Ca_03396, Ca_03396_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_03396 vs. TrEMBL
Match: G7JKF1_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_4g132690 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 3.775e-33 Identity = 99/224 (44.20%), Postives = 111/224 (49.55%), Query Frame = 1 Query: 16 SPEFEFCMLHSS---KPNILPADQXXXXXXXXXXXXXSTQNKXXXXXXXXXXXXXXXXXXXXXXX---RWKDIFIKKKKTNNAEXXXXXXXXXXXXXGVSTSPELNINIWPFSRSSSAGNSVIRPKS-----VTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGV---KKTEAMYLKQRRSRVGSTGCGGG-----------IPMC 603 SPEFEF ML + +PNI+PADQ STQNK RWK+IF+KK + S ELNINIWPFSRS S+GNSV RPKS VTR+VNSAPCSRSNSAGDSKSRK PSSP GVHL RSSP+WQ R K++ RRSR ST GGG +PMC Sbjct: 27 SPEFEFWMLRNPSFPQPNIIPADQLFLNGVILPLHLLSTQNKHDPVPEPNSSPPITDGLTITTTTTSKRWKNIFMKKNNNTEEKVKKKEKRVGNSGGAGGGSAELNINIWPFSRSRSSGNSVSRPKSSTGAPVTRKVNSAPCSRSNSAGDSKSRKLPSSPARVGVHLGRSSPVWQVRHAAKNTVNPDKSKRETTTSRRSRFTSTTGGGGGSGKAKVLNLSVPMC 250
BLAST of Ca_03396 vs. TrEMBL
Match: I1KNH3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.028e-30 Identity = 106/268 (39.55%), Postives = 125/268 (46.64%), Query Frame = 1 Query: 16 SPEFEFCMLHSS---KPNILPADQXXXXXXXXXXXXXSTQNKXXXXXXXXXXXXXXXXXXXXXXXRWKDIFIKKKKTNNAEXXXXXXXXXXXXXGVSTSPELNINIWPFSRSSSAGNSVIRPKS---VTRRVNSAPCSRSNSAGDSKSRKWPSS---PGVHLARSSPIWQGRRGGSGVKK------TEAMYLKQRRSRVGSTGCGG------GIPM---------CRSEVKS--------------TVSGK---LRTFFTKKTVLTSH 678 SPEFEF M+ + +PNIL ADQ + + RWKDIF K K N GV+TS ELNINIWPFSRS SAGN+ RPK TR+ NSAPCSRSNSAG+SKSRKWPSS PGVHL RSSP+WQ RR + V + ++ R VG +G +PM CRS+ S V GK LR+ FTKK V+TSH Sbjct: 16 SPEFEFWMVRNPSFPQPNILSADQLIVNGVLLPLHLLNKPDPSPAITDSSSSSSSAATASK----RWKDIFKKSDKKNT-----DAKKLKEKKSGVTTSAELNINIWPFSRSKSAGNAATRPKPFVPATRKANSAPCSRSNSAGESKSRKWPSSPARPGVHLGRSSPVWQVRRPKNPVPEPLNPDINKSKRESHRSKVVGGSGSSKTKVLNLNVPMCIGYRHHFTCRSDENSAIRVSNPNPPHAHANVGGKLFTLRSLFTKKNVVTSH 274
BLAST of Ca_03396 vs. TrEMBL
Match: F6HRE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g00350 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.800e-28 Identity = 79/158 (50.00%), Postives = 91/158 (57.59%), Query Frame = 1 Query: 202 RWKDIFIK--KKKTNNAEXXXXXXXXXXXXXGVS--TSPELNINIWPFSRSSSAGNSVIRPKSV-----TRRVNSAPCSRSNSAGDSKSRKWPSS---PGVHLARSSPIWQGRRGGSGVKKTEAMY-----------LKQRRSRVGSTGCGGGIPMCR 606 RWKDIF K KK N E S +S ELNINIWPFSRS SAGN+ +RP+ TR+V+SAPCSRSNSAG+SKSRKWPSS PGVHL RSSP+WQ RRGGS K E + + RR+R + GIP R Sbjct: 112 RWKDIFKKGEKKSAKNGEDKEKEKEKKKERKSGSGASSAELNINIWPFSRSRSAGNNAVRPRMAAGGAGTRKVSSAPCSRSNSAGESKSRKWPSSPGRPGVHLGRSSPVWQVRRGGSASKSLEPLVRNAEKGSKKEGSENRRNRTPAPAPPAGIPKAR 269
BLAST of Ca_03396 vs. TrEMBL
Match: Q2HTG5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC150441g24v1 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.370e-27 Identity = 93/235 (39.57%), Postives = 113/235 (48.09%), Query Frame = 1 Query: 202 RWKDIFIKKKKTNNAEXXXXXXXXXXXXX-----------GVSTSPELNINIWPFSRSSSAGNSVIRPK-----SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGG------------SGVKKTEAMYLKQRRSRVGSTGCGG------GIPM---------CRSEVKST--VSG----------------------------KLRTFFTKKTVLTSH 678 RWKDIF K +K N + G +++ ELNINIWPFSRS SAGN+ RPK VTR+VNSAPCSRSNSAG+SKSRKWPSSP GVH+ R+SP+WQ RRGG + K+ + RRS+V S G G +PM CRS+ S VSG LR FTKK+++TSH Sbjct: 113 RWKDIFRKGEKNNTEDKEKEKEKEKEKKNKDKKKERKNGNGANSAAELNINIWPFSRSRSAGNTTTRPKFFTGAPVTRKVNSAPCSRSNSAGESKSRKWPSSPGRAGVHVGRNSPVWQVRRGGGKNSDQQTQQGSNTDKELKKEATVSRRSKVVSGGGGKAKVLSLNVPMCIGYRHHLSCRSDENSAIGVSGGVAVNRGGGDGGGGECHHHDEGSGGNLFNLRNLFTKKSIVTSH 347
BLAST of Ca_03396 vs. TrEMBL
Match: K7MAT8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.370e-27 Identity = 80/154 (51.95%), Postives = 91/154 (59.09%), Query Frame = 1 Query: 202 RWKDIFIKKKK----TNNAEXXXXXXXXXXXXXGVSTSPELNINIWPFSRSSSAGNSVIRPKSV-----TRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGG--------IPMC 603 RWKDIF K K TNN E ++S ELNINIWPFSRS SAGN+ RPK TR+VNSAPCSRSNSAG+SKSRKWPSSP GVH+ RSSP+WQ RR S + K RRS+V + GGG +PMC Sbjct: 150 RWKDIFKKSDKKNAETNNNEEKEKAKKKERKSASGASSAELNINIWPFSRSRSAGNAGTRPKLFAGAPPTRKVNSAPCSRSNSAGESKSRKWPSSPGRAGVHVGRSSPVWQVRRKNSNEPPQKP---KARRSKVTA---GGGTARVLNLNVPMC 297
BLAST of Ca_03396 vs. TrEMBL
Match: G7ILP6_MEDTR (Cytochrome b6 OS=Medicago truncatula GN=MTR_2g024980 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.536e-26 Identity = 78/171 (45.61%), Postives = 94/171 (54.97%), Query Frame = 1 Query: 202 RWKDIFIKKKKTNNAEXXXXXXXXXXXXX-----------GVSTSPELNINIWPFSRSSSAGNSVIRPK-----SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGG------------SGVKKTEAMYLKQRRSRVGSTGCGG------GIPMC 603 RWKDIF K +K N + G +++ ELNINIWPFSRS SAGN+ RPK VTR+VNSAPCSRSNSAG+SKSRKWPSSP GVH+ R+SP+WQ RRGG + K+ + RRS+V S G G +PMC Sbjct: 113 RWKDIFRKGEKNNTEDKEKEKEKEKEKKNKDKKKERKNGNGANSAAELNINIWPFSRSRSAGNTTTRPKFFTGAPVTRKVNSAPCSRSNSAGESKSRKWPSSPGRAGVHVGRNSPVWQVRRGGGKNSDQQTQQGSNTDKELKKEATVSRRSKVVSGGGGKAKVLSLNVPMC 283
BLAST of Ca_03396 vs. TrEMBL
Match: R0H0I0_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10005180mg PE=4 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.219e-25 Identity = 65/119 (54.62%), Postives = 75/119 (63.03%), Query Frame = 1 Query: 202 RWKDIFIKKK-----KTNNAEXXXXXXXXXXXXXGVSTSPELNINIWPFSRSSSAGNSVIRPKS-----VTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSG 519 RW+DIF K + K + G + ELNINIWPFSRS SAGN+V RP+ TR+V+SAPCSRSNS G+SKSRKWPSSP GVHL RSSP+WQ RRGG G Sbjct: 122 RWRDIFRKSETKPPGKKEKVKESKKKDKKIGSGPGSGSGAELNINIWPFSRSRSAGNNVTRPRMSFGAPTTRKVSSAPCSRSNSTGESKSRKWPSSPGRNGVHLGRSSPVWQVRRGGGG 240
BLAST of Ca_03396 vs. TrEMBL
Match: B9RXE8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903250 PE=4 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 4.942e-25 Identity = 66/118 (55.93%), Postives = 73/118 (61.86%), Query Frame = 1 Query: 202 RWKDIFIK--------KKKTNNAEXXXXXXXXXXXXXGVSTSPELNINIWPFSRSSSAGNSVIRPK---SVTRRVNSAPCSRSNSAGDSKSRKWPSSPG-VHLARSSPIWQGRRGGSG 519 RWKDIF K K + + S+S ELNINIWPFSRS SAGNS RP TR+V+SAPCSRSNSAG+SKSRKWPSSPG HL RSSP+WQ RRG G Sbjct: 114 RWKDIFKKGENKATSSKNQRDKDNDREKKKEKKNQSGATSSSAELNINIWPFSRSRSAGNSGARPTMFPGTTRKVSSAPCSRSNSAGESKSRKWPSSPGRAHLGRSSPVWQARRGSGG 231
BLAST of Ca_03396 vs. TrEMBL
Match: M5X3W9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015874mg PE=4 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 8.430e-25 Identity = 74/154 (48.05%), Postives = 87/154 (56.49%), Query Frame = 1 Query: 202 RWKDIFIK-KKKTNNAEXXXXXXXXXXXXXGVS--TSPELNINIWPFSRSSSAGNSVIRPKS-----VTRRVNSAPCSRSNSAGDSKSRKWPSS----PGVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGGIPMCRSEVKSTV 627 RW+DIF K +KKT E G + +S ELNINIWPFSRS SAGN+ RPK TR+VNSAPCSRSNS G+SKSRKWP + PGVHL RSSP+WQ RRG S K+ + R G +P R +TV Sbjct: 25 RWRDIFKKGEKKTVKGEENDKEKDKKKERKGGTGASSAELNINIWPFSRSRSAGNAYTRPKPPFGSPATRKVNSAPCSRSNSTGESKSRKWPPASPGRPGVHLGRSSPVWQVRRGSSVAVKSSL----EPHVRNAEKGTKKEVPESRRSKNTTV 174
BLAST of Ca_03396 vs. TrEMBL
Match: I1KZW6_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.438e-24 Identity = 69/119 (57.98%), Postives = 80/119 (67.23%), Query Frame = 1 Query: 295 STSPELNINIWPFSRSSSAGNSVIRPK-----SVTRRVNSAPCSRSNSAGDSKSRKWPSSP---GVHLARSSPIWQGRRGGSGVKKTEAMYLKQRRSRVGSTGCGGG--------IPMC 603 ++S ELNINIWPFSRS SAGN+ RPK VTR+VNSAPCSRSNSAG+SKSRKWPSSP GVH+ RSSP+WQ RR S + K RRS+V + GGG +PMC Sbjct: 22 ASSAELNINIWPFSRSRSAGNAGTRPKLFAGAPVTRKVNSAPCSRSNSAGESKSRKWPSSPGRAGVHVGRSSPVWQVRRKNSNEPPQKP---KTRRSKVAA---GGGTARVLNLNVPMC 134 The following BLAST results are available for this feature:
BLAST of Ca_03396 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_03396 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0
Expression
Available Analyses Select an Expression Analysis Select a property to group and sort biological samples Select a property to color biological samples Hover the mouse over a column in the graph to view more information about that biological sample. You can click and drag to rearrange groups along the x-axis. You can also click and drag to move the legend. InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_03396_v1.0_kabuli ID=Ca_03396_v1.0_kabuli; Name=Ca_03396; organism=Cicer arietinum; type=mRNA; length=681bpback to top protein sequence of Ca_03396_v1.0_kabuli >Ca_03396_v1.0_kabuli ID=Ca_03396_v1.0_kabuli; Name=Ca_03396_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=226bpback to top mRNA from alignment at Ca7:814887..815567+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_03396_v1.0_kabuli ID=Ca_03396_v1.0_kabuli; Name=Ca_03396; organism=Cicer arietinum; type=mRNA; length=681bp; location=Sequence derived from: Ca7:814887..815567+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca7:814887..815567+ >Ca_03396_v1.0_kabuli ID=Ca_03396_v1.0_kabuli; Name=Ca_03396; organism=Cicer arietinum; type=CDS; length=681bp; location=Sequence derived from: Ca7:814887..815567+ (Cicer arietinumback to top |