Ca_01643, Ca_01643_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_01643
Unique NameCa_01643_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length339
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:35830118..35830456 +Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR381Pisum sativum Cameor genome v1aPisum sativum
capsR434Pisum sativum Cameor genome v1aPisum sativum
cavuR433Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR434Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR427Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR512Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0648Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0040Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0235Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0331Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0383Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0754Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0769Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL553Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL748Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL763Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR351Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR353Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cavrvR410Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR443Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR421Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR464Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR485Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR386Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR421Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR181Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR208Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL278Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL546Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL747Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR374Cicer arietinum
cacarR393Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g142800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg55158.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
jg20325.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat04G0059700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_09839Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.001G037600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg35548.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr08.349Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_30662Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat5g036120.1Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_13834Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_13479Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va04G066050.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.009G079000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va01G094370.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat05G0125700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun08g039900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
LR48_mrnaVigan04g234600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_014644866.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-KK1_009524Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun09g223800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004501400.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_004507895.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_004498812.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_01643-CDS1Ca_01643-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_01643_v1.0_kabuliCa_01643_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_01643 vs. TrEMBL
Match: G7J8B4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g104640 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.028e-36
Identity = 78/112 (69.64%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 MEDFQRSRSYANGQMMQTENYYGPPKPYDLRSYSSSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            MEDFQRS+SYANGQMMQ E+YYGP KPYDLRSYSSSY Q    P D                     +DPELQRKKRVASYKMYSVEG+VKGSFRKSFRWLKNKYSQVV+GW
Sbjct:    1 MEDFQRSKSYANGQMMQIESYYGPSKPYDLRSYSSSYVQQT--PKDLKLKKGKSFSSGSSFSKSLSLSDPELQRKKRVASYKMYSVEGKVKGSFRKSFRWLKNKYSQVVYGW 110          
BLAST of Ca_01643 vs. TrEMBL
Match: I1JTY4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.199e-35
Identity = 78/115 (67.83%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 MEDFQRSRSYANGQMMQTENYYGPPKPYDL--RSYSSSYAQTQMGP-NDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            ME+FQRSRSYANGQMMQ E+YYG P+PYDL  R+YS+SYAQTQ+GP  D                     ADPELQRKKRVASYKMYSVEG++KGSFRKSFRWLKNKYS VV+GW
Sbjct:    1 MEEFQRSRSYANGQMMQIESYYGAPRPYDLSLRTYSASYAQTQIGPPRDLKLKKGKSISAGSSFSKSWSFADPELQRKKRVASYKMYSVEGKIKGSFRKSFRWLKNKYSHVVYGW 115          
BLAST of Ca_01643 vs. TrEMBL
Match: C6SX84_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.045e-35
Identity = 76/115 (66.09%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 MEDFQRSRSYANGQMMQTENYYGPPKPYDL--RSYSSSYAQTQMGPN-DXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            ME+FQRSRSYANGQMMQ E+YYG P+PYDL  R+YS+SYAQT MGPN D                     ADPE++RKKR+ASYKMYSVEG++KGSFRKSFRWLKNKYS VV+GW
Sbjct:    1 MEEFQRSRSYANGQMMQIESYYGAPRPYDLSLRTYSASYAQTHMGPNRDLKLKKGKSISAGSSFSKSWSLADPEIRRKKRIASYKMYSVEGKIKGSFRKSFRWLKNKYSHVVYGW 115          
BLAST of Ca_01643 vs. TrEMBL
Match: C6T345_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.731e-34
Identity = 76/115 (66.09%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 MEDFQRSRSYANGQMMQTENYYGPPKPYDL--RSYSSSYAQTQMGP-NDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            ME+FQRSRSYANGQMMQ E+YYG P+PYDL  R+YS+SYAQTQ+GP  D                     ADPEL+RKKRVASYKMYSVEG++KGSF KSFRWLKNKYS VV+GW
Sbjct:    1 MEEFQRSRSYANGQMMQIESYYGAPRPYDLSLRTYSASYAQTQIGPPRDLKLKKGKSISAGSSFSKSWSFADPELRRKKRVASYKMYSVEGKIKGSFMKSFRWLKNKYSHVVYGW 115          
BLAST of Ca_01643 vs. TrEMBL
Match: I3T6I1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.050e-31
Identity = 79/121 (65.29%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 MEDFQRSRSYANGQMMQTENYY--GPPKPYDL--RSYSS-SYAQT-QMG---PNDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            MED QRSRSYANGQ+MQ +++Y   PP+PYDL  RSYSS SYAQT QMG   PND                     ADPELQRKKRVASYKMYSVEG++KGSFRKSFRWLKNKYS VV+GW
Sbjct:    1 MEDLQRSRSYANGQVMQMDSFYVGAPPRPYDLSLRSYSSHSYAQTHQMGYNPPNDFKLKKGKSFSAGSSLSKSLSLADPELQRKKRVASYKMYSVEGKIKGSFRKSFRWLKNKYSHVVYGW 121          
BLAST of Ca_01643 vs. TrEMBL
Match: I1M944_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.677e-29
Identity = 73/126 (57.94%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 MEDFQ--RSRSYANGQMMQTENYYG----PPKPYDLRSYSSSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXX--------ADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            MEDF   RSRS+ NGQMM+ E YYG    PP+P DLRSYS SYAQ QMGPN+                              DPE+QRKKRVASYKMYSVEG+VKGSFRKSFRWLK++Y QVV+GW
Sbjct:    1 MEDFNYNRSRSHGNGQMMKMERYYGGATPPPRPCDLRSYSVSYAQAQMGPNNYNNKDLKMMKKGKSMSSRATSISKSWSFATDPEIQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDRYWQVVYGW 126          
BLAST of Ca_01643 vs. TrEMBL
Match: M5XFG9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013495mg PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.419e-28
Identity = 70/118 (59.32%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 MEDFQRSRSYANGQ-MMQTENYYGPPKP---YDLRSYSSSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXXA--DPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            MED+ RS+SY  G   MQ ENYYGPP+P   Y+LRSYS SYAQTQM  N+                        DPELQRKKRVASYKMYSVEG++KGSFRKSFRWLK+K +QVV+GW
Sbjct:    1 MEDYSRSKSYGTGSGTMQMENYYGPPRPPTSYELRSYSVSYAQTQMANNNNRDFKLKKGKSTSGSSSKSNWGLMDPELQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKCTQVVYGW 118          
BLAST of Ca_01643 vs. TrEMBL
Match: B9RQS2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0706040 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.272e-25
Identity = 66/129 (51.16%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 MEDFQRSRSYA----NGQMMQTENYYGPPKP-------YDLRSYSSSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXXA------DPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            MED+ RSRSY+     G  MQ E+Y+GP  P       Y+LRSYS+SYAQ+QM  N+                     +      DPE QRKKRVASYKMYSVEG+VKGSFR+SFRWLK++Y+QVV+GW
Sbjct:    1 MEDYNRSRSYSYSSYGGSNMQIESYHGPQIPPPPATTSYELRSYSASYAQSQMANNNFTTNTRDFKLKTGKNASGSSSSKSWSFTDPEFQRKKRVASYKMYSVEGKVKGSFRRSFRWLKDRYTQVVYGW 129          
BLAST of Ca_01643 vs. TrEMBL
Match: B9HDC6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_763226 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.796e-23
Identity = 63/129 (48.84%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 MEDFQRSRSYA---NGQMMQTENYYGPPKP----YDLRSYSSSYAQTQM----------GPNDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            MED+ RS+SY+      MMQ E+Y GP +P    Y+LRSYS+SYAQTQ+          G N                       DPE QRKKRVASYKMYSVEG+VKG+FRKSFRW+K++ +QV++GW
Sbjct:    1 MEDYNRSKSYSYSHGNDMMQMESYNGPQRPPTSSYELRSYSTSYAQTQVANGNYNTNNFGNNRDFKAKKGKGYTGSSSSKSWSFDDPEFQRKKRVASYKMYSVEGKVKGTFRKSFRWIKDRCTQVMYGW 129          
BLAST of Ca_01643 vs. TrEMBL
Match: C6T164_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.520e-22
Identity = 68/128 (53.12%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 MEDFQ---RSRSYAN-GQMMQT-ENYYG-----PPKPYDLRSYS-SSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXXA-----DPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336
            MEDF    +SRS+ N GQMMQ  E YYG     P +PYDLRSYS SSY Q     N+                     +     DPE+QRKKRVASYKMYSVEG+VKGSFRKSFRW+K++Y QVV+GW
Sbjct:    1 MEDFNNYNKSRSHGNNGQMMQQMERYYGGAPPQPTRPYDLRSYSVSSYTQAPNNYNNKDLKMMKKGKSMSSRTSSISKSWSFVTDPEIQRKKRVASYKMYSVEGKVKGSFRKSFRWVKDRYCQVVYGW 128          
The following BLAST results are available for this feature:
BLAST of Ca_01643 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7J8B4_MEDTR7.028e-3669.64Uncharacterized protein OS=Medicago truncatula GN=... [more]
I1JTY4_SOYBN1.199e-3567.83Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6SX84_SOYBN2.045e-3566.09Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6T345_SOYBN1.731e-3466.09Putative uncharacterized protein OS=Glycine max PE... [more]
I3T6I1_LOTJA1.050e-3165.29Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
I1M944_SOYBN1.677e-2957.94Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
M5XFG9_PRUPE1.419e-2859.32Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9RQS2_RICCO3.272e-2551.16Putative uncharacterized protein OS=Ricinus commun... [more]
B9HDC6_POPTR1.796e-2348.84Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C6T164_SOYBN1.520e-2253.13Putative uncharacterized protein OS=Glycine max PE... [more]

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BLAST of Ca_01643 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Expression

Available Analyses

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Download expression dataset for this feature
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 66..111
score: 2.3
NoneNo IPR availableSEGsegsegcoord: 47..67
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_01643_v1.0_kabuli ID=Ca_01643_v1.0_kabuli; Name=Ca_01643; organism=Cicer arietinum; type=mRNA; length=339bp
ATGGAAGATTTTCAGAGATCAAGGTCTTATGCAAATGGCCAAATGATGCA
GACAGAAAACTACTATGGACCACCTAAACCTTATGATCTCAGAAGCTATA
GTTCTTCCTATGCACAAACTCAAATGGGTCCTAATGATTTGAAGTTGAAG
AAAGGTAAAAGCTTTTCATCTGGGTCTTCTTTCTCCAAAACTTTGAGCTT
TGCTGATCCTGAACTTCAGAGGAAGAAAAGGGTTGCTAGCTATAAAATGT
ATTCTGTTGAAGGTAGAGTCAAAGGGTCTTTTAGAAAGAGCTTTAGATGG
CTTAAGAATAAGTATTCACAAGTGGTTCATGGTTGGTAG
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protein sequence of Ca_01643_v1.0_kabuli

>Ca_01643_v1.0_kabuli ID=Ca_01643_v1.0_kabuli; Name=Ca_01643_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=112bp
MEDFQRSRSYANGQMMQTENYYGPPKPYDLRSYSSSYAQTQMGPNDLKLK
KGKSFSSGSSFSKTLSFADPELQRKKRVASYKMYSVEGRVKGSFRKSFRW
LKNKYSQVVHGW
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mRNA from alignment at Ca5:35830118..35830456+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_01643_v1.0_kabuli ID=Ca_01643_v1.0_kabuli; Name=Ca_01643; organism=Cicer arietinum; type=mRNA; length=339bp; location=Sequence derived from: Ca5:35830118..35830456+ (Cicer arietinum
ATGGAAGATTTTCAGAGATCAAGGTCTTATGCAAATGGCCAAATGATGCA GACAGAAAACTACTATGGACCACCTAAACCTTATGATCTCAGAAGCTATA GTTCTTCCTATGCACAAACTCAAATGGGTCCTAATGATTTGAAGTTGAAG AAAGGTAAAAGCTTTTCATCTGGGTCTTCTTTCTCCAAAACTTTGAGCTT TGCTGATCCTGAACTTCAGAGGAAGAAAAGGGTTGCTAGCTATAAAATGT ATTCTGTTGAAGGTAGAGTCAAAGGGTCTTTTAGAAAGAGCTTTAGATGG CTTAAGAATAAGTATTCACAAGTGGTTCATGGTTGGTAG
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Coding sequence (CDS) from alignment at Ca5:35830118..35830456+

>Ca_01643_v1.0_kabuli ID=Ca_01643_v1.0_kabuli; Name=Ca_01643; organism=Cicer arietinum; type=CDS; length=339bp; location=Sequence derived from: Ca5:35830118..35830456+ (Cicer arietinum
ATGGAAGATTTTCAGAGATCAAGGTCTTATGCAAATGGCCAAATGATGCA
GACAGAAAACTACTATGGACCACCTAAACCTTATGATCTCAGAAGCTATA
GTTCTTCCTATGCACAAACTCAAATGGGTCCTAATGATTTGAAGTTGAAG
AAAGGTAAAAGCTTTTCATCTGGGTCTTCTTTCTCCAAAACTTTGAGCTT
TGCTGATCCTGAACTTCAGAGGAAGAAAAGGGTTGCTAGCTATAAAATGT
ATTCTGTTGAAGGTAGAGTCAAAGGGTCTTTTAGAAAGAGCTTTAGATGG
CTTAAGAATAAGTATTCACAAGTGGTTCATGGTTGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511