Ca_09063.1, Ca_09063.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_09063.1
Unique NameCa_09063.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length3158
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_4supercontigCa_LG_4:12743124..12746281 +Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR310Pisum sativum Cameor genome v1aPisum sativum
caipsR331Pisum sativum Cameor genome v1aPisum sativum
caipvR0365Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0458Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0352Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0397Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0375Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0392Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0802Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1007Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1319Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1402Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL507Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR343Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caizwsR370Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR349Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR345Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifR465Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR464Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivfhR465Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR337Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR390Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0448Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0523Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR329Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR371Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0366Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0376Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan02g116900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_24606Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_001781Cajanus cajan Asha genome v1.0Cajanus cajan
jg2030.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun07g110500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr07.2651Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.3g064680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.3g053720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat6g060400.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_014655805.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.007G171700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat06G0169500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004495149.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_09063Ca_09063_ICC4958_v2Cicer arietinumgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_09063.1.utr5p1Ca_09063.1.utr5p1_ICC4958_v2Cicer arietinumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_09063.1.exon1Ca_09063.1.exon1_ICC4958_v2Cicer arietinumexon
Ca_09063.1.exon2Ca_09063.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_09063.1.exon3Ca_09063.1.exon3_ICC4958_v2Cicer arietinumexon
Ca_09063.1.exon4Ca_09063.1.exon4_ICC4958_v2Cicer arietinumexon
Ca_09063.1.exon5Ca_09063.1.exon5_ICC4958_v2Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_09063.1.cds1Ca_09063.1.cds1_ICC4958_v2Cicer arietinumCDS
Ca_09063.1.cds2Ca_09063.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_09063.1.cds3Ca_09063.1.cds3_ICC4958_v2Cicer arietinumCDS
Ca_09063.1.cds4Ca_09063.1.cds4_ICC4958_v2Cicer arietinumCDS
Ca_09063.1.cds5Ca_09063.1.cds5_ICC4958_v2Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_09063.1_ICC4958_v2Ca_09063.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 286/468 (61.11%), Postives = 361/468 (77.14%), Query Frame = 1
Query:   97 DTLGRRLLSLVYPKRSAVIAINKWKEEGHVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELKMNTSPDIVTFNLLLTACASVNDVETAERVLLELKKAKVDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLKEMEKRTCRKTRVAYSSLLSLHTNMGNVDEVNRIWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDRGLMEMAEIFCNQLEQKGVSLSYTTWEVFTMGYLKKKDVNKFLYYFRKAISSVKKWIPNDMLVQEAFTVIQEQSHIEGAEQLLAILRDAGHVNTNVYNLFLKTYAAAGKMPLIVTERMKKDNVQLDEETHRLLDLTSKM 1500
            DTLG RLLSLVY KRSAV+ I KWKEEGH + RKY+LNR++RELRK KRYKHALE+CEWM +Q DIKL  GDYAVHLDLI+K+RGLNSAEKFFED+PD+MRG   CT+LLH+YVQN L+DKAEA+  KM ECGFL+S +PYN M+S+YIS G+ EKVP L +ELK+ TSPDIVT+NL LTA AS NDVE AE+V L+ K+ K++PDWVT+S LTNLY      K D +EKA   LKEMEK   +K RVAY+SL+SLH N+G+ D VN  W K+K  F+KMND EY+ MIS+++KLG+F   + LY EWESVSGT D R+ NL+L  Y++R  + + E F  ++ +KG++ SY+TWE+ T  YLK+KD+ K L  F KAI SVKKW  N  LV+ A   ++EQ +++GAE+L+ +L+ AG+VNT +YN  L+TYA AG+M LIV ERM KDNV+LDEET  L+ LTS+M
Sbjct:   61 DTLGGRLLSLVYTKRSAVVTIRKWKEEGHSV-RKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEKLNPDWVTYSVLTNLY-----AKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELIRLTSQM 522          
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana OX=3702 GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 7.463e-83
Identity = 152/446 (34.08%), Postives = 257/446 (57.62%), Query Frame = 1
Query:  181 HVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELKM-NTSPDIVTFNLLLTACASVNDVETAERVLLELKK-AKVDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLKEMEKRTCRKTRVAYSSLLSLHTNMGNVDEVNRIWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDRGLMEMAEIFCNQLEQKGVSLSYTTWEVFTMGYLKKKDVNKFLYYFRKAISSVK----KWIPNDMLVQEAFTVIQEQSHIEGAEQLLAILRDA-GHVNTNVYNLFLKTYAAAGKMPLIVTERMKKDNVQLDEETHRLLDLTSK 1497
            HV   K+++   I++LR    Y  AL++ E M+ +   K V  D A+HLDL+ K R + + E +F DLP+  + + T  +LL+ Y +  L +KAE ++ KM E     S + YN +M+LY   G+ EKVP + +ELK  N  PD  T+N+ + A A+ ND+   ERV+ E+ +  +V PDW T+S + ++Y+ +A +     +KA   L+E+E +  ++   AY  L++L+  +G + EV RIW  ++    K ++  Y+ MI  L+KL D  G E L+KEW++   T D+R+ N+L+ +Y   GL++ A     +  ++G  L+  TWE+F   Y+K  D+ + L    KA+S  K    KW+P+   V+   +  +++  + GAE LL IL++   ++   ++   ++TYAAAGK    +  R+K +NV+++E T +LLD  S+
Sbjct:   52 HVF--KWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTV-SDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYV-DAGLS----QKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLLDEVSQ 489          
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana OX=3702 GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 3.824e-77
Identity = 141/419 (33.65%), Postives = 241/419 (57.52%), Query Frame = 1
Query:  133 PKRSAVIAINKWKEEGHVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQND-IKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELKM-NTSPDIVTFNLLLTACASVNDVETAERVLLELKK-AKVDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLKEMEKRTCRKTRVAYSSLLSLHTNMGNVDEVNRIWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDRGLMEMAEIFCNQLEQKGVSLSYTTWEVFTMGYLKKKDVNKFLYYFRKAISS--VKKWIPNDMLVQEAFTVIQEQSHIEGAEQLLAILRDAGHVNTNVY 1374
            P+  A   +N+W++ G  L  K++L R+++ELRK KR   ALEV +WM  + +  +L   D A+ LDLI KVRG+  AE+FF  LP+  + +    +LL+AYV+    +KAEA++  M + G+   P+P+N MM+LY++  + +KV  +  E+K  +   DI ++N+ L++C S+  VE  E V  ++K    + P+W TFST+  +YI+         EKA   L+++E R   + R+ Y  LLSL+ ++GN  E+ R+W+  K     + +  Y  ++SSL+++GD  G E +Y+EW  V  + D R+ NLL+ +YV    +E AE   + + + G   S +TWE+  +G+ +K+ +++ L   R A S+     W P  +++   F + +E+S +   E +L +LR +G +    Y
Sbjct:   79 PELGAASVLNQWEKAGRKLT-KWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGET-----EKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSY 491          
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 4.364e-71
Identity = 152/444 (34.23%), Postives = 240/444 (54.05%), Query Frame = 1
Query:   97 DTLGRRLLSLVYPKRSAVIAINKWKEEGHVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELKMNT-SPDIVTFNLLLTACASVNDVETAERVLLELKKAK-VDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLKEMEKRT-CRKTRVAYSSLLSLHTNMGNVDEVNRIWN---KMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDRGLMEMAEIFCNQLEQKGVSLSYTTWEVFTMGYLKKKDVNKFLYYFRKAISSVK-KWIPNDMLVQEAFTVIQEQSHIEGAEQLLAILRDAGHVNTNVYNLFLKTYAAAG 1407
            DTL RR+     P  S +  ++ W ++G+ L +  +L+ +I+ LRK  R+ HAL++ +WM      ++ EGD A+ LDLI KV GL  AEKFFE +P + R      ALL+ Y    +  KAE +  +M E GFL+  +PYN M++LY+  GK   V KL  E++  T  PDI T N  L A + V+DVE  E+ L+  +  + +  DW T++   N Y     IK    EKA   L++ E+    +K + AY  L+S +   G  +EV R+W+   ++ G +    +  YI +IS+LLK+ D   VE + +EWE+     D+R+ +LL+T Y  +G+ME AE   N L QK      +TWE   +GY     + K +  +++AI   K  W P+ +++      ++ Q  +EG  ++L +L + GH++   Y+  L     AG
Sbjct:   38 DTLQRRVARSGDPSASIIKVLDGWLDQGN-LVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGY-----IKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFY----NTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHIS---YDQLLYDMNGAG 468          
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana OX=3702 GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.706e-65
Identity = 145/448 (32.37%), Postives = 238/448 (53.12%), Query Frame = 1
Query:  133 PKRSAVIAINKWKEEGHVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDK---MR-GQPTCTALLHAYVQNNLADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELKMNTSP-DIVTFNLLLTACASVNDVETAERVLLELKKAK-VDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLKEMEKRTCRKTRVAYSSLLSLHTNMGNVDEVNRIWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDRGLMEMAEIFCNQLEQKGVSLSYTTWEVFTMGYLKKKDVNKFLYYFRKAISSVKK--WIPNDMLVQEAFTVIQEQSHIEGAEQLLAILRDAGHVNTNVYNLFLKTYAAAGKMPLIVTERMKKDNV 1452
            P+RS    + +  + GH +    +L  + + L ++ RY  AL++ EWM+ Q DI+    D A+ LDLI K  GL   E++FE L      MR  +     LL AYV+N +  +AEA+M K++  GFL +P P+N MM LY ++G+ EKV  +   +K N  P +++++NL + AC  V+ V   E V  E+   K V+  W +  TL N+YI     K    EKA   L++ EK   R  R+ Y  L++L+ ++GN + V R+W   K    +++   YIC++SSL+K GD    E ++ EWE+     DVRVSN+LL +YV  G +  AE     + ++G + +Y TWE+   G++K +++ K +    +    +++  W P+  +V       +++  IE A   +  L   G  +  +Y L L+ +  A +    + E MK D +
Sbjct:   50 PRRSVTSLLQERIDSGHAVSLS-ELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYI-----KSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491          
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.920e-64
Identity = 138/471 (29.30%), Postives = 242/471 (51.38%), Query Frame = 1
Query:  100 TLGRRLLSLVYPKRSAVIAINKWKEEGHVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELK-MNTSPDIVTFNLLLTACASVNDVETAERVLLEL-KKAKVDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLKEMEKRTCRKTRVAYSSLLSLHTNMGNVDEVNRIWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDRGLMEMAEIFCNQLEQKGVSLSYTTWEVFTMGYLKKKDVNKFLYYFRKAIS---SVKKWIPNDMLVQEAFTVIQEQSHIEGAEQLLAILRDAGHVNTNVYNLFLKT-YAAAGKMPLIVTERMKKDNVQLDEETHRLLDLTS 1494
            TL  ++  L  PK S    +  W + G  +    +L R++ +LR+ KR+ HALEV +WM           ++AVHLDLI +V G  +AE++FE+L ++ +   T  ALL+ YV+    +K+     KM E GF+ S + YN +M LY + G+ EKVPK+ EE+K  N +PD  ++ + + A  ++ D+E     L ++ ++  +  DW T++     YI       DC ++A   LK  E R  +K    Y+ L++L+  +G   EV R+W+  K   ++  +++Y+ ++ SL+K+      E +  EW+S     D RV N ++  Y+ + + E AE     L ++G + +  +WE+    Y +K  +       + A+      +KW P   LV    + + ++  ++  E  +A LR+   VN  +Y+  +K      G+    + +RMK D +++DEET  +L   S
Sbjct:   26 TLYSKISPLGDPKSSVYPELQNWVQCGKKVSVA-ELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGG----DC-DRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVILSTRS 490          
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 7.944e-63
Identity = 137/445 (30.79%), Postives = 239/445 (53.71%), Query Frame = 1
Query:  157 INKWKEEGHVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELKMNT-SPDIVTFNLLLTACASVNDVETAERVLLELK-KAKVDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLKEMEKRTCRKTRVAYSSLLSLHTNMGNVDEVNRIWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDRGLMEMAEIFCNQLEQKGVSLSYTTWEVFTMGYLKKKDVNKFLYYFRKAI-SSVKKWIPNDMLVQEAFTVIQEQSHIEGAEQLLAILRDAGHVNTNVYNLFLKTYAAAGKMPLIVTERMKKDNVQLDEETHRLL 1482
            +N++  EG V  +K+ L R  ++LRK ++ + ALE+ EWM+ + +I     D+A+ L+LI K +GL +AE +F  L D ++ Q T  +LL+ Y       KA+A    M +   + + +P+N +M++Y+  G+ EKVP L   +K  + +P  +T+++ + +C S+ D++  E+VL E+K + +    W TF+ L  +YI     K     KA   LK +E       R  Y  L++L+T + N  EV R+W+ +K  +  +N+  Y+ M+ +L KL D  GV+ ++ EWES   T D+R++N+ ++SY+ + + E AE   N   +K         ++  M  LK    +  L +F  A+    K W  +  L+   F   +E   ++GAE+    L     +++  Y L +KTY AAGK    + +R+++  + +DEE   LL
Sbjct:   60 LNQFVMEG-VPVKKHDLIRYAKDLRKFRQPQRALEIFEWME-RKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYI-----KVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 497          
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g09450 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 9.347e-63
Identity = 125/344 (36.34%), Postives = 199/344 (57.85%), Query Frame = 1
Query:   97 DTLGRRLLSLVYPKRSAVIAINKWKEEGHVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLADKAEAIMLKMSECGFLQ-SPIPYNRMMSLYISNGKLEKVPKLFEELKM-NTSPDIVTFNLLLTACASVNDVETAERVLLELKK-AKVDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLK-EMEKRTCRKTRVAYSSLLSLHTNMGNVDEVNRIWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEW-ESVSGTNDVRVSNLLLTSYVDRGLMEMAEIF 1113
            D L  R+  L  PKRSA   + KW  EG+ +    +L  + +ELR+ +RYKHALEV EWM    + K+ + DYA  +DLI+KV G+++AE++FE L    +   T T+LLHAY  +   ++AEA+  ++ E   L    I YN MM+LY+S G++EKVP++ E LK    SPDI T+NL L++CA+  +++   ++L E++  A  +  WV +  LT++YI ++ + +     A STL  E EK   ++  + Y  L+ LHT +GN   +++IW  ++   + ++   YIC++SS L LG     E +  +W ES +   D      +L ++ D GL  +A  F
Sbjct:   55 DDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTIN-ELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTN-----AESTLPVEAEKSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGIASGF 392          
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.283e-57
Identity = 133/449 (29.62%), Postives = 234/449 (52.12%), Query Frame = 1
Query:  157 INKWKEEGHVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDL-PDKMRGQPTCTALLHAYVQNNLADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELKM-NTSPDIVTFNLLLTACASVNDVETAERVLLEL-KKAKVDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLKEMEKRTCRKTRVAYSSLLSLHTNMGNVDEVNRIWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDRGLMEMAEIFCNQLEQKGVSLSYTTWEVFTMGYLKKKDVNKFLYYFRKAISSVK----KWIPNDMLVQEAFTVIQEQSHIEGAEQLLAILRDAGHVNTNVYNLFLKTYAAAGKMPLIVTERMKKDNVQLDEETHRLL 1482
            +N++  EG +  RK  L R  + LRK +R +HA E+ +WM+ +  +     D+A+ LDLI K +GL +AE +F +L P     Q T  AL++ Y      +KA+A    M E  F+ + +P+N MMS+Y+   + EKVP L + +K    SP  VT+++ + +C S+ND++  E+++ E+ K ++    W TFS L  +Y      K    EKA S LK ME++     R ++  L+SL+  +    EV R+W  +K    ++N+  Y+ M+ ++ KLGD  G++ ++ EWES     D+R++N+ + +Y+   + E AE   +   +K         ++  +  L+    +  + +   A+S       +W  +  LV   F   ++   ++GAE    IL +   +++      +KTYAAA K    + ER+ +  +++ EE   LL
Sbjct:   91 LNQFIMEG-ITVRKDDLFRCAKTLRKFRRPQHAFEIFDWME-KRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYT-----KAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLL 532          
BLAST of Ca_09063.1 vs. DB:Swiss
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana OX=3702 GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.352e-44
Identity = 116/341 (34.02%), Postives = 178/341 (52.20%), Query Frame = 1
Query:  112 RLLSLVYPKRSAVIAINKWKEEG-HVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLA-DKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELKMN-TSPDIVTFNLLLTACASVNDVETAERVLLELKKAK-VDPDWVTFSTLTNLYIRNASIKDDCLEKAASTLKEMEKRTCRKT-RVAYSSLLSLHTNMGNVDEVNRIWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDRGLMEMAEIFCN 1119
            R+   ++     +  + +W+++G  V P   ++  +I++LR + +   AL+V EWM  +    L+  D+A  L LI  V GL  AEKFFE +P   RG    T+LL++Y +++    KAEA   KM + G L  P+PYN MMSLY +    EKV +L  E+K N    D VT N +L   ++V DV   E+ L + +    +  +W T   +   Y+R  S       KA   L+  E+   +K+ + AY  L+ L+   GN +EV R+W   K    + ++  Y  +I SLLK+ D  G E +YK WES+    D R+  +L + Y DRG+ E AE   N
Sbjct:   41 RITDALHRNAQIIPVLEQWRQQGNQVNPSHVRV--IIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSG-----KAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMN 374          

HSP 2 Score: 68.9366 bits (167), Expect = 5.770e-11
Identity = 39/118 (33.05%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  214 MIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQN--NLADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLE 561
            +I+ LR +K++  AL+V EWM  +    L   DYA  L L   V GL  AEK+FE++P+ M+      ALL +Y ++  NL +  + I+ +M E       I  N ++ +Y +  K++
Sbjct:  406 LIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEKYFENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKVYAAESKIQ 523          
The following BLAST results are available for this feature:
BLAST of Ca_09063.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
PP302_ARATH0.000e+061.11Pentatricopeptide repeat-containing protein At4g02... [more]
PPR86_ARATH7.463e-8334.08Pentatricopeptide repeat-containing protein At1g60... [more]
PPR3_ARATH3.824e-7733.65Pentatricopeptide repeat-containing protein At1g02... [more]
PP166_ARATH4.364e-7134.23Pentatricopeptide repeat-containing protein At2g20... [more]
PP400_ARATH3.706e-6532.37Pentatricopeptide repeat-containing protein At5g27... [more]
PP334_ARATH8.920e-6429.30Pentatricopeptide repeat-containing protein At4g21... [more]
PP300_ARATH7.944e-6330.79Pentatricopeptide repeat-containing protein At4g01... [more]
PP372_ARATH9.347e-6336.34Pentatricopeptide repeat-containing protein At5g09... [more]
PPR4_ARATH2.283e-5729.62Pentatricopeptide repeat-containing protein At1g02... [more]
PPR61_ARATH2.352e-4434.02Putative pentatricopeptide repeat-containing prote... [more]
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 47..198
e-value: 2.9E-12
score: 48.5
coord: 199..253
e-value: 2.1E-8
score: 35.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 372..509
e-value: 1.6E-5
score: 26.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 254..346
e-value: 2.3E-10
score: 42.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 205..239
e-value: 1.7E-4
score: 19.5
coord: 137..166
e-value: 4.3E-4
score: 18.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 199..249
e-value: 6.7E-9
score: 35.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 137..166
e-value: 7.4E-4
score: 19.6
coord: 280..307
e-value: 0.013
score: 15.7
coord: 173..198
e-value: 9.3E-4
score: 19.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 238..277
score: 5.81
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 348..382
score: 7.651
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 203..237
score: 10.238
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 65..99
score: 5.557
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 278..308
score: 7.487
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 169..199
score: 8.013
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 313..343
score: 5.974
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 134..168
score: 8.046
NoneNo IPR availablePANTHERPTHR45717FAMILY NOT NAMEDcoord: 10..503
NoneNo IPR availablePANTHERPTHR45717:SF29coord: 10..503

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_09063.1_ICC4958_v2 ID=Ca_09063.1_ICC4958_v2; Name=Ca_09063.1; organism=Cicer arietinum; type=mRNA; length=3158bp
TCTGAGTTCGTAGTTGGGGTTTAACAACTTAACTCAAGGTCAAGGTGCAC
TTGAGTTGACATTCTCTAGTTATACCAATATGTCGCTTCGTTCCCTCCGA
AGATACTTCGCCACCGTTCGCCATTTCTCTACAGAACCAGCAAGAAGAGC
CGCCGCCAACCCCGGCGCCGGTGCAGACACGCTGGGACGTAGACTTTTAA
GCCTCGTATACCCTAAACGCAGCGCCGTTATCGCCATCAATAAATGGAAG
GAAGAAGGTCACGTGCTCCCTCGCAAGTACCAGCTCAATCGCATGATTCG
TGAGCTTCGTAAGAACAAGCGCTACAAACACGCGCTCGAGGTTCGTTCTG
TCCACGCGTTTTCTCATTTTAATCAACCATTCAATTAGTTCGAATTTGAT
TCCATATGCACTGATATGTATATGTATATATTTTTGATAGTCCACATTTG
AAGTATATGGTTTGCGCACTATAAATTTGTAGGTGCTTCATAGCTCTGTG
TACACCTGATTGTGAAAATGGTTGATTAGAATTGAAATTGAGAATTTCCG
ACGATTGGCTTCTTTGTATGTTAGGGATTCTGAACATGTTGAGAAATTTA
GTGTATATTATTGGATGGAGTGATTGAAGTTTTTTTTTTGTTATTGCAAA
TGCAGGTATGCGAATGGATGAAATTGCAAAATGATATCAAACTAGTGGAA
GGAGACTATGCTGTTCACTTGGACTTGATAACCAAAGTTCGTGGTTTAAA
CAGTGCAGAAAAATTCTTTGAGGATCTTCCTGATAAGATGAGAGGCCAAC
CAACCTGCACTGCCCTTCTTCACGCATATGTACAAAATAATTTGGCTGAC
AAAGCAGAGGCCATCATGTTGAAAATGTCGGAATGTGGTTTCTTGCAAAG
TCCTATTCCTTATAATCGCATGATGTCTCTCTACATATCAAATGGGAAGC
TAGAAAAGGTTCCTAAACTTTTTGAGGAACTAAAGATGAACACTTCACCA
GATATTGTTACCTTCAATTTATTGTTAACTGCTTGTGCCTCGGTAAATGA
TGTTGAGACTGCAGAAAGAGTACTACTTGAGTTAAAGAAGGCGAAAGTAG
ACCCGGACTGGGTAACATTTAGTACATTGACCAATTTGTACATAAGAAAT
GCTAGCATAAAGGATGATTGCCTTGAAAAAGCAGCATCTACTTTGAAAGA
GATGGAGAAGAGAACCTGTCGGAAAACTCGAGTTGCATATTCCTCTCTCT
TGAGTTTGCATACAAACATGGGGAATGTGGATGAAGTTAATCGGATATGG
AATAAAATGAAGGGTTGCTTTCGCAAAATGAATGACGAGGAATACATTTG
CATGATATCATCGCTTTTGAAGCTTGGAGACTTTGCCGGAGTTGAGAACC
TCTATAAAGAGTGGGAATCTGTGTCCGGTACCAATGATGTCAGAGTTTCA
AATTTACTTCTTACTTCATATGTTGATCGAGGCCTGATGGAAATGGCTGA
AATTTTTTGTAATCAGTTAGAGCAAAAGGGTGTCTCTCTTTCTTACACTA
CATGGGAAGTATTTACAATGGGGTATTTGAAAAAGAAGGACGTAAACAAA
TTTCTGTATTATTTTAGGAAAGCTATTTCTAGTGTGAAAAAATGGATTCC
CAATGACATGTTAGTACAAGAAGCATTCACGGTCATCCAGGAGCAATCTC
ATATTGAAGGAGCAGAACAATTGTTGGCTATCCTTCGGGATGCTGGACAT
GTGAATACAAATGTATATAACTTATTTCTGAAAACTTATGCAGCAGCTGG
TAAAATGCCTCTCATTGTCACTGAGAGGATGAAAAAGGACAATGTTCAGT
TGGATGAAGAGACACATAGGCTCTTGGATCTAACCAGTAAAATGTGTGTG
GGAGATGTTTCGGGGTTTCTGTCCTAACCACACATTGAAGGAGTCTTAAG
ATAAACTGGAGGCTGAAATGTTTTTTGGCTGCAGTTTTATGTACTGACCA
ATCTCATTTCTGTCCTAAGCACTCATTGAAGGAGTGTTAAAATAAATTGG
GAGGCATAAATGTTTTTGGCTTCAATTTTATGCTGTATCCATCCCTACAA
TAATTGGATCATTAGTATTTGTGAATGTAATATTTTTTGCAATGCTACTG
ATTTTGAAGTCAAGTACTGAACCTTGATTTTAGAGGCAAAATCAGATGAA
CTCCTCGCCTCTATACTTCAATTTATTCCTGATGACATGTTGTCGGCTTG
TTATGATTGTTTTCTTCCTGAGTTGGTTCTTTGAGGGGCTATAGTCCAAC
TTGTCACAAATTCACAATTTCATTGCCCTGGTTTGATCTACTTATGGACA
AGCCGCTGCTGATCTTGATGCCAACCAGTAAGCTTCCGAAATTTGTGGAA
ATTGGTTAAGTTTCTACTTCTCATTGATTCTCTAACATGGTGGAGGAAAT
GCTGTTTCCCAATCCACTTTCAACATATGATTTTCCAGTTCATTTCCTTA
TGTAACTACAGGTTTTTTTTCAGAGAATCAGTAGTGTTGTAATTACTTGC
ATGACCGCCTACCCCATTTAAGATGGGAGTGTTGTCGACCTAAATATCGA
GTCTGAATGTGTGGTGCTATCTAAGGTGAGGGAGGATAAAAGTCCCTCAC
CTGTGAAGCACGGCATAGGTATACCATATATAGCCATTAGATGATAAAAT
ATTAGGCACTCCAAGTCTTTTACATAATACTTCTGATGAGAGATTTGCAA
AGAAGTTCATTTCACCCGAACATCAAAGTCACAGTGTGAATGGTATAAAT
TCAAAAACAAGAACCCTAGCCATCATGAAATACGCCATCAATGATAGATC
TGTTGCACATTGTCATCAGTGTACCTAGCTATGTGGTAAAGCAGTTCTGC
CAAAGCCACCAAATTCACCAGTTAATGTTGAAGGAATCATTATTATTACA
CAGCAGTTACATTGGATTCACCTGTTGAAGAACCATTGGCGACAAGATTT
TAAAAATTCTGATTTGCAGTGCTGTTCACTTTGATCACAATAATTCCATA
ATCCGTTCTGATAACCATAATGACAACTTGTAAGATTTGGGATATGATTG
TTTCTACTCTTTTGAAGACCCTCATGTTGTATCCTTCCCCGAGTTCTCCA
ATGTATGA
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protein sequence of Ca_09063.1_ICC4958_v2

>Ca_09063.1_ICC4958_v2 ID=Ca_09063.1_ICC4958_v2; Name=Ca_09063.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=575bp
MSLRSLRRYFATVRHFSTEPARRAAANPGAGADTLGRRLLSLVYPKRSAV
IAINKWKEEGHVLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKL
VEGDYAVHLDLITKVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNL
ADKAEAIMLKMSECGFLQSPIPYNRMMSLYISNGKLEKVPKLFEELKMNT
SPDIVTFNLLLTACASVNDVETAERVLLELKKAKVDPDWVTFSTLTNLYI
RNASIKDDCLEKAASTLKEMEKRTCRKTRVAYSSLLSLHTNMGNVDEVNR
IWNKMKGCFRKMNDEEYICMISSLLKLGDFAGVENLYKEWESVSGTNDVR
VSNLLLTSYVDRGLMEMAEIFCNQLEQKGVSLSYTTWEVFTMGYLKKKDV
NKFLYYFRKAISSVKKWIPNDMLVQEAFTVIQEQSHIEGAEQLLAILRDA
GHVNTNVYNLFLKTYAAAGKMPLIVTERMKKDNVQLDEETHRLLDLTSKM
GYSPTCHKFTISLPWFDLLMDKPLLILMPTNGSVVDLNIESECVVLSKVR
EDKSPSPVKHGIDPHVVSFPEFSNV
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mRNA from alignment at Ca_LG_4:12743124..12746281+

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_09063.1_ICC4958_v2 ID=Ca_09063.1_ICC4958_v2; Name=Ca_09063.1; organism=Cicer arietinum; type=mRNA; length=3158bp; location=Sequence derived from: Ca_LG_4:12743124..12746281+ (Cicer arietinum
TCTGAGTTCGTAGTTGGGGTTTAACAACTTAACTCAAGGTCAAGGTGCAC TTGAGTTGACATTCTCTAGTTATACCAATATGTCGCTTCGTTCCCTCCGA AGATACTTCGCCACCGTTCGCCATTTCTCTACAGAACCAGCAAGAAGAGC CGCCGCCAACCCCGGCGCCGGTGCAGACACGCTGGGACGTAGACTTTTAA GCCTCGTATACCCTAAACGCAGCGCCGTTATCGCCATCAATAAATGGAAG GAAGAAGGTCACGTGCTCCCTCGCAAGTACCAGCTCAATCGCATGATTCG TGAGCTTCGTAAGAACAAGCGCTACAAACACGCGCTCGAGGTTCGTTCTG TCCACGCGTTTTCTCATTTTAATCAACCATTCAATTAGTTCGAATTTGAT TCCATATGCACTGATATGTATATGTATATATTTTTGATAGTCCACATTTG AAGTATATGGTTTGCGCACTATAAATTTGTAGGTGCTTCATAGCTCTGTG TACACCTGATTGTGAAAATGGTTGATTAGAATTGAAATTGAGAATTTCCG ACGATTGGCTTCTTTGTATGTTAGGGATTCTGAACATGTTGAGAAATTTA GTGTATATTATTGGATGGAGTGATTGAAGTTTTTTTTTTGTTATTGCAAA TGCAGGTATGCGAATGGATGAAATTGCAAAATGATATCAAACTAGTGGAA GGAGACTATGCTGTTCACTTGGACTTGATAACCAAAGTTCGTGGTTTAAA CAGTGCAGAAAAATTCTTTGAGGATCTTCCTGATAAGATGAGAGGCCAAC CAACCTGCACTGCCCTTCTTCACGCATATGTACAAAATAATTTGGCTGAC AAAGCAGAGGCCATCATGTTGAAAATGTCGGAATGTGGTTTCTTGCAAAG TCCTATTCCTTATAATCGCATGATGTCTCTCTACATATCAAATGGGAAGC TAGAAAAGGTTCCTAAACTTTTTGAGGAACTAAAGATGAACACTTCACCA GATATTGTTACCTTCAATTTATTGTTAACTGCTTGTGCCTCGGTAAATGA TGTTGAGACTGCAGAAAGAGTACTACTTGAGTTAAAGAAGGCGAAAGTAG ACCCGGACTGGGTAACATTTAGTACATTGACCAATTTGTACATAAGAAAT GCTAGCATAAAGGATGATTGCCTTGAAAAAGCAGCATCTACTTTGAAAGA GATGGAGAAGAGAACCTGTCGGAAAACTCGAGTTGCATATTCCTCTCTCT TGAGTTTGCATACAAACATGGGGAATGTGGATGAAGTTAATCGGATATGG AATAAAATGAAGGGTTGCTTTCGCAAAATGAATGACGAGGAATACATTTG CATGATATCATCGCTTTTGAAGCTTGGAGACTTTGCCGGAGTTGAGAACC TCTATAAAGAGTGGGAATCTGTGTCCGGTACCAATGATGTCAGAGTTTCA AATTTACTTCTTACTTCATATGTTGATCGAGGCCTGATGGAAATGGCTGA AATTTTTTGTAATCAGTTAGAGCAAAAGGGTGTCTCTCTTTCTTACACTA CATGGGAAGTATTTACAATGGGGTATTTGAAAAAGAAGGACGTAAACAAA TTTCTGTATTATTTTAGGAAAGCTATTTCTAGTGTGAAAAAATGGATTCC CAATGACATGTTAGTACAAGAAGCATTCACGGTCATCCAGGAGCAATCTC ATATTGAAGGAGCAGAACAATTGTTGGCTATCCTTCGGGATGCTGGACAT GTGAATACAAATGTATATAACTTATTTCTGAAAACTTATGCAGCAGCTGG TAAAATGCCTCTCATTGTCACTGAGAGGATGAAAAAGGACAATGTTCAGT TGGATGAAGAGACACATAGGCTCTTGGATCTAACCAGTAAAATGTGTGTG GGAGATGTTTCGGGGTTTCTGTCCTAACCACACATTGAAGGAGTCTTAAG ATAAACTGGAGGCTGAAATGTTTTTTGGCTGCAGTTTTATGTACTGACCA ATCTCATTTCTGTCCTAAGCACTCATTGAAGGAGTGTTAAAATAAATTGG GAGGCATAAATGTTTTTGGCTTCAATTTTATGCTGTATCCATCCCTACAA TAATTGGATCATTAGTATTTGTGAATGTAATATTTTTTGCAATGCTACTG ATTTTGAAGTCAAGTACTGAACCTTGATTTTAGAGGCAAAATCAGATGAA CTCCTCGCCTCTATACTTCAATTTATTCCTGATGACATGTTGTCGGCTTG TTATGATTGTTTTCTTCCTGAGTTGGTTCTTTGAGGGGCTATAGTCCAAC TTGTCACAAATTCACAATTTCATTGCCCTGGTTTGATCTACTTATGGACA AGCCGCTGCTGATCTTGATGCCAACCAGTAAGCTTCCGAAATTTGTGGAA ATTGGTTAAGTTTCTACTTCTCATTGATTCTCTAACATGGTGGAGGAAAT GCTGTTTCCCAATCCACTTTCAACATATGATTTTCCAGTTCATTTCCTTA TGTAACTACAGGTTTTTTTTCAGAGAATCAGTAGTGTTGTAATTACTTGC ATGACCGCCTACCCCATTTAAGATGGGAGTGTTGTCGACCTAAATATCGA GTCTGAATGTGTGGTGCTATCTAAGGTGAGGGAGGATAAAAGTCCCTCAC CTGTGAAGCACGGCATAGGTATACCATATATAGCCATTAGATGATAAAAT ATTAGGCACTCCAAGTCTTTTACATAATACTTCTGATGAGAGATTTGCAA AGAAGTTCATTTCACCCGAACATCAAAGTCACAGTGTGAATGGTATAAAT TCAAAAACAAGAACCCTAGCCATCATGAAATACGCCATCAATGATAGATC TGTTGCACATTGTCATCAGTGTACCTAGCTATGTGGTAAAGCAGTTCTGC CAAAGCCACCAAATTCACCAGTTAATGTTGAAGGAATCATTATTATTACA CAGCAGTTACATTGGATTCACCTGTTGAAGAACCATTGGCGACAAGATTT TAAAAATTCTGATTTGCAGTGCTGTTCACTTTGATCACAATAATTCCATA ATCCGTTCTGATAACCATAATGACAACTTGTAAGATTTGGGATATGATTG TTTCTACTCTTTTGAAGACCCTCATGTTGTATCCTTCCCCGAGTTCTCCA ATGTATGA
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Coding sequence (CDS) from alignment at Ca_LG_4:12743124..12746281+

>Ca_09063.1_ICC4958_v2 ID=Ca_09063.1_ICC4958_v2; Name=Ca_09063.1; organism=Cicer arietinum; type=CDS; length=1728bp; location=Sequence derived from: Ca_LG_4:12743124..12746281+ (Cicer arietinum
ATGTCGCTTCGTTCCCTCCGAAGATACTTCGCCACCGTTCGCCATTTCTC
TACAGAACCAGCAAGAAGAGCCGCCGCCAACCCCGGCGCCGGTGCAGACA
CGCTGGGACGTAGACTTTTAAGCCTCGTATACCCTAAACGCAGCGCCGTT
ATCGCCATCAATAAATGGAAGGAAGAAGGTCACGTGCTCCCTCGCAAGTA
CCAGCTCAATCGCATGATTCGTGAGCTTCGTAAGAACAAGCGCTACAAAC
ACGCGCTCGAGGTATGCGAATGGATGAAATTGCAAAATGATATCAAACTA
GTGGAAGGAGACTATGCTGTTCACTTGGACTTGATAACCAAAGTTCGTGG
TTTAAACAGTGCAGAAAAATTCTTTGAGGATCTTCCTGATAAGATGAGAG
GCCAACCAACCTGCACTGCCCTTCTTCACGCATATGTACAAAATAATTTG
GCTGACAAAGCAGAGGCCATCATGTTGAAAATGTCGGAATGTGGTTTCTT
GCAAAGTCCTATTCCTTATAATCGCATGATGTCTCTCTACATATCAAATG
GGAAGCTAGAAAAGGTTCCTAAACTTTTTGAGGAACTAAAGATGAACACT
TCACCAGATATTGTTACCTTCAATTTATTGTTAACTGCTTGTGCCTCGGT
AAATGATGTTGAGACTGCAGAAAGAGTACTACTTGAGTTAAAGAAGGCGA
AAGTAGACCCGGACTGGGTAACATTTAGTACATTGACCAATTTGTACATA
AGAAATGCTAGCATAAAGGATGATTGCCTTGAAAAAGCAGCATCTACTTT
GAAAGAGATGGAGAAGAGAACCTGTCGGAAAACTCGAGTTGCATATTCCT
CTCTCTTGAGTTTGCATACAAACATGGGGAATGTGGATGAAGTTAATCGG
ATATGGAATAAAATGAAGGGTTGCTTTCGCAAAATGAATGACGAGGAATA
CATTTGCATGATATCATCGCTTTTGAAGCTTGGAGACTTTGCCGGAGTTG
AGAACCTCTATAAAGAGTGGGAATCTGTGTCCGGTACCAATGATGTCAGA
GTTTCAAATTTACTTCTTACTTCATATGTTGATCGAGGCCTGATGGAAAT
GGCTGAAATTTTTTGTAATCAGTTAGAGCAAAAGGGTGTCTCTCTTTCTT
ACACTACATGGGAAGTATTTACAATGGGGTATTTGAAAAAGAAGGACGTA
AACAAATTTCTGTATTATTTTAGGAAAGCTATTTCTAGTGTGAAAAAATG
GATTCCCAATGACATGTTAGTACAAGAAGCATTCACGGTCATCCAGGAGC
AATCTCATATTGAAGGAGCAGAACAATTGTTGGCTATCCTTCGGGATGCT
GGACATGTGAATACAAATGTATATAACTTATTTCTGAAAACTTATGCAGC
AGCTGGTAAAATGCCTCTCATTGTCACTGAGAGGATGAAAAAGGACAATG
TTCAGTTGGATGAAGAGACACATAGGCTCTTGGATCTAACCAGTAAAATG
GGCTATAGTCCAACTTGTCACAAATTCACAATTTCATTGCCCTGGTTTGA
TCTACTTATGGACAAGCCGCTGCTGATCTTGATGCCAACCAATGGGAGTG
TTGTCGACCTAAATATCGAGTCTGAATGTGTGGTGCTATCTAAGGTGAGG
GAGGATAAAAGTCCCTCACCTGTGAAGCACGGCATAGACCCTCATGTTGT
ATCCTTCCCCGAGTTCTCCAATGTATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding