Ca_08973.1, Ca_08973.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_08973.1
Unique NameCa_08973.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length2846
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_4supercontigCa_LG_4:11686849..11689694 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR310Pisum sativum Cameor genome v1aPisum sativum
caipsR331Pisum sativum Cameor genome v1aPisum sativum
caipvR0365Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0435Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0352Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0398Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0409Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0212Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0824Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1082Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1402Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL503Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiL507Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR343Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caizwsR370Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR349Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR345Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifR465Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR465Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR337Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR438Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0448Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0523Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR329Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR371Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0366Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0376Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_006830Cajanus cajan Asha genome v1.0Cajanus cajan
jg1774.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun07g094700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr07.2480Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat06G0147900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
LR48_mrnaVigan02g130600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat6g054200.1Pisum sativum Cameor genome v1aPisum sativum
Phvul.007G191700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_19787Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014655532.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Tiffany.R1.3g048200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.3g058200.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_32403Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004495026.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_08973Ca_08973_ICC4958_v2Cicer arietinumgene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08973.1.utr3p1Ca_08973.1.utr3p1_ICC4958_v2Cicer arietinumthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08973.1.cds3Ca_08973.1.cds3_ICC4958_v2Cicer arietinumCDS
Ca_08973.1.cds2Ca_08973.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_08973.1.cds1Ca_08973.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08973.1.exon3Ca_08973.1.exon3_ICC4958_v2Cicer arietinumexon
Ca_08973.1.exon2Ca_08973.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_08973.1.exon1Ca_08973.1.exon1_ICC4958_v2Cicer arietinumexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_08973.1.utr5p1Ca_08973.1.utr5p1_ICC4958_v2Cicer arietinumfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_08973.1_ICC4958_v2Ca_08973.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: Y1390_ARATH (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana OX=3702 GN=At1g03900 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.944e-107
Identity = 184/226 (81.42%), Postives = 198/226 (87.61%), Query Frame = 1 
Query:   28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFVFPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHK-TAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKIRSXXXXXXXXXVAARIASTG 702
            FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGR+RVVS +DRCEIRLED NSGDLFAACFV PG+RE SVEP LDSSRYFVL+I+DG+GK+AFIGLGFAERNEAFDFNVALSDHEKYVRRE +KE+G   ++ D+ IDIHPAVNHRLKEGETIRINVK K T  GTGMLSAA L+G    T KPK L LAPPP  AG  RSPLPPPPNDPVA+RIAS G
Sbjct:   12 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGETSES-DNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAA-LSG----TGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIASDG 231
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP2_HUMAN (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens OX=9606 GN=NECAP2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.489e-47
Identity = 93/214 (43.46%), Postives = 126/214 (58.88%), Query Frame = 1 
Query:   16 EDEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRR--EHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINV----KHKTAGGTGMLSAAGLTGGHAATPKP---KILNLAPPP 624
            E+  +E  L V  +V VY+IPPR T+ GY+  EW      WSGR+R+ ++     I+LED  SG+LFA   V  FPG    +VE V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V++  E  K++ N D          P ++   KEG+TI++N+    K + A G   +  A  TGG +  P P   K   L PPP
Sbjct:    2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGT---AVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG--------PKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPAS-TGGLSLLPPPPGGKTSTLIPPP 203
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP2_MOUSE (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus OX=10090 GN=Necap2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.280e-46
Identity = 92/211 (43.60%), Postives = 124/211 (58.77%), Query Frame = 1 
Query:   16 EDEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRR--EHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKH--KTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSG 630
            E+  +E  L V  EV VY+IPPR T+ GY+  EW      WSGR+R+ ++     I+LED  SG+LFA   V  FPG    +VE V DSSRYFV++IEDG G+ AFIGLGF +R +AFDFNVAL DH K+V++  E  K++ N D+         P ++   K+G+TI+IN+ +  K  G  G   A   + G         L+L PPP G
Sbjct:    2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGT---AVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG--------PKLDLGFKDGQTIKINIANMRKKEGAAGTPRARPTSAGG--------LSLLPPPPG 193
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP2_BOVIN (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus OX=9913 GN=NECAP2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.262e-46
Identity = 91/212 (42.92%), Postives = 123/212 (58.02%), Query Frame = 1 
Query:   16 EDEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRR--EHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVK--HKTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGA 633
            E+  +E  L V  +V VY+IPPR T+ GY+  EW      WSGR+R+ ++     I+LED  SG+LFA   V  FPG    +VE V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V++  E  K++ N D          P ++   KEG+TI++N+    K  G  G   A   + G         L+L PPP GA
Sbjct:    2 EEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGT---AVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG--------PKLDLSFKEGQTIKLNIASMKKKDGAAGTPRARPTSTGG--------LSLLPPPPGA 194
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP2_RAT (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Necap2 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 7.371e-46
Identity = 93/217 (42.86%), Postives = 127/217 (58.53%), Query Frame = 1 
Query:   16 EDEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRR--EHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKH--KTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKIRS 648
            E+  +E  L V  EV VY+IPPR T+ GY+  EW      WSGR+R+ ++     I+LED  SG+LFA   V  FPG    +VE V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V++  E  K++ N D+         P ++   KEG+TI+IN+ +  K  G  G       + G         L+L PPP G GK+ +
Sbjct:    2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGT---AVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG--------PKLDLGFKEGQTIKINIANMRKKEGAAGAPRTRPASAGG--------LSLLPPPPG-GKMST 198
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP1_RAT (Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Necap1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.931e-45
Identity = 87/209 (41.63%), Postives = 126/209 (60.29%), Query Frame = 1 
Query:   28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHKTA--GGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
            +E  L V  +VSVY+IPPR ++ GY+  +W      W+GR+R+ S+     I+LED  SG+LFA   V  +PG    +VE V DSSRYFV++I+DG G+ AFIG+GF +R +AFDFNV+L DH K+V++E +         E  ++D  P ++   KEG+TI++++ + TA  GGT    A+G  G     P P      PPPS +  I
Sbjct:    7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISK------ESQEMDSRPKLDLGFKEGQTIKLSIGNITAKKGGTSKPRASGTGGLSLLPPPPGGKVTIPPPSSSVAI 206
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP1_BOVIN (Adaptin ear-binding coat-associated protein 1 OS=Bos taurus OX=9913 GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.193e-45
Identity = 89/209 (42.58%), Postives = 129/209 (61.72%), Query Frame = 1 
Query:   28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHKTA--GGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
            +E  L V  +VSVY+IPPR ++ GY+  +W      W+GR+R+ S+     I+LED  SG+LFA   V  +PG    +VE V DSSRYFV++I+DG G+ AFIG+GF++R +AFDFNV+L DH K+V++E +         E  ++D  P ++   KEG+TI++++ + T   GGT     AG TGG         L+L PPP G GK+
Sbjct:    7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFNVSLQDHFKWVKQESEISK------ESQEMDSRPKLDLGFKEGQTIKLSIGNITTKKGGTSKPKTAG-TGG---------LSLLPPPPG-GKV 195
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP1_MOUSE (Adaptin ear-binding coat-associated protein 1 OS=Mus musculus OX=10090 GN=Necap1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.838e-44
Identity = 89/209 (42.58%), Postives = 129/209 (61.72%), Query Frame = 1 
Query:   28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHKTA--GGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
            +E  L V  +VSVY+IPPR ++ GY+  +W      W+GR+R+ S+     I+LED  SG+LFA   V  +PG    +VE V DSSRYFV++I+DG G+ AFIG+GF +R +AFDFNV+L DH K+V++E +         E  ++D  P ++   KEG+TI++++ + TA  GG     A+G TGG         L+L PPP G GK+
Sbjct:    7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISK------ESQEMDNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPRASG-TGG---------LSLLPPPPG-GKV 195
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECAP_DROME (NECAP-like protein CG9132 OS=Drosophila melanogaster OX=7227 GN=CG9132 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 9.065e-44
Identity = 81/207 (39.13%), Postives = 122/207 (58.94%), Query Frame = 1 
Query:   28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRINVKHKTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
            +E  L+V  EV +YKIPPR ++ GY+ G+W   +  W+GR+R+V++     ++LED  SG LFA C +  +PG    ++E V DSSRYFV++++D  G+ AF+GLGF +R+++FD NVAL DH K+V+        N +  E  + +    ++   KEGETI+IN++     G+   S  G   G +         L PPP G GKI
Sbjct:    3 YESVLIVKPEVFIYKIPPRASNRGYRAGDWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGV---AIEAVSDSSRYFVIRVQDDNGRSAFLGLGFGDRSDSFDLNVALQDHFKWVK--------NQEQIEKEKTEPKQELDLGFKEGETIKINMRITKKDGSEGSSRTGKNKGSSGV-------LPPPPGGLGKI 191
[Close]
BLAST of Ca_08973.1 vs. DB:Swiss
Match: NECP1_PONAB (Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii OX=9601 GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.346e-44
Identity = 87/210 (41.43%), Postives = 127/210 (60.48%), Query Frame = 1 
Query:   28 FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPNSGDLFAACFV--FPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAEDSQIDIHPAVNHRLKEGETIRI---NVKHKTAGGTGMLSAAGLTGGHAATPKPKILNLAPPPSGAGKI 642
            +E  L V  +VSVY+IPPR ++ GY+  +W      W+GR+R+ S+     I+LED  SG+LFA   V  +PG    +VE V DSSRYFV++I+DG G+ AFIG+GF +R +AFDFNV+L DH K+V++E +         E  ++D  P ++   KEG+TI++   N+ +K  G +   +A G  GG         L+L PPP G GK+
Sbjct:    7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESEISK------ESQEMDARPKLDLGFKEGQTIKLSIGNITNKEGGASKPRTARG--GG---------LSLLPPPPG-GKV 195
The following BLAST results are available for this feature:
BLAST of Ca_08973.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
Y1390_ARATH1.944e-10781.42Uncharacterized protein At1g03900 OS=Arabidopsis t... [more]
NECP2_HUMAN9.489e-4743.46Adaptin ear-binding coat-associated protein 2 OS=H... [more]
NECP2_MOUSE2.280e-4643.60Adaptin ear-binding coat-associated protein 2 OS=M... [more]
NECP2_BOVIN7.262e-4642.92Adaptin ear-binding coat-associated protein 2 OS=B... [more]
NECP2_RAT7.371e-4642.86Adaptin ear-binding coat-associated protein 2 OS=R... [more]
NECP1_RAT3.931e-4541.63Adaptin ear-binding coat-associated protein 1 OS=R... [more]
NECP1_BOVIN4.193e-4542.58Adaptin ear-binding coat-associated protein 1 OS=B... [more]
NECP1_MOUSE1.838e-4442.58Adaptin ear-binding coat-associated protein 1 OS=M... [more]
NECAP_DROME9.065e-4439.13NECAP-like protein CG9132 OS=Drosophila melanogast... [more]
NECP1_PONAB9.346e-4441.43Adaptin ear-binding coat-associated protein 1 OS=P... [more]
back to top
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012466NECAP, PHear domainPFAMPF07933DUF1681coord: 11..174
e-value: 5.6E-54
score: 181.9
IPR012466NECAP, PHear domainCDDcd13228PHear_NECAPcoord: 12..132
e-value: 1.84611E-74
score: 221.275
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 14..137
e-value: 5.9E-50
score: 170.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..226
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..273
NoneNo IPR availablePANTHERPTHR12847:SF13coord: 1..280
NoneNo IPR availablePANTHERPTHR12847ATP-BINDING CASSETTE ABC TRANSPORTER-RELATEDcoord: 1..280
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 7..136

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_08973.1_ICC4958_v2 ID=Ca_08973.1_ICC4958_v2; Name=Ca_08973.1; organism=Cicer arietinum; type=mRNA; length=2846bp
GTAAGACATGAAAATAAAGAAGATAGAGAAAGAGGATCATATTGGTAATG
CCATTGTATCTCCCAAAACAGTTGACATTGTGATAGTGTTGAGACAGACA
CCACAACGAACCAATCTTCATTTTGCAAAACCACTAATTAAACAACAACA
ACACCAAAACTAACTCCTCTCTCAAATTCACATTCACATTAAACTCAAAC
TCAAATTCAAACTCAAAACGCAACCAAAACGATGTCGTTAGAGGAAGAAG
ACGAGGCTTTCGAGCACACGCTACTAGTAGTGCGCGAAGTTTCCGTCTAC
AAGATCCCGCCGCGCACAACATCCGGCGGCTACAAGTGTGGCGAATGGCT
CCAATCCGATAAGATCTGGTCGGGTCGGATCCGAGTAGTATCGCGTCGTG
ACCGATGCGAGATCCGGTTAGAGGATCCGAACTCCGGCGATCTATTCGCC
GCGTGCTTCGTTTTCCCTGGTCAGCGTGAGGGTTCTGTAGAACCGGTTCT
CGATTCGTCTCGTTACTTTGTACTCAAGATCGAGGACGGACAAGGTAAGC
ACGCTTTCATTGGATTAGGGTTTGCGGAGAGGAACGAGGCTTTCGATTTC
AATGTTGCACTTTCTGATCACGAAAAGTATGTTCGGCGAGAGCATGATAA
GGAATCTGGTAACGCCGATGATGCCGAGGATTCTCAGATCGACATTCACC
CCGCCGTTAATCACAGGCTCAAGGTCTTGTATCAATCTAATTCTTCAGAT
TGTGTAGTTGAACTATAATTTAGTGTTGTGGTTATTATTATTATGATGAA
TTGTTTTCAATTTGAAGTTGAAAAATAGATGCTAATTGAAATCTTAGTGA
GATAAGTTTTATTTTAGTATGCTTAGATGATAGATGTAGTTCTTGTGTAC
TTTTGATTAGTATTAGTTTTTAAGCTAGAGTCAATGAAGCATGGTTTTAT
GTTGTAGTTAAGTGGATCATTGAGATGCTTGTGTTATGCTTATAATCTAT
GAGCACGAATACTAATACAATCACCAAACACGGTACTAACACTATTATGT
TGACACCACTATTAATTTGAGAAAATGAATTAATTGAATGTAATCAAGGT
GTCAGCGTCAGTGTTGTGTCGGTCTCGGACACCAATTCGATTAGAGGTGT
TGGTGTTATGGAGCTTATAATTATTACTTTATGTTATTATTATGATGATG
GTGAATTGTTCAAGGTTGGTTTGGTTCGGCCAAACCCGATTTTTAGAGCA
GTTTGTAATTGTGTTTTTTTTGTTTCTTAAACAATGTTTTAAATCATGGT
CGCGATCGCACCACGATACTTGATGTAGCAGACGGCCGTGGTCAAATAGG
GCCGATGTGGCCTCAATTGTTCTTGCGGAGACATCAAAATTAAAAAAGCT
TGATGTTGCAACCCGGATCGTGGACCTTTTTTTGAAACATGGTTCACAAG
CATGGTTTTCCTTGTGGGTATTTTTCTCCCAGTTAACCCTCCCCTTCTCT
TCATCATCCAAAATTTAGATGGATTTACTTTCTCTTCTGTTAACTGTGTT
TTTATATTTCCCCCTACAAATCATGGCTTTTCCTATATTTGATGTATTTG
TTAATTGGCCTGTAGGAAGGGGAAACCATCAGGATTAATGTGAAGCACAA
GACGGCTGGTGGAACTGGCATGCTTTCAGCTGCTGGCCTAACGGGTGGGC
ATGCAGCAACTCCGAAGCCTAAAATATTAAACCTTGCTCCCCCACCAAGC
GGAGCAGGAAAAATCAGATCTCCTCTTCCACCCCCACCGAATGATCCTGT
TGCTGCTCGGATTGCTTCTACCGGTCCTGGATCTAGTCTTAAAGGGACAC
ACGAAGTTGTGAGACATTCTACTGATTCTCTATCAGATCTTTCTCAACTG
CAGGTATGCTGATCCTGCTCACTCTGTCATTTCTTATTTGCACTTTTTTG
TTTCCCTAATTGAACATTTTAGAGCTTGCAAATTATTGCATGGATGGACA
GCAACATTGTTTCGTTTAGATTATTTGAAGATAATTCTGATAAAATCTAA
TTTTAAAGATTTCGTCTGATCTAATTTTGATACTCCGGTTGGAATTTATT
ACTTTTCTTTACAAGGCAGCATAACAGCGTAGTGGTACTCTATTTACTCT
GCTAATTAAGTACTAATAAAGTCAACACTTAATAGTATGAATACTAACCG
CAATTCTTTGTTTATGTATATAAATATAATGCAACAATTCTGGCAGTTTT
GTTTATTGGGTTGTAGTTTCCGATTGTGGTTATCAATCTAGATTCCGACA
AAAAGTGACTTCTGATTTGAATAACAAGCGATTATATTGGTTATCCACAT
CTGTGATCTTGTGATTTCCAGTTTAATTTCCCTATATGTGTTGCAGTCCC
AGATACCGTCTAAAATAAATCATTTGTAACATATCTCATGTTTGCATTTA
CAGAAGAATCTTCCCTCATCAGCCACTCCTGGATCAGCAACTGCGTCAGG
ATGGGCAGCCTTCTGATTATATATACGAGTATATTAACTATGAGGCTTTT
ATTATTCGCTGATTTTTTTGGGGTTCTTCATTTTAAGAAAAGAAATAGTG
GAGGAAACTGAAGAAAGAGGTGTCATAAGTATAGTTAGCAAAAGATACCG
AGTAATTCGATACCTTGAGGAATGTTCTGGAAATATCTATGTTTTTTTCC
TTGGTTTGTAATAACAGGTTTCTATATCCGTATGAAATTAATTTCTCCCC
GATTCCTTGATTCTCCCTATCTTTCTTGATTGAGGTGTACTTAATATTTT
TCTTGTTCAAAGCACTATTCCTGATGCATGTCATCAACCATCAATC
back to top

protein sequence of Ca_08973.1_ICC4958_v2

>Ca_08973.1_ICC4958_v2 ID=Ca_08973.1_ICC4958_v2; Name=Ca_08973.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=280bp
MSLEEEDEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRI
RVVSRRDRCEIRLEDPNSGDLFAACFVFPGQREGSVEPVLDSSRYFVLKI
EDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGNADDAED
SQIDIHPAVNHRLKEGETIRINVKHKTAGGTGMLSAAGLTGGHAATPKPK
ILNLAPPPSGAGKIRSPLPPPPNDPVAARIASTGPGSSLKGTHEVVRHST
DSLSDLSQLQKNLPSSATPGSATASGWAAF
back to top

mRNA from alignment at Ca_LG_4:11686849..11689694-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_08973.1_ICC4958_v2 ID=Ca_08973.1_ICC4958_v2; Name=Ca_08973.1; organism=Cicer arietinum; type=mRNA; length=2846bp; location=Sequence derived from: Ca_LG_4:11686849..11689694- (Cicer arietinum
GTAAGACATGAAAATAAAGAAGATAGAGAAAGAGGATCATATTGGTAATG
CCATTGTATCTCCCAAAACAGTTGACATTGTGATAGTGTTGAGACAGACA
CCACAACGAACCAATCTTCATTTTGCAAAACCACTAATTAAACAACAACA
ACACCAAAACTAACTCCTCTCTCAAATTCACATTCACATTAAACTCAAAC
TCAAATTCAAACTCAAAACGCAACCAAAACGATGTCGTTAGAGGAAGAAG
ACGAGGCTTTCGAGCACACGCTACTAGTAGTGCGCGAAGTTTCCGTCTAC
AAGATCCCGCCGCGCACAACATCCGGCGGCTACAAGTGTGGCGAATGGCT
CCAATCCGATAAGATCTGGTCGGGTCGGATCCGAGTAGTATCGCGTCGTG
ACCGATGCGAGATCCGGTTAGAGGATCCGAACTCCGGCGATCTATTCGCC
GCGTGCTTCGTTTTCCCTGGTCAGCGTGAGGGTTCTGTAGAACCGGTTCT
CGATTCGTCTCGTTACTTTGTACTCAAGATCGAGGACGGACAAGGTAAGC
ACGCTTTCATTGGATTAGGGTTTGCGGAGAGGAACGAGGCTTTCGATTTC
AATGTTGCACTTTCTGATCACGAAAAGTATGTTCGGCGAGAGCATGATAA
GGAATCTGGTAACGCCGATGATGCCGAGGATTCTCAGATCGACATTCACC
CCGCCGTTAATCACAGGCTCAAGGTCTTGTATCAATCTAATTCTTCAGAT
TGTGTAGTTGAACTATAATTTAGTGTTGTGGTTATTATTATTATGATGAA
TTGTTTTCAATTTGAAGTTGAAAAATAGATGCTAATTGAAATCTTAGTGA
GATAAGTTTTATTTTAGTATGCTTAGATGATAGATGTAGTTCTTGTGTAC
TTTTGATTAGTATTAGTTTTTAAGCTAGAGTCAATGAAGCATGGTTTTAT
GTTGTAGTTAAGTGGATCATTGAGATGCTTGTGTTATGCTTATAATCTAT
GAGCACGAATACTAATACAATCACCAAACACGGTACTAACACTATTATGT
TGACACCACTATTAATTTGAGAAAATGAATTAATTGAATGTAATCAAGGT
GTCAGCGTCAGTGTTGTGTCGGTCTCGGACACCAATTCGATTAGAGGTGT
TGGTGTTATGGAGCTTATAATTATTACTTTATGTTATTATTATGATGATG
GTGAATTGTTCAAGGTTGGTTTGGTTCGGCCAAACCCGATTTTTAGAGCA
GTTTGTAATTGTGTTTTTTTTGTTTCTTAAACAATGTTTTAAATCATGGT
CGCGATCGCACCACGATACTTGATGTAGCAGACGGCCGTGGTCAAATAGG
GCCGATGTGGCCTCAATTGTTCTTGCGGAGACATCAAAATTAAAAAAGCT
TGATGTTGCAACCCGGATCGTGGACCTTTTTTTGAAACATGGTTCACAAG
CATGGTTTTCCTTGTGGGTATTTTTCTCCCAGTTAACCCTCCCCTTCTCT
TCATCATCCAAAATTTAGATGGATTTACTTTCTCTTCTGTTAACTGTGTT
TTTATATTTCCCCCTACAAATCATGGCTTTTCCTATATTTGATGTATTTG
TTAATTGGCCTGTAGGAAGGGGAAACCATCAGGATTAATGTGAAGCACAA
GACGGCTGGTGGAACTGGCATGCTTTCAGCTGCTGGCCTAACGGGTGGGC
ATGCAGCAACTCCGAAGCCTAAAATATTAAACCTTGCTCCCCCACCAAGC
GGAGCAGGAAAAATCAGATCTCCTCTTCCACCCCCACCGAATGATCCTGT
TGCTGCTCGGATTGCTTCTACCGGTCCTGGATCTAGTCTTAAAGGGACAC
ACGAAGTTGTGAGACATTCTACTGATTCTCTATCAGATCTTTCTCAACTG
CAGGTATGCTGATCCTGCTCACTCTGTCATTTCTTATTTGCACTTTTTTG
TTTCCCTAATTGAACATTTTAGAGCTTGCAAATTATTGCATGGATGGACA
GCAACATTGTTTCGTTTAGATTATTTGAAGATAATTCTGATAAAATCTAA
TTTTAAAGATTTCGTCTGATCTAATTTTGATACTCCGGTTGGAATTTATT
ACTTTTCTTTACAAGGCAGCATAACAGCGTAGTGGTACTCTATTTACTCT
GCTAATTAAGTACTAATAAAGTCAACACTTAATAGTATGAATACTAACCG
CAATTCTTTGTTTATGTATATAAATATAATGCAACAATTCTGGCAGTTTT
GTTTATTGGGTTGTAGTTTCCGATTGTGGTTATCAATCTAGATTCCGACA
AAAAGTGACTTCTGATTTGAATAACAAGCGATTATATTGGTTATCCACAT
CTGTGATCTTGTGATTTCCAGTTTAATTTCCCTATATGTGTTGCAGTCCC
AGATACCGTCTAAAATAAATCATTTGTAACATATCTCATGTTTGCATTTA
CAGAAGAATCTTCCCTCATCAGCCACTCCTGGATCAGCAACTGCGTCAGG
ATGGGCAGCCTTCTGATTATATATACGAGTATATTAACTATGAGGCTTTT
ATTATTCGCTGATTTTTTTGGGGTTCTTCATTTTAAGAAAAGAAATAGTG
GAGGAAACTGAAGAAAGAGGTGTCATAAGTATAGTTAGCAAAAGATACCG
AGTAATTCGATACCTTGAGGAATGTTCTGGAAATATCTATGTTTTTTTCC
TTGGTTTGTAATAACAGGTTTCTATATCCGTATGAAATTAATTTCTCCCC
GATTCCTTGATTCTCCCTATCTTTCTTGATTGAGGTGTACTTAATATTTT
TCTTGTTCAAAGCACTATTCCTGATGCATGTCATCAACCATCAATC
back to top

Coding sequence (CDS) from alignment at Ca_LG_4:11686849..11689694-

>Ca_08973.1_ICC4958_v2 ID=Ca_08973.1_ICC4958_v2; Name=Ca_08973.1; organism=Cicer arietinum; type=CDS; length=843bp; location=Sequence derived from: Ca_LG_4:11686849..11689694- (Cicer arietinum
ATGTCGTTAGAGGAAGAAGACGAGGCTTTCGAGCACACGCTACTAGTAGT
GCGCGAAGTTTCCGTCTACAAGATCCCGCCGCGCACAACATCCGGCGGCT
ACAAGTGTGGCGAATGGCTCCAATCCGATAAGATCTGGTCGGGTCGGATC
CGAGTAGTATCGCGTCGTGACCGATGCGAGATCCGGTTAGAGGATCCGAA
CTCCGGCGATCTATTCGCCGCGTGCTTCGTTTTCCCTGGTCAGCGTGAGG
GTTCTGTAGAACCGGTTCTCGATTCGTCTCGTTACTTTGTACTCAAGATC
GAGGACGGACAAGGTAAGCACGCTTTCATTGGATTAGGGTTTGCGGAGAG
GAACGAGGCTTTCGATTTCAATGTTGCACTTTCTGATCACGAAAAGTATG
TTCGGCGAGAGCATGATAAGGAATCTGGTAACGCCGATGATGCCGAGGAT
TCTCAGATCGACATTCACCCCGCCGTTAATCACAGGCTCAAGGAAGGGGA
AACCATCAGGATTAATGTGAAGCACAAGACGGCTGGTGGAACTGGCATGC
TTTCAGCTGCTGGCCTAACGGGTGGGCATGCAGCAACTCCGAAGCCTAAA
ATATTAAACCTTGCTCCCCCACCAAGCGGAGCAGGAAAAATCAGATCTCC
TCTTCCACCCCCACCGAATGATCCTGTTGCTGCTCGGATTGCTTCTACCG
GTCCTGGATCTAGTCTTAAAGGGACACACGAAGTTGTGAGACATTCTACT
GATTCTCTATCAGATCTTTCTCAACTGCAGAAGAATCTTCCCTCATCAGC
CACTCCTGGATCAGCAACTGCGTCAGGATGGGCAGCCTTCTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012466NECAP_PHear
IPR011993PH-like_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006897endocytosis