Ca_07826.1, Ca_07826.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_07826.1
Unique NameCa_07826.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length6222
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_3supercontigCa_LG_3:40328480..40334701 +Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR236Pisum sativum Cameor genome v1aPisum sativum
caipsR261Pisum sativum Cameor genome v1aPisum sativum
caipsR291Pisum sativum Cameor genome v1aPisum sativum
caipsR292Pisum sativum Cameor genome v1aPisum sativum
caipvR0233Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0289Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0313Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0225Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0285Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0320Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0262Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0307Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0321Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0703Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0795Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1068Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1074Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1290Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1298Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1394Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL175Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL434Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL545Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL767Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR235Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caizwsR306Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caizwsR309Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR228Vicia faba cv. Tiffany genome v1.0Vicia faba
caitifR238Vicia faba cv. Tiffany genome v1.0Vicia faba
caitifR266Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR223Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivfhR232Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivfhR261Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR226Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR264Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0263Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0325Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0373Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR215Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR269Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR299Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0235Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0243Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0322Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vigun01g169700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014640504.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat3g036120.1Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_19715Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.3g038680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat06G0216500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_28570Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
LR48_mrnaVigan02g080000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat03G0141500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_02588Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg1159.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.5g146600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan03g238100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr01.1623.1.62113176Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_20475Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.001G186700.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg31837.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.007G223200.10Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr07.2184.2.6211317bVigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_010165Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Hedin2.R1.3g046280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.5g117920.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_012714189.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_07826Ca_07826_ICC4958_v2Cicer arietinumgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_07826.1.utr5p1Ca_07826.1.utr5p1_ICC4958_v2Cicer arietinumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_07826.1.exon1Ca_07826.1.exon1_ICC4958_v2Cicer arietinumexon
Ca_07826.1.exon2Ca_07826.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_07826.1.exon3Ca_07826.1.exon3_ICC4958_v2Cicer arietinumexon
Ca_07826.1.exon4Ca_07826.1.exon4_ICC4958_v2Cicer arietinumexon
Ca_07826.1.exon5Ca_07826.1.exon5_ICC4958_v2Cicer arietinumexon
Ca_07826.1.exon6Ca_07826.1.exon6_ICC4958_v2Cicer arietinumexon
Ca_07826.1.exon7Ca_07826.1.exon7_ICC4958_v2Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_07826.1.cds1Ca_07826.1.cds1_ICC4958_v2Cicer arietinumCDS
Ca_07826.1.cds2Ca_07826.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_07826.1.cds3Ca_07826.1.cds3_ICC4958_v2Cicer arietinumCDS
Ca_07826.1.cds4Ca_07826.1.cds4_ICC4958_v2Cicer arietinumCDS
Ca_07826.1.cds5Ca_07826.1.cds5_ICC4958_v2Cicer arietinumCDS
Ca_07826.1.cds6Ca_07826.1.cds6_ICC4958_v2Cicer arietinumCDS
Ca_07826.1.cds7Ca_07826.1.cds7_ICC4958_v2Cicer arietinumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_07826.1.utr3p1Ca_07826.1.utr3p1_ICC4958_v2Cicer arietinumthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_07826.1_ICC4958_v2Ca_07826.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_07826.1 vs. DB:Swiss
Match: PCFS4_ARATH (Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana OX=3702 GN=PCFS4 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.409e-56
Identity = 152/410 (37.07%), Postives = 201/410 (49.02%), Query Frame = 1 
Query:   55 PRLIDLNSTARP-----FPQRQHGSGVTTTLSSSARFQINDRDSERSDLDHGGGEYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAMSIAETVCTNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCTAYREVDPPVHSSMRHLFGTWRGVFPPQDLQIIEKELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLER----------QRLQQSSRTKGV-----FNDMTGSISNTNEDSERPD----RALGAARPWLDPRVNINNNQHTQRDVFHDSVPEKSIGGAYGDDEYNSTVSSNLGSGVGRTGSR-LIGGVAETVSGQRNGFSLKHSFSSHAAPKSMNLNAHHQPTQTITNVRSSAMSSNWKNSEEEEFMWDEMNSSL 1209
            PRL+ +NST+R       PQ+        +L    +  +N R+ E      GGGE    PP   E+V  Y+  L ELTFNSKPIIT+LTIIAGE       IA  +CT ILE P +QKLPSLYLLDSIVKNIGRDY +YF+ RLPEVFC AYR+  P +H SMRHLFGTW  VFPP  L+ I+ +L  + A N S+  +      S+  +P   IHVNPKYL R          + +  S+R  G      +ND    + + +  S  PD    R+   A P  +   N    + T RD                D+        NLG G      R LI       S                  K + +N   +P + +  + S  M + W+N+EEEEF W++M+ +L
Sbjct:    9 PRLVSINSTSRKGMSVELPQKPP---PPPSLLDRFKALLNQREDE-----FGGGE-EVLPPSMDEIVQLYEVVLGELTFNSKPIITDLTIIAGEQREHGEGIANAICTRILEAPVEQKLPSLYLLDSIVKNIGRDYGRYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSSVFPPPVLRKIDMQLQLSSAANQSSVGA------SEPSQPTRGIHVNPKYLRRLEPSAAENNLRGINSSARVYGQNSLGGYNDFEDQLESPSSLSSTPDGFTRRSNDGANP-SNQAFNYGMGRATSRD----------------DEHMEWRRKENLGQGNDHERPRALIDAYGVDTS------------------KHVTIN---KPIRDMNGMHSK-MVTPWQNTEEEEFDWEDMSPTL 364

HSP 2 Score: 125.946 bits (315), Expect = 4.130e-28
Identity = 61/170 (35.88%), Postives = 99/170 (58.24%), Query Frame = 1 
Query: 2560 IGFDFKPDVIREMHPDVITELLDELPHHCSNCGIRLKQQEQLDRHLEWHATKER-EQNGLITASRRWYAKSNDWIAGKAEYLSESEIADSM--DAYDEKTDESQLDSMVVADENQCLCVLCGELFEDVYCQVSDQWMFKEAVYLNN-SDSNDEIESRNVGPIIHVRCLSE 3057
            +G +F  D+++  +   I+ L  +LP  C+ CG+R K QE+  +H++WH TK R  +N     SR+W+  ++ W++G AE L    +   +  +   EK D+   D  V ADE+Q  C LCGE FED Y   +++WM+K AVY+N   +S  +++   +GPI+H +C  E
Sbjct:  625 LGLEFDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQNPSRKWFVSASMWLSG-AEALGAEAVPGFLPTEPTTEKKDDE--DMAVPADEDQTSCALCGEPFEDFYSDETEEWMYKGAVYMNAPEESTTDMDKSQLGPIVHAKCRPE 791
[Close]
BLAST of Ca_07826.1 vs. DB:Swiss
Match: PCFS5_ARATH (Polyadenylation and cleavage factor homolog 5 OS=Arabidopsis thaliana OX=3702 GN=PCFS5 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.039e-21
Identity = 58/176 (32.95%), Postives = 84/176 (47.73%), Query Frame = 1 
Query: 2560 IGFDF-KPDVIREMHPDVITELLDELPHHCSNCGIRLKQQEQLDRHLEWHATKEREQNGLI------TASRRWYAKSNDWI---AGKAEYLSESEIADSMDAYDEKTDESQLDSMVVADENQCLCVLCGELFEDVYCQVSDQWMFKEAVYLNNSDSNDEIESRNVGPIIHVRCLSE 3057
            +G  F  P  +   H  VI  L  ++P  C++CG+R K QE+  +H++WH  K R              SR W A ++ W+    G       S     M   +EK D+ Q   MV ADE+Q  C LC E FE+ +   +D WM+K+AVYL  +           G I+HV+C+ E
Sbjct:  220 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCTSCGVRFKCQEEHSKHMDWHVRKNRSVKTTTRLGQQPKKSRGWLASASLWLCAPTGGGTVEVASFGGGEMQKKNEK-DQVQKQHMVPADEDQKNCALCVEPFEEFFSHEADDWMYKDAVYLTKN-----------GRIVHVKCMPE 383
[Close]
BLAST of Ca_07826.1 vs. DB:Swiss
Match: PCFS1_ARATH (Polyadenylation and cleavage factor homolog 1 OS=Arabidopsis thaliana OX=3702 GN=PCFS1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.904e-21
Identity = 58/175 (33.14%), Postives = 82/175 (46.86%), Query Frame = 1 
Query: 2560 IGFDF-KPDVIREMHPDVITELLDELPHHCSNCGIRLKQQEQLDRHLEWHATKEREQNGLI------TASRRWYAKSNDWI--AGKAEYLSESEIADSMDAYDEKTDESQLDSMVVADENQCLCVLCGELFEDVYCQVSDQWMFKEAVYLNNSDSNDEIESRNVGPIIHVRCLSE 3057
            +G  F  P  +   H  VI  L  ++P  CS+CG+R K QE+  +H++WH  K R              SR W A ++ W+  A   E +  +     M     K DE     MV ADE+Q  C LC E FE+ +    D WM+K+AVYL  +           G I+HV+C+ E
Sbjct:  227 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGLRFKCQEEHSKHMDWHVRKNRSVKTTTRLGQQPKKSRGWLASASLWLCAATGGETVEVASFGGEMQKKKGK-DEEPKQLMVPADEDQKNCALCVEPFEEFFSHEDDDWMYKDAVYLTKN-----------GRIVHVKCMPE 389
[Close]
BLAST of Ca_07826.1 vs. DB:Swiss
Match: PCF11_HUMAN (Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens OX=9606 GN=PCF11 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 1.566e-20
Identity = 59/165 (35.76%), Postives = 82/165 (49.70%), Query Frame = 1 
Query:  247 YKAALAELTFNSKPIITNLTIIAGENLSAAMSIAETVCTNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCTAYREVDPPVHSSMRHLFGTWRGVFPPQDLQIIEKELG----------FTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLER 711
            Y+++L +LTFNSKP I  LTI+A ENL  A  I   +     + PS +KLP +YL+DSIVKN+GR+Y+  F   L   F   + +VD     S+  L  TW  +FP + L  ++  +             P VN S                  SIHVNPK+L +
Sbjct:   22 YQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTS------------------SIHVNPKFLNK 168
[Close]
BLAST of Ca_07826.1 vs. DB:Swiss
Match: YD14_SCHPO (Uncharacterized protein C4G9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4G9.04c PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.674e-18
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:  247 YKAALAELTFNSKPIITNLTIIAGENLSAAMSIAETVCTNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCTAYREVDPPVHSSMRHLFGTWR 552
            Y +AL +LTFNSKPII  LT IA EN   A+SI   +  +I + P + KLP+LYLLDSI KN+G  Y  +F + L   F +AY  V+P +   +  L  TW+
Sbjct:    8 YLSALEDLTFNSKPIIHTLTYIAQENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSISKNLGAPYTYFFGLHLFSTFMSAYTVVEPRLRLKLDQLLATWK 109

HSP 2 Score: 58.5362 bits (140), Expect = 2.828e-7
Identity = 42/162 (25.93%), Postives = 72/162 (44.44%), Query Frame = 1 
Query: 2602 PDVITELLDELPHHCSNCGIRL----KQQEQLDRHLEWH--ATKEREQNGLITASRRWYAKSNDWIAGKAEYLSESEIADSMDAYDEKTDESQLDSMVVADENQCL----CVLCGELFEDVYCQVSDQWMFKEAVYLNNSDSNDEIESRNVGPIIHVRCLSE 3057
            P + + L +   + C+NCG R     + +++LD+H +WH    K   ++ L   +R W+    +W+  K E    +E A  ++   +K  ES     V+   +       C +C E F+ V+ + ++ W+F  AV         E E R    I H  CL E
Sbjct:  409 PKLSSLLYENYSNQCANCGRRYGNDPESRKELDKHSDWHFRINKRIRESSLHGINRCWFVMEEEWVNSKEEEDLITETAQEIEEQRQKQMESVRSQYVLTPLDPIAASEPCPICQEKFQSVWHEEAEVWVFMNAV---------EEEGR----IFHATCLQE 557
[Close]
BLAST of Ca_07826.1 vs. DB:Swiss
Match: PCF11_YEAST (Protein PCF11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PCF11 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.433e-14
Identity = 55/181 (30.39%), Postives = 87/181 (48.07%), Query Frame = 1 
Query:  235 LVTQYKAALAELTFNSKPIITNLTIIAGENLSAAMSIAETVCTNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCTAYREVDPPVHSSMRHLFGTWRG-------VFPPQDLQIIEKELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVFND 756
            +V  + + L ELTFNS+PIIT LT +A EN+S A    + + + I +    QKL + Y LDSI KN+G  Y  YF+  L  ++   Y  VD    + + ++F  W         +F    L+ IE+ L           ASA  + + Q+  P  ++ +  + +++     S R K   ND
Sbjct:    8 IVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFL---------IKASALHQKNLQAMLPTPTVPLLLRDIDKLTCLTSERLKNQPND 179
[Close]
BLAST of Ca_07826.1 vs. DB:Swiss
Match: PCF11_CAEEL (Polyadenylation and cleavage factor homolog 11 OS=Caenorhabditis elegans OX=6239 GN=pcf-11 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.700e-8
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:  247 YKAALAELTFNSKPIITNLTIIAGENLSAAMSIAETVCTNILEVPSDQKLPSLYLLDSIVKNIGR--DYIKYFAVRLPEVFCTAYREVDPPVHSSMRHLFGTWRG--VFPPQDLQIIEKEL 597
            Y+  LAEL  N+K  I  LTI+A +   AA  I E +  ++      QKL  +Y+ DSI+KN+ +  DY   FA ++  +F  A+R+ D  + +S+  +  TW    +F P  L  ++ ++
Sbjct:   11 YRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSPSQKLLVMYVCDSILKNVKKPNDYDALFARKIVSMFEHAFRQGDERIRTSLYRIRVTWASTTLFMPSKLYELDMKI 131
The following BLAST results are available for this feature:
BLAST of Ca_07826.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
PCFS4_ARATH2.409e-5637.07Polyadenylation and cleavage factor homolog 4 OS=A... [more]
PCFS5_ARATH1.039e-2132.95Polyadenylation and cleavage factor homolog 5 OS=A... [more]
PCFS1_ARATH3.904e-2133.14Polyadenylation and cleavage factor homolog 1 OS=A... [more]
PCF11_HUMAN1.566e-2035.76Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo ... [more]
YD14_SCHPO1.674e-1846.08Uncharacterized protein C4G9.04c OS=Schizosaccharo... [more]
PCF11_YEAST3.433e-1430.39Protein PCF11 OS=Saccharomyces cerevisiae (strain ... [more]
PCF11_CAEEL2.700e-832.23Polyadenylation and cleavage factor homolog 11 OS=... [more]
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006569CID domainSMARTSM00582558neu5coord: 78..200
e-value: 4.9E-42
score: 155.6
IPR006569CID domainPROSITEPS51391CIDcoord: 75..203
score: 34.416
IPR006569CID domainCDDcd03562CIDcoord: 80..190
e-value: 2.25166E-38
score: 136.573
IPR006903RNA polymerase II-binding domainPFAMPF04818CTD_bindcoord: 131..184
e-value: 4.1E-7
score: 30.7
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 72..200
e-value: 1.9E-40
score: 139.9
IPR008942ENTH/VHSSUPERFAMILY48464ENTH/VHS domaincoord: 75..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 435..463
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 525..765
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 738..765
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 675..720
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 607..631
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 525..579
NoneNo IPR availablePANTHERPTHR15921:SF9coord: 1..1028
NoneNo IPR availablePANTHERPTHR15921PRE-MRNA CLEAVAGE COMPLEX IIcoord: 1..1028
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 882..902
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 880..907
score: 8.891

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_07826.1_ICC4958_v2 ID=Ca_07826.1_ICC4958_v2; Name=Ca_07826.1; organism=Cicer arietinum; type=mRNA; length=6222bp
ATTTTTTGTTTTTATTATTTTTTCCCCATTCATCCATGCGAATTGGGGAT
TAGGGTTTATCTCAATCCTCACTGCCAATAAAATCCACGCGATAAGCAAT
AAGCGGAATGCTATATCCATGTTGTAAATCTACTTCTCAAGTTGCGTTAG
GGTTAAGATTAGGGTTTTAGATTCGTCGTGTTTGATTTTAGTGGACATGG
ATAGCACGCGTAGATCGTTGGATAGATCCAGAGAACCGGGCTCCAAGAAG
CCCAGATTGATCGATCTCAACTCCACCGCACGACCGTTTCCTCAGCGGCA
ACATGGCTCTGGGGTTACTACAACGTTGTCTTCTTCTGCTAGGTTTCAAA
TAAACGACAGAGACTCCGAAAGAAGCGATTTGGATCACGGTGGCGGTGAG
TATCACCCACAGCCACCGCCACATCAAGAACTCGTGACGCAGTATAAGGC
TGCACTTGCTGAACTCACTTTTAACTCGAAACCCATAATTACCAACTTGA
CTATAATTGCTGGAGAGAATCTTTCTGCTGCCATGTCAATTGCTGAGACT
GTTTGTACAAACATTCTAGAGGTGAATCTCAGTTTGCACTCAGCAATTGT
TTCTGTTGTGTCTGTATATTTTTTGTTTTTGGTTCTGATTTATGGCTGAT
TAAATTGAATTGAATTGTAATTGATTTGGAATGAAAAGTGCACTTCGATT
TGATCTTTCTGATGTTATTATATGCTCGTGTTATTATTGATAAATTGGGT
TACTGGAATTGTACCCGTGTAGGGGTTTTATGATAATATTAATAATTATG
GTTAATGCTAGTTAGAAAAGAAGACCCTCATTGGTCCTGTCTGGGTTTTC
TGTGGTAGATGTTCTCAAGTTGAACTCTCTACCTGCACCTGATAAAAAAG
AAAAACATATATAGTTTTTTGAGTCCTTGTTACGAAAAGGAAAAACAACT
TGCGCTAGATGACGAGTTGATGTCAGGTAGGTCAATTTCAAGTATGATAC
TGTAAGGATCCTGTTAGTGTTAGGATACTAGGTTTGAGCTGTAGCCCAAT
ATCCTAACAGAGTTCATATCCCGCTGACGAGCTAAGTCATCAAAAAGTTG
TGCTCACAATTCTCCTGATCTTCTGCCGATTTGTATGCGAAGCGGATTAA
GAATCTTTGGAAATTTGTGTCTGTTTTAATTAGTGCTGAAGTAAACTTTT
GGTGAAATTTGATGCTAATTTCTAATTTAGGTATATATTGTTGGTTTCAG
TTGTATTTCTCAATCCTTGTTTACATTTGTTGTGGCAATCTTACTTCTAA
CCCATTGCCTGTTTGTGCGTTTTTTATATAAGAAAGGGTGTCATTGAATT
GAGTTAATAACTTTCCAGGTTCCAAGTGACCAAAAGCTGCCATCGCTTTA
TCTCTTGGACAGCATTGTTAAGAATATTGGGCGGGACTACATAAAATACT
TCGCTGTTAGATTACCTGAGGTCAGTTATCTATATCTATCCCTTTCATTG
GCTTTCATCCCTTCAGATTGTGAAATAAAATCAAGAAATGAATTTTATGC
TAAACTGTTCATGTTTGATTTGGTTACATGGATACTGATATTGCAATAGT
TCGTGCATTGCCATAAAAAATGAATTAGATAATTGTTATCAAATGGAGTT
TTTCACTTTTCATTCTGTTGTGAATGTTTTCTAATTTTATACACCTATTT
TTAACTAGGTACTTGCCAATTACTCCTTTACATTTTAGGTATTCTGCACG
GCATACAGAGAGGTTGACCCTCCTGTCCATTCAAGCATGAGGCATCTTTT
TGGAACTTGGAGAGGAGTCTTTCCTCCTCAGGACCTCCAGATAATTGAGA
AGGAGCTCGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCT
ACACTTAGAAGTGATTCTCAGAGTCAACGCCCACCTCATAGCATCCATGT
TAATCCCAAATATTTAGAAAGACAACGTCTTCAGCAGTCCAGCAGGGTAG
GTGACTTGATTTCTAATAAACTAATCCTTTAAATAATTGAAAAGTTGGAT
CCAATTGGAATAGGTCAAGATTGGACAGTATTGCAGAATAATGATCTGAT
GAATTGGATTTTGCTGTCACGTGTATTTTGAATGATGAAACGGCACTGGA
AGATACATTATCGCCATCAAATTTTGAGCTTGATTATTGCTTATTACTTT
TATTGAAACAAAATACTGTATTCTTTTTATTAGTGTTTTTAAGTATATTG
GAACTTTCACTAAGTACAGAAACTGTCCTAATTTTGTGCCTGTTATTTTG
TGGATTTTGCTGTTCTGTTCATGGTATGACATATGGTACACATGCTAACA
ATCTTGACAGACTTCACTTAAAACTTCAAAGTAATATTTTGTAATTTGAA
TACTTTCTTCATAATAACTTTATATACATATTTTATATTTTATGTAAGTC
ATTTCGACTCACAATACTTATGACAAATCACCATCTATTCTGTACAATGT
TTTCCTTTTTACACCCTATGACCTTATCTATGGTACTTGATTCTTTTGTC
ATATCCTTTTTTGTCTTATGAAGACTAAAGGAGTATTTAATGATATGACT
GGATCTATTTCAAACACAAATGAGGACTCAGAGAGGCCAGATAGAGCTTT
GGGTGCTGCACGACCATGGCTGGATCCTAGGGTTAACATAAATGTATGTG
AAGTAATTTATCTTTTCTTCTTTATACTACTATTAAATCTGCTAATTGTC
ACATATTAATTTAATGGTGTATATTGCAGAATAATCAGCATACTCAAAGA
GATGTATTTCATGATTCTGTTCCTGAAAAGAGCATTGGTGGAGCCTATGG
AGACGATGAATATAATTCTACTGTTTCAAGTAATTTGGGCTCAGGTGTTG
GAAGAACTGGAAGTAGACTCATTGGCGGTGTTGCAGAGACCGTATCCGGG
CAAAGAAATGGTTTCAGCCTCAAACATAGTTTTTCAAGTCATGCAGCACC
GAAGTCTATGAATTTGAATGCACATCATCAGCCAACACAAACCATAACTA
ACGTAAGGAGCAGTGCAATGTCAAGTAACTGGAAAAATTCAGAGGAAGAG
GAGTTCATGTGGGATGAGATGAACTCTAGTTTGCCCGATCATGTACCCAA
TGTCTCTAGCAACTTGAGCACCGACCCGTGGATGGCCGATGACGACAATT
TGGTAAGTTGGCTACAATAAAGGGTCAATTGCACTTTGCACCACCTGTAC
TGCAAGTAATTTTATGGCAATATTAAGAAGGCCAATTCACCCTATCTGAT
TTTGATGAGAATGCTCCAAAAGAAATTTAGCTTGTCGCTTTTGGCACAGT
TAAAACTTAGAACATCTTTTATAGTCTTCTTTATGTCTTGAAAAGTCACC
TGTATGTATGTTCGGTCTAATTGGAAGAATCAATTACCAACTCGAAAGAT
GGTGGACAAATTAGAAAAGCATACTAAAGGAAGCGGCAACACGACAAAAT
GCAATGATAAAGTTTACTATGTCTAACGAAATAGGGTGGTAAAGTATAAC
TGGCAATGATAAAACTGTTGTATCAGATTGAGGTAGAACAGAGCTGGGGC
CAAGGAATGATGCATAGAAACAAAATAAAATGGCAATCACCTCTATGCAG
GACTCTTTCCCTTGGATATAGATAATATGCCTAATTTTGTTGACTTAAAA
ACCGCTTATTTAAATTCCAAATATCCTAATAAAACTAAGACATAGTTTCC
TAATTCAACTTGGCATAAGATATACTAGGACCCAAACAATTAAAGTATTA
AACACTAATTTCTGTAATTACTAACTTATATTTCATCCCTTCATTCTTCA
TCATAAATATTTCATATATATTTTATCTGATCTCGACTGATTTTGTTTTC
CACATGCAGGAAAGTGAAGATCAGCTCCAAATCACACACCCAATTGGAAC
AAAGGTTAATAGAAAAATGTCCACTGTTAAGAAACAACTACCGTCATCTG
GGGGTCATTCATCATTATCATGGGAGTTGCAGAAGCAGCTCCCAAGTGAC
AAATTGAATATGAAGTCGGGTCACTCAGAATTATTTGTTTCCGCTCCAAG
TAGCTTACCCAAGAATTCGAATGCGTTGGCTGGGAGGATGAGGAATCAGT
CTTTTATACCGCATACAACTATAGGAATGGGCAAAATTGTGGGACAGCAG
CAGTTTGATTCTGAGGGGGTCGAATCCCCTTCTGCACAGTCACCTCTGCG
ACAACAGTCTCCATCGGTGCCAGTAACCACACAACTCCCTCATTCAATGC
AAAATTTGGCTGAGCAAGATTGTCCACCAACTCTTAAAACATCTCAACAT
TTGGGTGGTCTGCAAAGTCAAAATATTAGAGATCCCGCACCTGCCTTCCG
TCCCAATGTTCAGGTTGGTAACTTGCGAAAATCACAGGAAAAGGACATGC
GGGGTCCACCATCTTCTGTAACTACTTTTCAGCCAAGACCTCAGCAACAG
CAGGCGGTGCCTTCACAGGCTGACATTAGTCTTAAAGCTAAGCAGCCACC
CAAGTCTAAAGTTTCTTTAGCAAAAGAAACTTCCGAAAAGTCAACCTCAA
AGAGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCCAAAAAATCA
ATTACTAGAAGTCTGGATGCAAGTAGCCGTCCATCTCAACAAGCGGCTAA
GCCTACTCGGTTAGGTGCTCCTTCCCCTACCACATTAATTTCTTCGGGGG
CTTCTGCTATGTCACTATCTTCAGTCGGTCCTCCAAATGATTATTCAGCT
ACTCTGCCAAAACTACCTAAAGGGAAGGCTGGAAAGCGGCAAAGAGATTC
TACTCAACCATCTGCTTCCTCTAAGGATTGCAGTGCATCAACTCCGAGCT
CAAATGCCACTAATAAGAATACCTTGAATCCAATTTCAAATCTTTTAAGC
TCATTAGTTGCTAAAGGTTTGATATCAGCAGGAACAGAGTCAGCAACTAC
AGTGTCAAGTGAGATGGTGATTCGATCGGAAGACCAAACTGAAAGCATTA
TTGTCAGTTCCACTTTGCCAGTTGCTTCAGTTCCTGTTTCTGCAGCTGTC
CCTGTACCGTCTTCCAGAGATGGGGTAGATGATGCTGCAAAAGCCTCACT
TGCCTTGTCCAAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTG
ATTTTAAACCTGATGTAATTCGAGAAATGCATCCAGATGTAATCACTGAA
TTATTGGATGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAA
ACAGCAAGAACAGTTAGATAGGCACTTGGAGTGGCATGCTACAAAAGAAA
GAGAACAAAATGGTCTGATTACGGCATCAAGAAGATGGTATGCAAAGTCA
AATGACTGGATTGCTGGCAAGGCCGAATATCTGTCTGAGTCCGAAATTGC
TGATTCCATGGATGCATATGATGAAAAAACAGATGAGAGTCAATTGGATT
CCATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAG
TTATTTGAAGATGTGTACTGTCAGGTAAGTGACCAGTGGATGTTCAAGGA
GGCTGTTTACTTGAACAACTCAGATAGCAATGACGAGATTGAAAGTAGAA
ATGTGGGCCCCATCATTCATGTTCGATGCTTATCGGAAAACTTAATGTCG
AGTGCGACCAATACAGTAAGGCTCATATTGAATTGAATGGATGTCTTCTA
ATTGATTTTTAAAGCTTCAATTAGTTTATTTGAAGGAATGTGTTAAAATG
TTTTGTAGTGATTGATTTGATTTGTTTTTTATGCAGGAACTTGATTAATA
CATTACGCTTATAGCATTGGACCGGAGGTAAAGTCAGAAGCTTCCCAAGG
GTTCCTAGGTTCTAGTTGCATACTATAACTAGATGGCCCTTCACAATTAA
AACTGTTGCCTCTGATTGCTCTCCATAGCAGTAAAACAAATTTTGTGCCC
TTTTTGTTTCATTTTCTTGTACTTGAGGGAAAAAAAATAGAAATTGCGCA
GTATTCAAAATATATAAATGTGAGATAGTTTTTTTTTGCAGCTAAACTTG
GTGTTTGATATGGTTGTGATAGCTTAATTTTACCATGATGATGAAGCGGA
TTTGTGCATTTAACGCATATGGGAATAATACAGAGGCTATGCCCCAATGC
CATCTTCATCCAAATGGCGGAT
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protein sequence of Ca_07826.1_ICC4958_v2

>Ca_07826.1_ICC4958_v2 ID=Ca_07826.1_ICC4958_v2; Name=Ca_07826.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=1031bp
MDSTRRSLDRSREPGSKKPRLIDLNSTARPFPQRQHGSGVTTTLSSSARF
QINDRDSERSDLDHGGGEYHPQPPPHQELVTQYKAALAELTFNSKPIITN
LTIIAGENLSAAMSIAETVCTNILEVPSDQKLPSLYLLDSIVKNIGRDYI
KYFAVRLPEVFCTAYREVDPPVHSSMRHLFGTWRGVFPPQDLQIIEKELG
FTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVF
NDMTGSISNTNEDSERPDRALGAARPWLDPRVNINNNQHTQRDVFHDSVP
EKSIGGAYGDDEYNSTVSSNLGSGVGRTGSRLIGGVAETVSGQRNGFSLK
HSFSSHAAPKSMNLNAHHQPTQTITNVRSSAMSSNWKNSEEEEFMWDEMN
SSLPDHVPNVSSNLSTDPWMADDDNLESEDQLQITHPIGTKVNRKMSTVK
KQLPSSGGHSSLSWELQKQLPSDKLNMKSGHSELFVSAPSSLPKNSNALA
GRMRNQSFIPHTTIGMGKIVGQQQFDSEGVESPSAQSPLRQQSPSVPVTT
QLPHSMQNLAEQDCPPTLKTSQHLGGLQSQNIRDPAPAFRPNVQVGNLRK
SQEKDMRGPPSSVTTFQPRPQQQQAVPSQADISLKAKQPPKSKVSLAKET
SEKSTSKSLPAPSVKSGIIPKKSITRSLDASSRPSQQAAKPTRLGAPSPT
TLISSGASAMSLSSVGPPNDYSATLPKLPKGKAGKRQRDSTQPSASSKDC
SASTPSSNATNKNTLNPISNLLSSLVAKGLISAGTESATTVSSEMVIRSE
DQTESIIVSSTLPVASVPVSAAVPVPSSRDGVDDAAKASLALSKSTSTEI
RNLIGFDFKPDVIREMHPDVITELLDELPHHCSNCGIRLKQQEQLDRHLE
WHATKEREQNGLITASRRWYAKSNDWIAGKAEYLSESEIADSMDAYDEKT
DESQLDSMVVADENQCLCVLCGELFEDVYCQVSDQWMFKEAVYLNNSDSN
DEIESRNVGPIIHVRCLSENLMSSATNTELD
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mRNA from alignment at Ca_LG_3:40328480..40334701+

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_07826.1_ICC4958_v2 ID=Ca_07826.1_ICC4958_v2; Name=Ca_07826.1; organism=Cicer arietinum; type=mRNA; length=6222bp; location=Sequence derived from: Ca_LG_3:40328480..40334701+ (Cicer arietinum
ATTTTTTGTTTTTATTATTTTTTCCCCATTCATCCATGCGAATTGGGGAT
TAGGGTTTATCTCAATCCTCACTGCCAATAAAATCCACGCGATAAGCAAT
AAGCGGAATGCTATATCCATGTTGTAAATCTACTTCTCAAGTTGCGTTAG
GGTTAAGATTAGGGTTTTAGATTCGTCGTGTTTGATTTTAGTGGACATGG
ATAGCACGCGTAGATCGTTGGATAGATCCAGAGAACCGGGCTCCAAGAAG
CCCAGATTGATCGATCTCAACTCCACCGCACGACCGTTTCCTCAGCGGCA
ACATGGCTCTGGGGTTACTACAACGTTGTCTTCTTCTGCTAGGTTTCAAA
TAAACGACAGAGACTCCGAAAGAAGCGATTTGGATCACGGTGGCGGTGAG
TATCACCCACAGCCACCGCCACATCAAGAACTCGTGACGCAGTATAAGGC
TGCACTTGCTGAACTCACTTTTAACTCGAAACCCATAATTACCAACTTGA
CTATAATTGCTGGAGAGAATCTTTCTGCTGCCATGTCAATTGCTGAGACT
GTTTGTACAAACATTCTAGAGGTGAATCTCAGTTTGCACTCAGCAATTGT
TTCTGTTGTGTCTGTATATTTTTTGTTTTTGGTTCTGATTTATGGCTGAT
TAAATTGAATTGAATTGTAATTGATTTGGAATGAAAAGTGCACTTCGATT
TGATCTTTCTGATGTTATTATATGCTCGTGTTATTATTGATAAATTGGGT
TACTGGAATTGTACCCGTGTAGGGGTTTTATGATAATATTAATAATTATG
GTTAATGCTAGTTAGAAAAGAAGACCCTCATTGGTCCTGTCTGGGTTTTC
TGTGGTAGATGTTCTCAAGTTGAACTCTCTACCTGCACCTGATAAAAAAG
AAAAACATATATAGTTTTTTGAGTCCTTGTTACGAAAAGGAAAAACAACT
TGCGCTAGATGACGAGTTGATGTCAGGTAGGTCAATTTCAAGTATGATAC
TGTAAGGATCCTGTTAGTGTTAGGATACTAGGTTTGAGCTGTAGCCCAAT
ATCCTAACAGAGTTCATATCCCGCTGACGAGCTAAGTCATCAAAAAGTTG
TGCTCACAATTCTCCTGATCTTCTGCCGATTTGTATGCGAAGCGGATTAA
GAATCTTTGGAAATTTGTGTCTGTTTTAATTAGTGCTGAAGTAAACTTTT
GGTGAAATTTGATGCTAATTTCTAATTTAGGTATATATTGTTGGTTTCAG
TTGTATTTCTCAATCCTTGTTTACATTTGTTGTGGCAATCTTACTTCTAA
CCCATTGCCTGTTTGTGCGTTTTTTATATAAGAAAGGGTGTCATTGAATT
GAGTTAATAACTTTCCAGGTTCCAAGTGACCAAAAGCTGCCATCGCTTTA
TCTCTTGGACAGCATTGTTAAGAATATTGGGCGGGACTACATAAAATACT
TCGCTGTTAGATTACCTGAGGTCAGTTATCTATATCTATCCCTTTCATTG
GCTTTCATCCCTTCAGATTGTGAAATAAAATCAAGAAATGAATTTTATGC
TAAACTGTTCATGTTTGATTTGGTTACATGGATACTGATATTGCAATAGT
TCGTGCATTGCCATAAAAAATGAATTAGATAATTGTTATCAAATGGAGTT
TTTCACTTTTCATTCTGTTGTGAATGTTTTCTAATTTTATACACCTATTT
TTAACTAGGTACTTGCCAATTACTCCTTTACATTTTAGGTATTCTGCACG
GCATACAGAGAGGTTGACCCTCCTGTCCATTCAAGCATGAGGCATCTTTT
TGGAACTTGGAGAGGAGTCTTTCCTCCTCAGGACCTCCAGATAATTGAGA
AGGAGCTCGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCT
ACACTTAGAAGTGATTCTCAGAGTCAACGCCCACCTCATAGCATCCATGT
TAATCCCAAATATTTAGAAAGACAACGTCTTCAGCAGTCCAGCAGGGTAG
GTGACTTGATTTCTAATAAACTAATCCTTTAAATAATTGAAAAGTTGGAT
CCAATTGGAATAGGTCAAGATTGGACAGTATTGCAGAATAATGATCTGAT
GAATTGGATTTTGCTGTCACGTGTATTTTGAATGATGAAACGGCACTGGA
AGATACATTATCGCCATCAAATTTTGAGCTTGATTATTGCTTATTACTTT
TATTGAAACAAAATACTGTATTCTTTTTATTAGTGTTTTTAAGTATATTG
GAACTTTCACTAAGTACAGAAACTGTCCTAATTTTGTGCCTGTTATTTTG
TGGATTTTGCTGTTCTGTTCATGGTATGACATATGGTACACATGCTAACA
ATCTTGACAGACTTCACTTAAAACTTCAAAGTAATATTTTGTAATTTGAA
TACTTTCTTCATAATAACTTTATATACATATTTTATATTTTATGTAAGTC
ATTTCGACTCACAATACTTATGACAAATCACCATCTATTCTGTACAATGT
TTTCCTTTTTACACCCTATGACCTTATCTATGGTACTTGATTCTTTTGTC
ATATCCTTTTTTGTCTTATGAAGACTAAAGGAGTATTTAATGATATGACT
GGATCTATTTCAAACACAAATGAGGACTCAGAGAGGCCAGATAGAGCTTT
GGGTGCTGCACGACCATGGCTGGATCCTAGGGTTAACATAAATGTATGTG
AAGTAATTTATCTTTTCTTCTTTATACTACTATTAAATCTGCTAATTGTC
ACATATTAATTTAATGGTGTATATTGCAGAATAATCAGCATACTCAAAGA
GATGTATTTCATGATTCTGTTCCTGAAAAGAGCATTGGTGGAGCCTATGG
AGACGATGAATATAATTCTACTGTTTCAAGTAATTTGGGCTCAGGTGTTG
GAAGAACTGGAAGTAGACTCATTGGCGGTGTTGCAGAGACCGTATCCGGG
CAAAGAAATGGTTTCAGCCTCAAACATAGTTTTTCAAGTCATGCAGCACC
GAAGTCTATGAATTTGAATGCACATCATCAGCCAACACAAACCATAACTA
ACGTAAGGAGCAGTGCAATGTCAAGTAACTGGAAAAATTCAGAGGAAGAG
GAGTTCATGTGGGATGAGATGAACTCTAGTTTGCCCGATCATGTACCCAA
TGTCTCTAGCAACTTGAGCACCGACCCGTGGATGGCCGATGACGACAATT
TGGTAAGTTGGCTACAATAAAGGGTCAATTGCACTTTGCACCACCTGTAC
TGCAAGTAATTTTATGGCAATATTAAGAAGGCCAATTCACCCTATCTGAT
TTTGATGAGAATGCTCCAAAAGAAATTTAGCTTGTCGCTTTTGGCACAGT
TAAAACTTAGAACATCTTTTATAGTCTTCTTTATGTCTTGAAAAGTCACC
TGTATGTATGTTCGGTCTAATTGGAAGAATCAATTACCAACTCGAAAGAT
GGTGGACAAATTAGAAAAGCATACTAAAGGAAGCGGCAACACGACAAAAT
GCAATGATAAAGTTTACTATGTCTAACGAAATAGGGTGGTAAAGTATAAC
TGGCAATGATAAAACTGTTGTATCAGATTGAGGTAGAACAGAGCTGGGGC
CAAGGAATGATGCATAGAAACAAAATAAAATGGCAATCACCTCTATGCAG
GACTCTTTCCCTTGGATATAGATAATATGCCTAATTTTGTTGACTTAAAA
ACCGCTTATTTAAATTCCAAATATCCTAATAAAACTAAGACATAGTTTCC
TAATTCAACTTGGCATAAGATATACTAGGACCCAAACAATTAAAGTATTA
AACACTAATTTCTGTAATTACTAACTTATATTTCATCCCTTCATTCTTCA
TCATAAATATTTCATATATATTTTATCTGATCTCGACTGATTTTGTTTTC
CACATGCAGGAAAGTGAAGATCAGCTCCAAATCACACACCCAATTGGAAC
AAAGGTTAATAGAAAAATGTCCACTGTTAAGAAACAACTACCGTCATCTG
GGGGTCATTCATCATTATCATGGGAGTTGCAGAAGCAGCTCCCAAGTGAC
AAATTGAATATGAAGTCGGGTCACTCAGAATTATTTGTTTCCGCTCCAAG
TAGCTTACCCAAGAATTCGAATGCGTTGGCTGGGAGGATGAGGAATCAGT
CTTTTATACCGCATACAACTATAGGAATGGGCAAAATTGTGGGACAGCAG
CAGTTTGATTCTGAGGGGGTCGAATCCCCTTCTGCACAGTCACCTCTGCG
ACAACAGTCTCCATCGGTGCCAGTAACCACACAACTCCCTCATTCAATGC
AAAATTTGGCTGAGCAAGATTGTCCACCAACTCTTAAAACATCTCAACAT
TTGGGTGGTCTGCAAAGTCAAAATATTAGAGATCCCGCACCTGCCTTCCG
TCCCAATGTTCAGGTTGGTAACTTGCGAAAATCACAGGAAAAGGACATGC
GGGGTCCACCATCTTCTGTAACTACTTTTCAGCCAAGACCTCAGCAACAG
CAGGCGGTGCCTTCACAGGCTGACATTAGTCTTAAAGCTAAGCAGCCACC
CAAGTCTAAAGTTTCTTTAGCAAAAGAAACTTCCGAAAAGTCAACCTCAA
AGAGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCCAAAAAATCA
ATTACTAGAAGTCTGGATGCAAGTAGCCGTCCATCTCAACAAGCGGCTAA
GCCTACTCGGTTAGGTGCTCCTTCCCCTACCACATTAATTTCTTCGGGGG
CTTCTGCTATGTCACTATCTTCAGTCGGTCCTCCAAATGATTATTCAGCT
ACTCTGCCAAAACTACCTAAAGGGAAGGCTGGAAAGCGGCAAAGAGATTC
TACTCAACCATCTGCTTCCTCTAAGGATTGCAGTGCATCAACTCCGAGCT
CAAATGCCACTAATAAGAATACCTTGAATCCAATTTCAAATCTTTTAAGC
TCATTAGTTGCTAAAGGTTTGATATCAGCAGGAACAGAGTCAGCAACTAC
AGTGTCAAGTGAGATGGTGATTCGATCGGAAGACCAAACTGAAAGCATTA
TTGTCAGTTCCACTTTGCCAGTTGCTTCAGTTCCTGTTTCTGCAGCTGTC
CCTGTACCGTCTTCCAGAGATGGGGTAGATGATGCTGCAAAAGCCTCACT
TGCCTTGTCCAAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTG
ATTTTAAACCTGATGTAATTCGAGAAATGCATCCAGATGTAATCACTGAA
TTATTGGATGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAA
ACAGCAAGAACAGTTAGATAGGCACTTGGAGTGGCATGCTACAAAAGAAA
GAGAACAAAATGGTCTGATTACGGCATCAAGAAGATGGTATGCAAAGTCA
AATGACTGGATTGCTGGCAAGGCCGAATATCTGTCTGAGTCCGAAATTGC
TGATTCCATGGATGCATATGATGAAAAAACAGATGAGAGTCAATTGGATT
CCATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAG
TTATTTGAAGATGTGTACTGTCAGGTAAGTGACCAGTGGATGTTCAAGGA
GGCTGTTTACTTGAACAACTCAGATAGCAATGACGAGATTGAAAGTAGAA
ATGTGGGCCCCATCATTCATGTTCGATGCTTATCGGAAAACTTAATGTCG
AGTGCGACCAATACAGTAAGGCTCATATTGAATTGAATGGATGTCTTCTA
ATTGATTTTTAAAGCTTCAATTAGTTTATTTGAAGGAATGTGTTAAAATG
TTTTGTAGTGATTGATTTGATTTGTTTTTTATGCAGGAACTTGATTAATA
CATTACGCTTATAGCATTGGACCGGAGGTAAAGTCAGAAGCTTCCCAAGG
GTTCCTAGGTTCTAGTTGCATACTATAACTAGATGGCCCTTCACAATTAA
AACTGTTGCCTCTGATTGCTCTCCATAGCAGTAAAACAAATTTTGTGCCC
TTTTTGTTTCATTTTCTTGTACTTGAGGGAAAAAAAATAGAAATTGCGCA
GTATTCAAAATATATAAATGTGAGATAGTTTTTTTTTGCAGCTAAACTTG
GTGTTTGATATGGTTGTGATAGCTTAATTTTACCATGATGATGAAGCGGA
TTTGTGCATTTAACGCATATGGGAATAATACAGAGGCTATGCCCCAATGC
CATCTTCATCCAAATGGCGGAT
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Coding sequence (CDS) from alignment at Ca_LG_3:40328480..40334701+

>Ca_07826.1_ICC4958_v2 ID=Ca_07826.1_ICC4958_v2; Name=Ca_07826.1; organism=Cicer arietinum; type=CDS; length=3096bp; location=Sequence derived from: Ca_LG_3:40328480..40334701+ (Cicer arietinum
ATGGATAGCACGCGTAGATCGTTGGATAGATCCAGAGAACCGGGCTCCAA
GAAGCCCAGATTGATCGATCTCAACTCCACCGCACGACCGTTTCCTCAGC
GGCAACATGGCTCTGGGGTTACTACAACGTTGTCTTCTTCTGCTAGGTTT
CAAATAAACGACAGAGACTCCGAAAGAAGCGATTTGGATCACGGTGGCGG
TGAGTATCACCCACAGCCACCGCCACATCAAGAACTCGTGACGCAGTATA
AGGCTGCACTTGCTGAACTCACTTTTAACTCGAAACCCATAATTACCAAC
TTGACTATAATTGCTGGAGAGAATCTTTCTGCTGCCATGTCAATTGCTGA
GACTGTTTGTACAAACATTCTAGAGGTTCCAAGTGACCAAAAGCTGCCAT
CGCTTTATCTCTTGGACAGCATTGTTAAGAATATTGGGCGGGACTACATA
AAATACTTCGCTGTTAGATTACCTGAGGTATTCTGCACGGCATACAGAGA
GGTTGACCCTCCTGTCCATTCAAGCATGAGGCATCTTTTTGGAACTTGGA
GAGGAGTCTTTCCTCCTCAGGACCTCCAGATAATTGAGAAGGAGCTCGGC
TTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCTACACTTAGAAG
TGATTCTCAGAGTCAACGCCCACCTCATAGCATCCATGTTAATCCCAAAT
ATTTAGAAAGACAACGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTATTT
AATGATATGACTGGATCTATTTCAAACACAAATGAGGACTCAGAGAGGCC
AGATAGAGCTTTGGGTGCTGCACGACCATGGCTGGATCCTAGGGTTAACA
TAAATAATAATCAGCATACTCAAAGAGATGTATTTCATGATTCTGTTCCT
GAAAAGAGCATTGGTGGAGCCTATGGAGACGATGAATATAATTCTACTGT
TTCAAGTAATTTGGGCTCAGGTGTTGGAAGAACTGGAAGTAGACTCATTG
GCGGTGTTGCAGAGACCGTATCCGGGCAAAGAAATGGTTTCAGCCTCAAA
CATAGTTTTTCAAGTCATGCAGCACCGAAGTCTATGAATTTGAATGCACA
TCATCAGCCAACACAAACCATAACTAACGTAAGGAGCAGTGCAATGTCAA
GTAACTGGAAAAATTCAGAGGAAGAGGAGTTCATGTGGGATGAGATGAAC
TCTAGTTTGCCCGATCATGTACCCAATGTCTCTAGCAACTTGAGCACCGA
CCCGTGGATGGCCGATGACGACAATTTGGAAAGTGAAGATCAGCTCCAAA
TCACACACCCAATTGGAACAAAGGTTAATAGAAAAATGTCCACTGTTAAG
AAACAACTACCGTCATCTGGGGGTCATTCATCATTATCATGGGAGTTGCA
GAAGCAGCTCCCAAGTGACAAATTGAATATGAAGTCGGGTCACTCAGAAT
TATTTGTTTCCGCTCCAAGTAGCTTACCCAAGAATTCGAATGCGTTGGCT
GGGAGGATGAGGAATCAGTCTTTTATACCGCATACAACTATAGGAATGGG
CAAAATTGTGGGACAGCAGCAGTTTGATTCTGAGGGGGTCGAATCCCCTT
CTGCACAGTCACCTCTGCGACAACAGTCTCCATCGGTGCCAGTAACCACA
CAACTCCCTCATTCAATGCAAAATTTGGCTGAGCAAGATTGTCCACCAAC
TCTTAAAACATCTCAACATTTGGGTGGTCTGCAAAGTCAAAATATTAGAG
ATCCCGCACCTGCCTTCCGTCCCAATGTTCAGGTTGGTAACTTGCGAAAA
TCACAGGAAAAGGACATGCGGGGTCCACCATCTTCTGTAACTACTTTTCA
GCCAAGACCTCAGCAACAGCAGGCGGTGCCTTCACAGGCTGACATTAGTC
TTAAAGCTAAGCAGCCACCCAAGTCTAAAGTTTCTTTAGCAAAAGAAACT
TCCGAAAAGTCAACCTCAAAGAGTCTTCCAGCTCCATCTGTGAAGAGTGG
AATCATCCCCAAAAAATCAATTACTAGAAGTCTGGATGCAAGTAGCCGTC
CATCTCAACAAGCGGCTAAGCCTACTCGGTTAGGTGCTCCTTCCCCTACC
ACATTAATTTCTTCGGGGGCTTCTGCTATGTCACTATCTTCAGTCGGTCC
TCCAAATGATTATTCAGCTACTCTGCCAAAACTACCTAAAGGGAAGGCTG
GAAAGCGGCAAAGAGATTCTACTCAACCATCTGCTTCCTCTAAGGATTGC
AGTGCATCAACTCCGAGCTCAAATGCCACTAATAAGAATACCTTGAATCC
AATTTCAAATCTTTTAAGCTCATTAGTTGCTAAAGGTTTGATATCAGCAG
GAACAGAGTCAGCAACTACAGTGTCAAGTGAGATGGTGATTCGATCGGAA
GACCAAACTGAAAGCATTATTGTCAGTTCCACTTTGCCAGTTGCTTCAGT
TCCTGTTTCTGCAGCTGTCCCTGTACCGTCTTCCAGAGATGGGGTAGATG
ATGCTGCAAAAGCCTCACTTGCCTTGTCCAAATCAACTAGCACAGAAATT
AGAAATCTCATTGGCTTTGATTTTAAACCTGATGTAATTCGAGAAATGCA
TCCAGATGTAATCACTGAATTATTGGATGAACTCCCACATCATTGCAGTA
ATTGTGGTATTAGGCTTAAACAGCAAGAACAGTTAGATAGGCACTTGGAG
TGGCATGCTACAAAAGAAAGAGAACAAAATGGTCTGATTACGGCATCAAG
AAGATGGTATGCAAAGTCAAATGACTGGATTGCTGGCAAGGCCGAATATC
TGTCTGAGTCCGAAATTGCTGATTCCATGGATGCATATGATGAAAAAACA
GATGAGAGTCAATTGGATTCCATGGTTGTAGCAGATGAAAACCAGTGCTT
GTGTGTATTGTGTGGCGAGTTATTTGAAGATGTGTACTGTCAGGTAAGTG
ACCAGTGGATGTTCAAGGAGGCTGTTTACTTGAACAACTCAGATAGCAAT
GACGAGATTGAAAGTAGAAATGTGGGCCCCATCATTCATGTTCGATGCTT
ATCGGAAAACTTAATGTCGAGTGCGACCAATACAGAACTTGATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006569CID_dom
IPR006903RNA_pol_II-bd
IPR008942ENTH_VHS
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding