Ca_01643, Ca_01643_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_01643 vs. TrEMBL
Match: G7J8B4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g104640 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.028e-36 Identity = 78/112 (69.64%), Postives = 83/112 (74.11%), Query Frame = 1 Query: 1 MEDFQRSRSYANGQMMQTENYYGPPKPYDLRSYSSSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 MEDFQRS+SYANGQMMQ E+YYGP KPYDLRSYSSSY Q P D +DPELQRKKRVASYKMYSVEG+VKGSFRKSFRWLKNKYSQVV+GW Sbjct: 1 MEDFQRSKSYANGQMMQIESYYGPSKPYDLRSYSSSYVQQT--PKDLKLKKGKSFSSGSSFSKSLSLSDPELQRKKRVASYKMYSVEGKVKGSFRKSFRWLKNKYSQVVYGW 110
BLAST of Ca_01643 vs. TrEMBL
Match: I1JTY4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.199e-35 Identity = 78/115 (67.83%), Postives = 87/115 (75.65%), Query Frame = 1 Query: 1 MEDFQRSRSYANGQMMQTENYYGPPKPYDL--RSYSSSYAQTQMGP-NDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 ME+FQRSRSYANGQMMQ E+YYG P+PYDL R+YS+SYAQTQ+GP D ADPELQRKKRVASYKMYSVEG++KGSFRKSFRWLKNKYS VV+GW Sbjct: 1 MEEFQRSRSYANGQMMQIESYYGAPRPYDLSLRTYSASYAQTQIGPPRDLKLKKGKSISAGSSFSKSWSFADPELQRKKRVASYKMYSVEGKIKGSFRKSFRWLKNKYSHVVYGW 115
BLAST of Ca_01643 vs. TrEMBL
Match: C6SX84_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 2.045e-35 Identity = 76/115 (66.09%), Postives = 87/115 (75.65%), Query Frame = 1 Query: 1 MEDFQRSRSYANGQMMQTENYYGPPKPYDL--RSYSSSYAQTQMGPN-DXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 ME+FQRSRSYANGQMMQ E+YYG P+PYDL R+YS+SYAQT MGPN D ADPE++RKKR+ASYKMYSVEG++KGSFRKSFRWLKNKYS VV+GW Sbjct: 1 MEEFQRSRSYANGQMMQIESYYGAPRPYDLSLRTYSASYAQTHMGPNRDLKLKKGKSISAGSSFSKSWSLADPEIRRKKRIASYKMYSVEGKIKGSFRKSFRWLKNKYSHVVYGW 115
BLAST of Ca_01643 vs. TrEMBL
Match: C6T345_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.731e-34 Identity = 76/115 (66.09%), Postives = 86/115 (74.78%), Query Frame = 1 Query: 1 MEDFQRSRSYANGQMMQTENYYGPPKPYDL--RSYSSSYAQTQMGP-NDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 ME+FQRSRSYANGQMMQ E+YYG P+PYDL R+YS+SYAQTQ+GP D ADPEL+RKKRVASYKMYSVEG++KGSF KSFRWLKNKYS VV+GW Sbjct: 1 MEEFQRSRSYANGQMMQIESYYGAPRPYDLSLRTYSASYAQTQIGPPRDLKLKKGKSISAGSSFSKSWSFADPELRRKKRVASYKMYSVEGKIKGSFMKSFRWLKNKYSHVVYGW 115
BLAST of Ca_01643 vs. TrEMBL
Match: I3T6I1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.050e-31 Identity = 79/121 (65.29%), Postives = 87/121 (71.90%), Query Frame = 1 Query: 1 MEDFQRSRSYANGQMMQTENYY--GPPKPYDL--RSYSS-SYAQT-QMG---PNDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 MED QRSRSYANGQ+MQ +++Y PP+PYDL RSYSS SYAQT QMG PND ADPELQRKKRVASYKMYSVEG++KGSFRKSFRWLKNKYS VV+GW Sbjct: 1 MEDLQRSRSYANGQVMQMDSFYVGAPPRPYDLSLRSYSSHSYAQTHQMGYNPPNDFKLKKGKSFSAGSSLSKSLSLADPELQRKKRVASYKMYSVEGKIKGSFRKSFRWLKNKYSHVVYGW 121
BLAST of Ca_01643 vs. TrEMBL
Match: I1M944_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.677e-29 Identity = 73/126 (57.94%), Postives = 82/126 (65.08%), Query Frame = 1 Query: 1 MEDFQ--RSRSYANGQMMQTENYYG----PPKPYDLRSYSSSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXX--------ADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 MEDF RSRS+ NGQMM+ E YYG PP+P DLRSYS SYAQ QMGPN+ DPE+QRKKRVASYKMYSVEG+VKGSFRKSFRWLK++Y QVV+GW Sbjct: 1 MEDFNYNRSRSHGNGQMMKMERYYGGATPPPRPCDLRSYSVSYAQAQMGPNNYNNKDLKMMKKGKSMSSRATSISKSWSFATDPEIQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDRYWQVVYGW 126
BLAST of Ca_01643 vs. TrEMBL
Match: M5XFG9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013495mg PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.419e-28 Identity = 70/118 (59.32%), Postives = 80/118 (67.80%), Query Frame = 1 Query: 1 MEDFQRSRSYANGQ-MMQTENYYGPPKP---YDLRSYSSSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXXA--DPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 MED+ RS+SY G MQ ENYYGPP+P Y+LRSYS SYAQTQM N+ DPELQRKKRVASYKMYSVEG++KGSFRKSFRWLK+K +QVV+GW Sbjct: 1 MEDYSRSKSYGTGSGTMQMENYYGPPRPPTSYELRSYSVSYAQTQMANNNNRDFKLKKGKSTSGSSSKSNWGLMDPELQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKCTQVVYGW 118
BLAST of Ca_01643 vs. TrEMBL
Match: B9RQS2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0706040 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 3.272e-25 Identity = 66/129 (51.16%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 1 MEDFQRSRSYA----NGQMMQTENYYGPPKP-------YDLRSYSSSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXXA------DPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 MED+ RSRSY+ G MQ E+Y+GP P Y+LRSYS+SYAQ+QM N+ + DPE QRKKRVASYKMYSVEG+VKGSFR+SFRWLK++Y+QVV+GW Sbjct: 1 MEDYNRSRSYSYSSYGGSNMQIESYHGPQIPPPPATTSYELRSYSASYAQSQMANNNFTTNTRDFKLKTGKNASGSSSSKSWSFTDPEFQRKKRVASYKMYSVEGKVKGSFRRSFRWLKDRYTQVVYGW 129
BLAST of Ca_01643 vs. TrEMBL
Match: B9HDC6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_763226 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.796e-23 Identity = 63/129 (48.84%), Postives = 79/129 (61.24%), Query Frame = 1 Query: 1 MEDFQRSRSYA---NGQMMQTENYYGPPKP----YDLRSYSSSYAQTQM----------GPNDXXXXXXXXXXXXXXXXXXXXXADPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 MED+ RS+SY+ MMQ E+Y GP +P Y+LRSYS+SYAQTQ+ G N DPE QRKKRVASYKMYSVEG+VKG+FRKSFRW+K++ +QV++GW Sbjct: 1 MEDYNRSKSYSYSHGNDMMQMESYNGPQRPPTSSYELRSYSTSYAQTQVANGNYNTNNFGNNRDFKAKKGKGYTGSSSSKSWSFDDPEFQRKKRVASYKMYSVEGKVKGTFRKSFRWIKDRCTQVMYGW 129
BLAST of Ca_01643 vs. TrEMBL
Match: C6T164_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.520e-22 Identity = 68/128 (53.12%), Postives = 79/128 (61.72%), Query Frame = 1 Query: 1 MEDFQ---RSRSYAN-GQMMQT-ENYYG-----PPKPYDLRSYS-SSYAQTQMGPNDXXXXXXXXXXXXXXXXXXXXXA-----DPELQRKKRVASYKMYSVEGRVKGSFRKSFRWLKNKYSQVVHGW 336 MEDF +SRS+ N GQMMQ E YYG P +PYDLRSYS SSY Q N+ + DPE+QRKKRVASYKMYSVEG+VKGSFRKSFRW+K++Y QVV+GW Sbjct: 1 MEDFNNYNKSRSHGNNGQMMQQMERYYGGAPPQPTRPYDLRSYSVSSYTQAPNNYNNKDLKMMKKGKSMSSRTSSISKSWSFVTDPEIQRKKRVASYKMYSVEGKVKGSFRKSFRWVKDRYCQVVYGW 128 The following BLAST results are available for this feature:
BLAST of Ca_01643 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_01643 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_01643_v1.0_kabuli ID=Ca_01643_v1.0_kabuli; Name=Ca_01643; organism=Cicer arietinum; type=mRNA; length=339bpback to top protein sequence of Ca_01643_v1.0_kabuli >Ca_01643_v1.0_kabuli ID=Ca_01643_v1.0_kabuli; Name=Ca_01643_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=112bpback to top mRNA from alignment at Ca5:35830118..35830456+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_01643_v1.0_kabuli ID=Ca_01643_v1.0_kabuli; Name=Ca_01643; organism=Cicer arietinum; type=mRNA; length=339bp; location=Sequence derived from: Ca5:35830118..35830456+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca5:35830118..35830456+ >Ca_01643_v1.0_kabuli ID=Ca_01643_v1.0_kabuli; Name=Ca_01643; organism=Cicer arietinum; type=CDS; length=339bp; location=Sequence derived from: Ca5:35830118..35830456+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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