01606 vs. TrEMBL
Match: M1A1F5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004914 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.282e-10
Identity = 46/101 (45.54%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 MAATTTT-CSGFFN---------LRXXXXXXXNGCGGKLNWVAMSFINGVTMAFFASLNRCSCIRIATXXXXXXXXXANPLMFNDGNLRHDGVDSVTATTS 273
            MAATTTT C  FF+         +R       +GCG K + +AM  INGV+ AFFASL RCSCIRIAT           PLM+NDGN    G+ S  ++ S
Sbjct:    1 MAATTTTSCGSFFSFRPSSVEPRIRSSAASTTSGCG-KFDGMAMWLINGVSAAFFASLQRCSCIRIATHEDEGEDANDLPLMYNDGNY---GISSSNSSCS 97          
The following BLAST results are available for this feature:
BLAST of Ca_01606 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 12
Match NameE-valueIdentityDescription
I3NMS1_HEVBR1.169e-1455.56Uncharacterized protein OS=Hevea brasiliensis PE=4... [more]
C6TFZ6_SOYBN1.994e-1455.43Putative uncharacterized protein OS=Glycine max PE... [more]
E0CNZ3_VITVI7.578e-1456.52Putative uncharacterized protein OS=Vitis vinifera... [more]
I1JTS7_SOYBN1.293e-1351.43Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1K888_SOYBN1.429e-1251.96Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A9PCJ9_POPTR5.431e-1253.85Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
I1MXG2_SOYBN2.064e-1153.41Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K4BUJ4_SOLLC1.338e-1050.57Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M5XFL8_PRUPE2.282e-1047.52Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
M1A1F5_SOLTU2.282e-1045.54Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]

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BLAST of Ca_01606 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Expression

Available Analyses

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Download expression dataset for this feature
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 16..22
score: NAcoord: 59..67
score: NAcoord: 92..103
score
NoneNo IPR availableSEGsegsegcoord: 16..27
score
NoneNo IPR availableSEGsegsegcoord: 2..14
score: NAcoord: 38..46
score: NAcoord: 81..95
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_01606_v1.0_kabuli ID=Ca_01606_v1.0_kabuli; Name=Ca_01606; organism=Cicer arietinum; type=mRNA; length=312bp
ATGGCTGCCACCACCACCACCTGCAGCGGTTTCTTCAATCTCCGATCATC
CTCCTCCTCCTCCTCTAATGGTTGCGGAGGAAAGCTTAATTGGGTGGCTA
TGTCGTTCATCAACGGTGTAACCATGGCATTTTTTGCATCTTTGAACCGT
TGTTCTTGCATCCGCATAGCCACTGAAGAAGAAGACGGAGACGGAGACGA
TGCTAACCCGTTGATGTTCAACGATGGTAATCTCCGCCACGATGGTGTCG
ATTCAGTTACTGCAACCACCAGCAGGAGAAGGAACGGTAAAGGAAAGAAA
AATGGTAAGTGA
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protein sequence of Ca_01606_v1.0_kabuli

>Ca_01606_v1.0_kabuli ID=Ca_01606_v1.0_kabuli; Name=Ca_01606_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=103bp
MAATTTTCSGFFNLRSSSSSSSNGCGGKLNWVAMSFINGVTMAFFASLNR
CSCIRIATEEEDGDGDDANPLMFNDGNLRHDGVDSVTATTSRRRNGKGKK
NGK
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mRNA from alignment at Ca5:36196712..36197023-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_01606_v1.0_kabuli ID=Ca_01606_v1.0_kabuli; Name=Ca_01606; organism=Cicer arietinum; type=mRNA; length=312bp; location=Sequence derived from: Ca5:36196712..36197023- (Cicer arietinum
ATGGCTGCCACCACCACCACCTGCAGCGGTTTCTTCAATCTCCGATCATC CTCCTCCTCCTCCTCTAATGGTTGCGGAGGAAAGCTTAATTGGGTGGCTA TGTCGTTCATCAACGGTGTAACCATGGCATTTTTTGCATCTTTGAACCGT TGTTCTTGCATCCGCATAGCCACTGAAGAAGAAGACGGAGACGGAGACGA TGCTAACCCGTTGATGTTCAACGATGGTAATCTCCGCCACGATGGTGTCG ATTCAGTTACTGCAACCACCAGCAGGAGAAGGAACGGTAAAGGAAAGAAA AATGGTAAGTGA
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Coding sequence (CDS) from alignment at Ca5:36196712..36197023-

>Ca_01606_v1.0_kabuli ID=Ca_01606_v1.0_kabuli; Name=Ca_01606; organism=Cicer arietinum; type=CDS; length=312bp; location=Sequence derived from: Ca5:36196712..36197023- (Cicer arietinum
ATGGCTGCCACCACCACCACCTGCAGCGGTTTCTTCAATCTCCGATCATC
CTCCTCCTCCTCCTCTAATGGTTGCGGAGGAAAGCTTAATTGGGTGGCTA
TGTCGTTCATCAACGGTGTAACCATGGCATTTTTTGCATCTTTGAACCGT
TGTTCTTGCATCCGCATAGCCACTGAAGAAGAAGACGGAGACGGAGACGA
TGCTAACCCGTTGATGTTCAACGATGGTAATCTCCGCCACGATGGTGTCG
ATTCAGTTACTGCAACCACCAGCAGGAGAAGGAACGGTAAAGGAAAGAAA
AATGGTAAGTGA
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