Ca_04883, Ca_04883_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_04883
Unique NameCa_04883_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length327
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:31787793..31788119 -Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR368Pisum sativum Cameor genome v1aPisum sativum
capsR381Pisum sativum Cameor genome v1aPisum sativum
capsR384Pisum sativum Cameor genome v1aPisum sativum
capsR428Pisum sativum Cameor genome v1aPisum sativum
cavuR407Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR423Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR513Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0704Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0709Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0339Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0392Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0479Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0531Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0763Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1063Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1137Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL041Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL201Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL749Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR353Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR385Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR365Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR401Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR370Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR421Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR403Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR424Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR433Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR419Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR432Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR408Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR438Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR452Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR496Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR399Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR413Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR186Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL264Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL560Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL689Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL761Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR377Cicer arietinum
cacarR393Cicer arietinum
cacarR427Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Psat05G0042200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Tiffany.R1.3g193480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_12343Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.2g167600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat06G0006900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.009G017800.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va07G071280.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan07g278000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg55965.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun09g254200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_19998Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_17676Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014645285.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.2g207160.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg35039.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat6g002280.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr09.1235Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.3g238280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan09g032500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun08g006400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004499228.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_004500877.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_04883-CDS1Ca_04883-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_04883_v1.0_kabuliCa_04883_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_04883 vs. TrEMBL
Match: I1MC30_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.079e-35
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKATYAFNRDH----PHNHVMMCKGGICWHGVAVRSPASELRFRLP 303
            MA+SD V+SNLT +YVAVI C+KAYGFLCGRSF+G +V+++ST  VALIL+ TLTWD+SRKATYAF  D     PH+    CKGGICWHGVAVRSPAS++RFRLP
Sbjct:    1 MAVSDAVMSNLTVLYVAVIACIKAYGFLCGRSFSGWFVLVVSTAAVALILVATLTWDVSRKATYAFATDQPPPPPHHTHEACKGGICWHGVAVRSPASQVRFRLP 105          
BLAST of Ca_04883 vs. TrEMBL
Match: B9R8A8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1598260 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.049e-35
Identity = 75/106 (70.75%), Postives = 91/106 (85.85%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKATYAFNRDHPHNHVM-MCKGGICWHGVAVRSPASELRFRLP-HQQ 312
            MA+SD V+ NLTTIYVAVI  +KAYG +CGRSF+G +V+++ST+VV LIL+ +LTWD+SRKATYA +RDH H HV  MCKGGICWHGVAVRSPAS++RFRLP H Q
Sbjct:    1 MAVSDAVIGNLTTIYVAVIAGIKAYGLVCGRSFSGGFVLILSTSVVGLILIGSLTWDVSRKATYAISRDH-HIHVHEMCKGGICWHGVAVRSPASQVRFRLPQHHQ 105          
BLAST of Ca_04883 vs. TrEMBL
Match: B9H4Z7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_761508 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.141e-33
Identity = 70/101 (69.31%), Postives = 84/101 (83.17%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKATYAFNRDHPHNHVMMCKGGICWHGVAVRSPASELRFRLP 303
            MA+SD V+ NLTTIYVAVI  +K YG +CGRSF+G +V+++ST VV LIL  TL WD+SRKATYA +RDH + H  MCKGGICWHGVAVRSPAS++RFRLP
Sbjct:    1 MALSDAVIGNLTTIYVAVIAGIKVYGLVCGRSFSGGFVLILSTIVVGLILTGTLAWDISRKATYAISRDHVNVH-EMCKGGICWHGVAVRSPASQVRFRLP 100          
BLAST of Ca_04883 vs. TrEMBL
Match: M5XMG6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013645mg PE=4 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.152e-32
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKATYAFNRDHPHNHVMMCKGGICWHGVAVRSPASELRFRLPHQ 309
            MA+SD V  NLTTIYVAVIT +KAY  + G+SF+G +V+++ST VV LIL+ TLTWD+SRKATYA  RDH  +   MCKGGICWHGVAV+S ASE+R RLPHQ
Sbjct:    1 MAVSDAVAGNLTTIYVAVITGIKAYAVVFGQSFSGGFVLIVSTIVVCLILIATLTWDVSRKATYAIRRDHSVHVHDMCKGGICWHGVAVQSSASEVRLRLPHQ 103          
BLAST of Ca_04883 vs. TrEMBL
Match: I1MY39_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.152e-32
Identity = 71/109 (65.14%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKATYAFNR--------DHPHNHVMMCKGGICWHGVAVRSPASELRFRLP 303
            MA+SD VVSNLT +YVA+I  +KAYGFLCGRSF+G +V++ ST  VALIL+ TLTWD+SRKATYAF            PH+    CKGGICWHGVAVRSPAS++RFRLP
Sbjct:    1 MAVSDAVVSNLTLLYVALILSIKAYGFLCGRSFSGCFVLVASTAAVALILVATLTWDVSRKATYAFAAVQPPPPPPPPPHHTHETCKGGICWHGVAVRSPASQVRFRLP 109          
BLAST of Ca_04883 vs. TrEMBL
Match: F6H1L7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14520 PE=4 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.921e-31
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKATYAFNRDHPHNHVMMCKGGICWHGVAVRSPASELRFRLPHQ 309
            MAISD VV+NLTTIY+  I  +KAYG   GRSF+G +V++ ST  V LIL+ TL WD+SRKATYA +RDH H    MC+GGICWHGVAV+S AS++RFRLP Q
Sbjct:    1 MAISDAVVANLTTIYLVAIAAIKAYGLATGRSFSGGFVLVTSTAAVVLILIGTLAWDVSRKATYALSRDHVHE---MCRGGICWHGVAVKSSASQVRFRLPQQ 100          
BLAST of Ca_04883 vs. TrEMBL
Match: I1K7J1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.859e-30
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKATYAFNRDHPHNHVMMCKGGICWHGVAVRSPASELRFRLP 303
            MAISD V  N +TI+V ++ C +AYGF  GR F+G YVV++ST  V L L+ TLTWD+SRKAT AF+RDH  +   +CKGGICWHGVA RSPAS++R RLP
Sbjct:    1 MAISDAVARNFSTIFVGLMACFEAYGFASGRRFSGGYVVIVSTAAVILFLVATLTWDVSRKATCAFHRDHADSQEDVCKGGICWHGVAPRSPASQVRVRLP 101          
BLAST of Ca_04883 vs. TrEMBL
Match: K4BUP3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g078060.1 PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.462e-28
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKAT---------YAFNRDHPHNHV-MMCKGGICWHGVAVRSPASELRFRLP 303
            MAISDTVV NLTT+Y+ VI  MKAYG + GRS+ G +V+++ST VV  +L+ +LTWD+SRK T            NR+ P +H   +C+GGICWHGVAVRSPAS+ RFRLP
Sbjct:    1 MAISDTVVGNLTTLYLLVIAAMKAYGLMTGRSYGGVFVLIVSTAVVGTVLILSLTWDVSRKVTRCALTRDRHLTLNRNQPRHHSDELCRGGICWHGVAVRSPASQFRFRLP 111          
BLAST of Ca_04883 vs. TrEMBL
Match: M1BXU8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021511 PE=4 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.484e-28
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKAT-YAF--------NRDHPHNHV-MMCKGGICWHGVAVRSPASELRFRLP 303
            MAISDTVV NLTT+Y+ VI  MKAYG + GRS+ G +V+++ST VV  +L+ +LTWD+SRK T  AF        NR+ P +H   +C+GGICWHGVAVRSPAS+ RFRLP
Sbjct:    1 MAISDTVVGNLTTLYLLVIAAMKAYGLMTGRSYGGVFVLIVSTAVVGSVLILSLTWDVSRKVTRCAFTRDRYLTQNRNQPRHHSDELCRGGICWHGVAVRSPASQFRFRLP 111          
BLAST of Ca_04883 vs. TrEMBL
Match: Q9LQT3_ARATH (At1g75810 OS=Arabidopsis thaliana GN=AT1G75810 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.304e-26
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALILMTTLTWDLSRKATYAFNR-------------DHPHNHVMMCKGGICWHGVAVRSPASELRFRLP 303
            MA+SD V+ NL TIYVAVI  +KAYG + GRSF+  +VV++S T V ++L  TL WD+SR+A  A +R              H H+   +CKGGICWHGVAVRSPAS++RFRLP
Sbjct:    4 MALSDAVLGNLATIYVAVIIAIKAYGLITGRSFSAGFVVVVSITAVGVLLAVTLAWDVSRRAAEAVSRYNRVGGEEDLSHHRHHHDGGAICKGGICWHGVAVRSPASQVRFRLP 117          
The following BLAST results are available for this feature:
BLAST of Ca_04883 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 18
Match NameE-valueIdentityDescription
I1MC30_SOYBN2.079e-3569.52Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
B9R8A8_RICCO6.049e-3570.75Putative uncharacterized protein OS=Ricinus commun... [more]
B9H4Z7_POPTR1.141e-3369.31Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
M5XMG6_PRUPE2.152e-3266.99Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
I1MY39_SOYBN2.152e-3265.14Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
F6H1L7_VITVI6.921e-3164.08Putative uncharacterized protein OS=Vitis vinifera... [more]
I1K7J1_SOYBN5.859e-3061.39Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K4BUP3_SOLLC2.462e-2856.76Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M1BXU8_SOLTU5.484e-2858.56Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
Q9LQT3_ARATH2.304e-2653.51At1g75810 OS=Arabidopsis thaliana GN=AT1G75810 PE=... [more]

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BLAST of Ca_04883 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_04883_v1.0_kabuli ID=Ca_04883_v1.0_kabuli; Name=Ca_04883; organism=Cicer arietinum; type=mRNA; length=327bp
ATGGCTATTTCTGATACAGTAGTGAGTAACCTTACTACAATCTACGTGGC
GGTGATCACCTGTATGAAGGCCTACGGTTTTCTCTGTGGTCGAAGCTTTA
ACGGCGCATATGTTGTCATGATATCAACCACAGTGGTGGCTTTGATCTTA
ATGACAACGCTGACGTGGGACTTGTCTCGTAAAGCCACGTATGCTTTCAA
TCGTGACCATCCTCACAATCATGTCATGATGTGTAAGGGTGGTATATGTT
GGCATGGTGTGGCGGTCCGATCACCGGCATCTGAGCTCCGTTTCAGACTT
CCTCACCAACAGAACGCCGCTTTCTAA
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protein sequence of Ca_04883_v1.0_kabuli

>Ca_04883_v1.0_kabuli ID=Ca_04883_v1.0_kabuli; Name=Ca_04883_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=108bp
MAISDTVVSNLTTIYVAVITCMKAYGFLCGRSFNGAYVVMISTTVVALIL
MTTLTWDLSRKATYAFNRDHPHNHVMMCKGGICWHGVAVRSPASELRFRL
PHQQNAAF
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mRNA from alignment at Ca5:31787793..31788119-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_04883_v1.0_kabuli ID=Ca_04883_v1.0_kabuli; Name=Ca_04883; organism=Cicer arietinum; type=mRNA; length=327bp; location=Sequence derived from: Ca5:31787793..31788119- (Cicer arietinum
ATGGCTATTTCTGATACAGTAGTGAGTAACCTTACTACAATCTACGTGGC GGTGATCACCTGTATGAAGGCCTACGGTTTTCTCTGTGGTCGAAGCTTTA ACGGCGCATATGTTGTCATGATATCAACCACAGTGGTGGCTTTGATCTTA ATGACAACGCTGACGTGGGACTTGTCTCGTAAAGCCACGTATGCTTTCAA TCGTGACCATCCTCACAATCATGTCATGATGTGTAAGGGTGGTATATGTT GGCATGGTGTGGCGGTCCGATCACCGGCATCTGAGCTCCGTTTCAGACTT CCTCACCAACAGAACGCCGCTTTCTAA
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Coding sequence (CDS) from alignment at Ca5:31787793..31788119-

>Ca_04883_v1.0_kabuli ID=Ca_04883_v1.0_kabuli; Name=Ca_04883; organism=Cicer arietinum; type=CDS; length=327bp; location=Sequence derived from: Ca5:31787793..31788119- (Cicer arietinum
ATGGCTATTTCTGATACAGTAGTGAGTAACCTTACTACAATCTACGTGGC
GGTGATCACCTGTATGAAGGCCTACGGTTTTCTCTGTGGTCGAAGCTTTA
ACGGCGCATATGTTGTCATGATATCAACCACAGTGGTGGCTTTGATCTTA
ATGACAACGCTGACGTGGGACTTGTCTCGTAAAGCCACGTATGCTTTCAA
TCGTGACCATCCTCACAATCATGTCATGATGTGTAAGGGTGGTATATGTT
GGCATGGTGTGGCGGTCCGATCACCGGCATCTGAGCTCCGTTTCAGACTT
CCTCACCAACAGAACGCCGCTTTCTAA
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