Ca_15021.1, Ca_15021.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview


Name	Ca_15021.1
Unique Name	Ca_15021.1_ICC4958_v2
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	4236

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca_LG_5	supercontig	Ca_LG_5:43991462..43995697 +	Cicer arietinum ICC 4958 genome v2	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum ICC 4958 genome v2	2015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)	2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot	2019-05-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caipvR0543	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
caipvR0660	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
caivuR0599	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caivuR0614	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caiccR0615	Cajanus cajan Asha genome v1.0	Cajanus cajan
caiccR0643	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaiL0373	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiL0440	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiL0894	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascaiL655	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
caizwsR510	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
caizwsR609	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
caitifR553	Vicia faba cv. Tiffany genome v1.0	Vicia faba
caivfhR554	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
caitifR597	Vicia faba cv. Tiffany genome v1.0	Vicia faba
caivfhR595	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
caivrvR500	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
caivrvR546	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
caivssR0629	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
caivssR0690	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
caivuaR548	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
caivuaR609	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
caicanR0521	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
caicanR0563	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
LR48_mrnaVigan04g213500	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vigun09g204700.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_014646353.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
jg55465.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-KK1_039121	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vfaba.Hedin2.R1.2g187400.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
rna-TanjilR_13986	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_07898	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
evm.model.Chr09.1656.1.62122c07	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-XM_014648579.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vfaba.Tiffany.R1.2g151160.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Psat05G0097100-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Phvul.009G097300.6	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-XM_004501228.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Ca_15021	Ca_15021_ICC4958_v2	Cicer arietinum	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15021.1.utr5p1	Ca_15021.1.utr5p1_ICC4958_v2	Cicer arietinum	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15021.1.exon1	Ca_15021.1.exon1_ICC4958_v2	Cicer arietinum	exon
Ca_15021.1.exon2	Ca_15021.1.exon2_ICC4958_v2	Cicer arietinum	exon
Ca_15021.1.exon3	Ca_15021.1.exon3_ICC4958_v2	Cicer arietinum	exon
Ca_15021.1.exon4	Ca_15021.1.exon4_ICC4958_v2	Cicer arietinum	exon
Ca_15021.1.exon5	Ca_15021.1.exon5_ICC4958_v2	Cicer arietinum	exon
Ca_15021.1.exon6	Ca_15021.1.exon6_ICC4958_v2	Cicer arietinum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15021.1.cds1	Ca_15021.1.cds1_ICC4958_v2	Cicer arietinum	CDS
Ca_15021.1.cds2	Ca_15021.1.cds2_ICC4958_v2	Cicer arietinum	CDS
Ca_15021.1.cds3	Ca_15021.1.cds3_ICC4958_v2	Cicer arietinum	CDS
Ca_15021.1.cds4	Ca_15021.1.cds4_ICC4958_v2	Cicer arietinum	CDS
Ca_15021.1.cds5	Ca_15021.1.cds5_ICC4958_v2	Cicer arietinum	CDS
Ca_15021.1.cds6	Ca_15021.1.cds6_ICC4958_v2	Cicer arietinum	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15021.1.utr3p1	Ca_15021.1.utr3p1_ICC4958_v2	Cicer arietinum	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Ca_15021.1_ICC4958_v2	Ca_15021.1_ICC4958_v2	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of Ca_15021.1 vs. DB:Swiss
Match: TIF8_ARATH (Protein TIFY 8 OS=Arabidopsis thaliana OX=3702 GN=TIFY8 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.318e-54
Identity = 157/414 (37.92%), Postives = 207/414 (50.00%), Query Frame = 1

Query:   94 VLHDFLGMK----PSDTSADVRLPE-----------TSVSASSAGARGPFSTTSETVSEKQVG-NHLEGVPFYGPRSDFTGTEISNRLVGNKRSNSDSSFMGSSRDAFQMVPDSFQNSHLMKVLRNAFGGERSRRPNDDEVLHAMQSMKPSSSSQIFHPPSTTKLDANKWERSILTNIGPSMQHPPRGGQLMTPLAHQLASNKIRDTNAGPSFISQSAADEGSRTGIKGPGVLSSINTSATATDKISSAVLLGGSRPKPLTNIVESFTPPS---QHGLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKTTAKLTNESNLHSGENETGLVSNVAFTQ-------EHHGKLSVTGSSSRAVGGLGDRVST-PAGVHQGSIFA--KDTRNPVQAADPSSE 1248
            + HDFLG K     S + AD RLP            ++ SASSAG  G  S+TS+ V     G NHL+G+  +GPRSD +G+ +SNR  GNKRSNSDS F        Q  P++    H  K+LRN  G                                           S   N+ P    PPRGG  ++ L HQL++++ +D N GPS I+Q+AADEGSRTG+KGPG+LSS                       P ++ +ESF P +   +  L S+++QMTIFYGGQAHVFDDVHP+KADVIMALAGS+GGSWST  S K  +K    +N   G  + G +     ++       E   + S   +SS        R+ T P   HQGSI +  +D R+PV  +DP  E
Sbjct:   27 LFHDFLGSKNPTLASTSMADHRLPPDNKAAKAAMTPSTASASSAGGLGGLSSTSDLVERHSGGGNHLDGIQLFGPRSDVSGSIMSNRFSGNKRSNSDSHF------TTQEHPETL---HWSKLLRNGPG-------------------------------------------SFSMNVNPLANQPPRGGGQISHLLHQLSTSRFKDENVGPSVIAQTAADEGSRTGMKGPGILSSFTM--------------------PNSSKLESFAPSNTGNRKDLASSTKQMTIFYGGQAHVFDDVHPNKADVIMALAGSSGGSWSTGLSHKPKSK----NNTSDGPYKLGQMYEGGSSKETPQMPPEFRARPSHQPTSSAC-----HRIFTQPGREHQGSIISRGRDIRDPVHRSDPEKE 359

The following BLAST results are available for this feature:

BLAST of Ca_15021.1 vs. DB:Swiss

BLAST of Ca_15021.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
TIF8_ARATH	5.318e-54	37.92	Protein TIFY 8 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

InterPro

Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010399	Tify domain	SMART	SM00979	tify_2	coord: 290..325 e-value: 2.7E-15 score: 66.8
IPR010399	Tify domain	PFAM	PF06200	tify	coord: 292..324 e-value: 3.5E-15 score: 55.0
IPR010399	Tify domain	PROSITE	PS51320	TIFY	coord: 290..325 score: 15.511
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 373..421
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..117
None	No IPR available	PANTHER	PTHR33077:SF8	PROTEIN TIFY 8	coord: 63..420
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	FAMILY NOT NAMED	coord: 63..420

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Ca_LG_5:43991462..43995697+
coding sequence from alignment at Ca_LG_5:43991462..43995697+

mRNA sequence

>Ca_15021.1_ICC4958_v2 ID=Ca_15021.1_ICC4958_v2; Name=Ca_15021.1; organism=Cicer arietinum; type=mRNA; length=4236bp
ACAGAGTCTCTAAGATTATTAAACAACAGAGACATACATACGCCCATTAA
TATCAACACAAAACACAACAACAACATTTTCTGTAACAAATTAGAAAGAA
AAAAAATAACCTTTTTCTTTTTCTCTCTCTTCATCCCAGCTATGCAGCAG
AGTGAAATGGGTTTACCATGGCGTTACTAAGAATGGTTCAATCTCACTCT
CACTCTCAGCACAACAACAACAACAACGACAACGGTGGGACCCACCACTT
GCTCAATCCAGTACTCCATGATTTTCTCGGCATGAAACCATCTGATACTT
CCGCCGATGTTAGGTTACCGGAGACATCAGTCTCAGCTTCCTCCGCCGGT
GCACGTGGCCCTTTTTCCACCACCTCTGAAACTGTTTCTGGTAAGTCTTC
AAAATATAAAAGCTTTCATTTTTAGGTACATTACCCTTTGCCCATTAACC
CCTTTTTGGTTACTTGCTCTTTTTTTTTTTTTTAGTTAATTGATTCTTAT
TCACTAATGTTCTCTACTTTCCATTTTTATCTCTAAATGGGGTATCAGCA
ATATCATCACTTTTATTTGGTTGTGTTCTGTTGGTCTTTTATTTTTTCAA
CATTTTTTTGGATTTGGTTTGTTTTTGTTTCCTTAATTATCTAATGATTA
GGCTTTCATGTGATGTTGTTTTAAGTTAATTGAAGCTCTTTTTTTTTTTC
CTTTCTTTTTCTGTATGGTGTATGATTTAATTATCTGTTTCCATGAAATA
ATTGAGAGTGGAGAATCGAATTTAATCATTTTGTGCTGAAAGGGAAAATT
GTTAAATTACCATTGTTTTGAGAAGAAAACCTTTTTATGTCCTGTCAATG
TTTGGGCATTTGGTACTATAATGATATGAATTTTTAGGTATTTTTCATAA
TTTTTTTTTTGTGAAACTGTGTTGGTCTTTTTTCCTTTTTTGGTTTCTTA
GTGTGTGTTTGATCTGCAGTGACAAAAATTGATTTCGAATGAATTGCTTC
TGTAAAGTTAATTATGACTAAATGCTTGCGTAAATTCATGTAAAAGTGAG
TTGAATTATAAATTCCAGACTAAAAATCAATTCTTGAAGCAAAAACTACA
AATTGTAGCTTCAAGTTAGAATCAATATTAGAAGATAACTAAATATGTCA
AAATCAATTTTACACCTCTAAAATCAATTTTGACACATTCAAAAGTAGAG
CCAAACTTATTCCATAAATGTGCTTTCTTAATTATTCCATAAAAAGTTGT
AATTGAAAACACATTATTTATGGGAAGTTTCTATATATTCTTTAAAGGGA
ATGTAATGTTTTTCCCCTCATCAATTTGGTAGAAAAGCAGGTAGGGAATC
ATCTTGAGGGAGTTCCATTCTATGGCCCAAGAAGTGATTTTACTGGCACT
GAGATAAGTAACAGACTAGTGGGGAACAAGAGAAGTAATTCTGATTCTTC
TTTTATGGGTTCCTCCAGAGATGCCTTCCAAATGGTCCCTGACTCCTTTC
AAAACTCACATTTGATGAAGGTTACTTTCAACTATCATTTAATTCTACTC
CAATATATTCAATAGTTTAATTTTTTACACTAGTCAGTGTAAAAACTTTT
ACATTGTCAACAAATCATAACCAAACATACGTGTGATTTTAGAAGTAGTT
ATGATTAATGTCAAATGTTTTTAATAATTTGACAATTATGATTAATTGAC
AGTGTAAAAATTCTTTACACAGATCGTGTATATGAAATAAATCATATTCA
ATAACCAAAAAAGAAACATACTTTTTGCTTTTGTATTCTTTTCTTTGATG
TCTTAAGTCCTGTTTTTGTGCAGGTCCTCCGAAATGCGTTTGGCGGAGAG
AGGTCTAGAAGGCCTAATGACGATGAAGTGTTACATGCTATGCAGTCAAT
GAAGCCATCTTCTAGTTCTCAGATATTTCATCCTCCATCCACCACTAAGC
TTGATGCAAACAAATGGGAACGGTCTATTCTCACGAACATTGGCCCTTCT
ATGCAGCATCCTCCGCGTGGAGGGCAGTTGATGACTCCTCTTGCACACCA
ATTAGCTTCAAATAAGATTAGGGATACCAATGCCGGTCCTTCATTTATCT
CTCAGTCTGCTGCTGATGAAGGATCAAGAACCGGAATCAAAGGCCCCGGA
GTTTTAAGTTCCATAAACACATCTGCTACTGCTACTGATAAAATTTCATC
TGCAGTGCTACTCGGCGGAAGCAGGCCAAAACCTCTAACGAATATAGTAG
AATCATTCACACCCCCAAGGTGAATCTTTTTCATAAATACAGTTGTTCAA
CTCCCTTTGTTTATTTTTATTTTCACTCCCTTTAATTTGGGCAAAAAGTA
GTAGACTGACTTTATGCATTTTGGTATTGATGGCAGTCAACACGGGCTAA
CATCTGCCAGCCGCCAGATGACTATTTTTTACGGAGGTCAAGCGCATGTT
TTTGATGATGTCCACCCACATAAGGTCTGACCTCCTATTCTTAACACGTC
ATATTTGCTTACTGCATTTAGTGAGATAAGGTCTGAAATTAGTTTGGATC
TGTGAACCATCACGAAAAACAGTTTGTGCCTTAAAATTTTTGTCTGTGGT
TGATTTAATAATTATTCAATCTATTACTCAAACTGTCGAGACAACATTTT
CTTCAAAGCCCTATTGCAGCTAAATTTAAAGACATCAGATTTCATCCGAT
TCCTTACCGCACTTGTGATGCAGTTTCTACAAGTTATTTGGATAATAACC
GCACAATATGGTGGCTGTGCTGAACCTATAATATCTGATAGAAAATACTT
CATAGTAACCAGGATAGATTTTCTTAAGCTTTGGTACACTGATGGAGTCA
TTTTCTAAAAGACTCGTTTCTCTTACTGGTTTCAGTGGTTTGAAGAGCTT
ATTTGAGCTTACCTTTTAACACAAGTGTTTGGACTTATTAAAATAGTTTA
TGCTAAACCTATAAGCATTTGATTATCAGCTGTTTTCGAGTGTTATTACA
TTTGATGCATATATTGGAGCATCAGAAACATCACTGTTAGTTTCGAATCA
AAATCCAATGAGGTTCTGTTAAATTGTTATATCCTAAATTCTGACTTGGT
TTGCTCTTTTACCACCAAGAGTTATCCTACTATGTTGAGCCGGCTACATG
GATCGAATATCAATCAATGCCTTCGGGATTTATCAAAAACCAAAATTTAA
TTAAAATTATTTAGTGCAAAGTCATTATAATGGTTCACCTTTTTTCTTAG
GTCTTCCTTTGTCTAGTTTTCATAATAGCTCGGTTTGAATATTAAATCAC
GAGCAAGGTATGATATTCTTGGAATGGAAGTTTTCAAGAGCACATAGTTT
GGCTTGGCCTTGAAATATTCACAAGTCATAACATAAGGTCTTTTATCTGC
TTATCTGAAATTTAATGCTTGCCCAAATAGGCAGTAGGGTTTCATGTTTT
ATCATGACTTCTGCATGCTCTTTGGTGTATGCAGGCAGATGTTATAATGG
CTCTGGCTGGTTCAAATGGTGGATCTTGGTCCACGGCATTCTCGCCGAAA
ACTACTGCAAAACTAACTAATGAAAGTAACTTGCATAGTGGAGAAAATGA
AACAGGATTAGTGAGTAATGTGGCATTCACACAAGAGCATCATGGGAAGT
TGTCTGTTACCGGCAGTTCTAGTCGTGCTGTTGGGGGGCTTGGTGATCGG
GTATCTACTCCAGCTGGTAATACTCAGACATACTACATAGTTTGATTTCG
CTACTTTATAGTTTATACTGTCATAACATGCCTCCGTATGGTAGAGTTCA
TAAAAATACAAAATCTTTTATACCTGAAAACAATAACAGTACTGATCCTT
TTTGTGCCATCCTTTATTTCCTTTTGTTTACCTTACAAACCTTTCATTAT
AAATTCATTAGAATATTGGTCACATCGTTTCCTATAGTTATACCTTGCTT
AAATTAAACTAACTCCCAATCTTTTCATGATTTTGGTTGTGACATAATCC
TTAGGAAAATTCTTCTATTCTTGAAGTCAAAGTTTCATTTCTTTTGAACT
GTTTAATTTGTTGTTGATTGATTGGTAAATATCTGTTTGTAGGGGTACAC
CAAGGAAGCATTTTTGCTAAAGATACAAGAAATCCGGTTCAAGCAGCTGA
TCCCAGTTCCGAAGACAAAAGAGCATTGTGAATAGAGTTTGAGGCTGAAA
TGCTTATGTCAAATTTTCTCATGATCTTTCAAGTAC

protein sequence of Ca_15021.1_ICC4958_v2

>Ca_15021.1_ICC4958_v2 ID=Ca_15021.1_ICC4958_v2; Name=Ca_15021.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=421bp
MALLRMVQSHSHSQXXXXXXXXGGTHHLLNPVLHDFLGMKPSDTSADVRL
PETSVSASSAGARGPFSTTSETVSEKQVGNHLEGVPFYGPRSDFTGTEIS
NRLVGNKRSNSDSSFMGSSRDAFQMVPDSFQNSHLMKVLRNAFGGERSRR
PNDDEVLHAMQSMKPSSSSQIFHPPSTTKLDANKWERSILTNIGPSMQHP
PRGGQLMTPLAHQLASNKIRDTNAGPSFISQSAADEGSRTGIKGPGVLSS
INTSATATDKISSAVLLGGSRPKPLTNIVESFTPPSQHGLTSASRQMTIF
YGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKTTAKLTNESNLHS
GENETGLVSNVAFTQEHHGKLSVTGSSSRAVGGLGDRVSTPAGVHQGSIF
AKDTRNPVQAADPSSEDKRAL

mRNA from alignment at Ca_LG_5:43991462..43995697+

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ca_15021.1_ICC4958_v2 ID=Ca_15021.1_ICC4958_v2; Name=Ca_15021.1; organism=Cicer arietinum; type=mRNA; length=4236bp; location=Sequence derived from: Ca_LG_5:43991462..43995697+ (Cicer arietinum
ACAGAGTCTCTAAGATTATTAAACAACAGAGACATACATACGCCCATTAA
TATCAACACAAAACACAACAACAACATTTTCTGTAACAAATTAGAAAGAA
AAAAAATAACCTTTTTCTTTTTCTCTCTCTTCATCCCAGCTATGCAGCAG
AGTGAAATGGGTTTACCATGGCGTTACTAAGAATGGTTCAATCTCACTCT
CACTCTCAGCACAACAACAACAACAACGACAACGGTGGGACCCACCACTT
GCTCAATCCAGTACTCCATGATTTTCTCGGCATGAAACCATCTGATACTT
CCGCCGATGTTAGGTTACCGGAGACATCAGTCTCAGCTTCCTCCGCCGGT
GCACGTGGCCCTTTTTCCACCACCTCTGAAACTGTTTCTGGTAAGTCTTC
AAAATATAAAAGCTTTCATTTTTAGGTACATTACCCTTTGCCCATTAACC
CCTTTTTGGTTACTTGCTCTTTTTTTTTTTTTTAGTTAATTGATTCTTAT
TCACTAATGTTCTCTACTTTCCATTTTTATCTCTAAATGGGGTATCAGCA
ATATCATCACTTTTATTTGGTTGTGTTCTGTTGGTCTTTTATTTTTTCAA
CATTTTTTTGGATTTGGTTTGTTTTTGTTTCCTTAATTATCTAATGATTA
GGCTTTCATGTGATGTTGTTTTAAGTTAATTGAAGCTCTTTTTTTTTTTC
CTTTCTTTTTCTGTATGGTGTATGATTTAATTATCTGTTTCCATGAAATA
ATTGAGAGTGGAGAATCGAATTTAATCATTTTGTGCTGAAAGGGAAAATT
GTTAAATTACCATTGTTTTGAGAAGAAAACCTTTTTATGTCCTGTCAATG
TTTGGGCATTTGGTACTATAATGATATGAATTTTTAGGTATTTTTCATAA
TTTTTTTTTTGTGAAACTGTGTTGGTCTTTTTTCCTTTTTTGGTTTCTTA
GTGTGTGTTTGATCTGCAGTGACAAAAATTGATTTCGAATGAATTGCTTC
TGTAAAGTTAATTATGACTAAATGCTTGCGTAAATTCATGTAAAAGTGAG
TTGAATTATAAATTCCAGACTAAAAATCAATTCTTGAAGCAAAAACTACA
AATTGTAGCTTCAAGTTAGAATCAATATTAGAAGATAACTAAATATGTCA
AAATCAATTTTACACCTCTAAAATCAATTTTGACACATTCAAAAGTAGAG
CCAAACTTATTCCATAAATGTGCTTTCTTAATTATTCCATAAAAAGTTGT
AATTGAAAACACATTATTTATGGGAAGTTTCTATATATTCTTTAAAGGGA
ATGTAATGTTTTTCCCCTCATCAATTTGGTAGAAAAGCAGGTAGGGAATC
ATCTTGAGGGAGTTCCATTCTATGGCCCAAGAAGTGATTTTACTGGCACT
GAGATAAGTAACAGACTAGTGGGGAACAAGAGAAGTAATTCTGATTCTTC
TTTTATGGGTTCCTCCAGAGATGCCTTCCAAATGGTCCCTGACTCCTTTC
AAAACTCACATTTGATGAAGGTTACTTTCAACTATCATTTAATTCTACTC
CAATATATTCAATAGTTTAATTTTTTACACTAGTCAGTGTAAAAACTTTT
ACATTGTCAACAAATCATAACCAAACATACGTGTGATTTTAGAAGTAGTT
ATGATTAATGTCAAATGTTTTTAATAATTTGACAATTATGATTAATTGAC
AGTGTAAAAATTCTTTACACAGATCGTGTATATGAAATAAATCATATTCA
ATAACCAAAAAAGAAACATACTTTTTGCTTTTGTATTCTTTTCTTTGATG
TCTTAAGTCCTGTTTTTGTGCAGGTCCTCCGAAATGCGTTTGGCGGAGAG
AGGTCTAGAAGGCCTAATGACGATGAAGTGTTACATGCTATGCAGTCAAT
GAAGCCATCTTCTAGTTCTCAGATATTTCATCCTCCATCCACCACTAAGC
TTGATGCAAACAAATGGGAACGGTCTATTCTCACGAACATTGGCCCTTCT
ATGCAGCATCCTCCGCGTGGAGGGCAGTTGATGACTCCTCTTGCACACCA
ATTAGCTTCAAATAAGATTAGGGATACCAATGCCGGTCCTTCATTTATCT
CTCAGTCTGCTGCTGATGAAGGATCAAGAACCGGAATCAAAGGCCCCGGA
GTTTTAAGTTCCATAAACACATCTGCTACTGCTACTGATAAAATTTCATC
TGCAGTGCTACTCGGCGGAAGCAGGCCAAAACCTCTAACGAATATAGTAG
AATCATTCACACCCCCAAGGTGAATCTTTTTCATAAATACAGTTGTTCAA
CTCCCTTTGTTTATTTTTATTTTCACTCCCTTTAATTTGGGCAAAAAGTA
GTAGACTGACTTTATGCATTTTGGTATTGATGGCAGTCAACACGGGCTAA
CATCTGCCAGCCGCCAGATGACTATTTTTTACGGAGGTCAAGCGCATGTT
TTTGATGATGTCCACCCACATAAGGTCTGACCTCCTATTCTTAACACGTC
ATATTTGCTTACTGCATTTAGTGAGATAAGGTCTGAAATTAGTTTGGATC
TGTGAACCATCACGAAAAACAGTTTGTGCCTTAAAATTTTTGTCTGTGGT
TGATTTAATAATTATTCAATCTATTACTCAAACTGTCGAGACAACATTTT
CTTCAAAGCCCTATTGCAGCTAAATTTAAAGACATCAGATTTCATCCGAT
TCCTTACCGCACTTGTGATGCAGTTTCTACAAGTTATTTGGATAATAACC
GCACAATATGGTGGCTGTGCTGAACCTATAATATCTGATAGAAAATACTT
CATAGTAACCAGGATAGATTTTCTTAAGCTTTGGTACACTGATGGAGTCA
TTTTCTAAAAGACTCGTTTCTCTTACTGGTTTCAGTGGTTTGAAGAGCTT
ATTTGAGCTTACCTTTTAACACAAGTGTTTGGACTTATTAAAATAGTTTA
TGCTAAACCTATAAGCATTTGATTATCAGCTGTTTTCGAGTGTTATTACA
TTTGATGCATATATTGGAGCATCAGAAACATCACTGTTAGTTTCGAATCA
AAATCCAATGAGGTTCTGTTAAATTGTTATATCCTAAATTCTGACTTGGT
TTGCTCTTTTACCACCAAGAGTTATCCTACTATGTTGAGCCGGCTACATG
GATCGAATATCAATCAATGCCTTCGGGATTTATCAAAAACCAAAATTTAA
TTAAAATTATTTAGTGCAAAGTCATTATAATGGTTCACCTTTTTTCTTAG
GTCTTCCTTTGTCTAGTTTTCATAATAGCTCGGTTTGAATATTAAATCAC
GAGCAAGGTATGATATTCTTGGAATGGAAGTTTTCAAGAGCACATAGTTT
GGCTTGGCCTTGAAATATTCACAAGTCATAACATAAGGTCTTTTATCTGC
TTATCTGAAATTTAATGCTTGCCCAAATAGGCAGTAGGGTTTCATGTTTT
ATCATGACTTCTGCATGCTCTTTGGTGTATGCAGGCAGATGTTATAATGG
CTCTGGCTGGTTCAAATGGTGGATCTTGGTCCACGGCATTCTCGCCGAAA
ACTACTGCAAAACTAACTAATGAAAGTAACTTGCATAGTGGAGAAAATGA
AACAGGATTAGTGAGTAATGTGGCATTCACACAAGAGCATCATGGGAAGT
TGTCTGTTACCGGCAGTTCTAGTCGTGCTGTTGGGGGGCTTGGTGATCGG
GTATCTACTCCAGCTGGTAATACTCAGACATACTACATAGTTTGATTTCG
CTACTTTATAGTTTATACTGTCATAACATGCCTCCGTATGGTAGAGTTCA
TAAAAATACAAAATCTTTTATACCTGAAAACAATAACAGTACTGATCCTT
TTTGTGCCATCCTTTATTTCCTTTTGTTTACCTTACAAACCTTTCATTAT
AAATTCATTAGAATATTGGTCACATCGTTTCCTATAGTTATACCTTGCTT
AAATTAAACTAACTCCCAATCTTTTCATGATTTTGGTTGTGACATAATCC
TTAGGAAAATTCTTCTATTCTTGAAGTCAAAGTTTCATTTCTTTTGAACT
GTTTAATTTGTTGTTGATTGATTGGTAAATATCTGTTTGTAGGGGTACAC
CAAGGAAGCATTTTTGCTAAAGATACAAGAAATCCGGTTCAAGCAGCTGA
TCCCAGTTCCGAAGACAAAAGAGCATTGTGAATAGAGTTTGAGGCTGAAA
TGCTTATGTCAAATTTTCTCATGATCTTTCAAGTAC

Coding sequence (CDS) from alignment at Ca_LG_5:43991462..43995697+

>Ca_15021.1_ICC4958_v2 ID=Ca_15021.1_ICC4958_v2; Name=Ca_15021.1; organism=Cicer arietinum; type=CDS; length=1266bp; location=Sequence derived from: Ca_LG_5:43991462..43995697+ (Cicer arietinum
ATGGCGTTACTAAGAATGGTTCAATCTCACTCTCACTCTCAGCACAACAA
CAACAACAACGACAACGGTGGGACCCACCACTTGCTCAATCCAGTACTCC
ATGATTTTCTCGGCATGAAACCATCTGATACTTCCGCCGATGTTAGGTTA
CCGGAGACATCAGTCTCAGCTTCCTCCGCCGGTGCACGTGGCCCTTTTTC
CACCACCTCTGAAACTGTTTCTGAAAAGCAGGTAGGGAATCATCTTGAGG
GAGTTCCATTCTATGGCCCAAGAAGTGATTTTACTGGCACTGAGATAAGT
AACAGACTAGTGGGGAACAAGAGAAGTAATTCTGATTCTTCTTTTATGGG
TTCCTCCAGAGATGCCTTCCAAATGGTCCCTGACTCCTTTCAAAACTCAC
ATTTGATGAAGGTCCTCCGAAATGCGTTTGGCGGAGAGAGGTCTAGAAGG
CCTAATGACGATGAAGTGTTACATGCTATGCAGTCAATGAAGCCATCTTC
TAGTTCTCAGATATTTCATCCTCCATCCACCACTAAGCTTGATGCAAACA
AATGGGAACGGTCTATTCTCACGAACATTGGCCCTTCTATGCAGCATCCT
CCGCGTGGAGGGCAGTTGATGACTCCTCTTGCACACCAATTAGCTTCAAA
TAAGATTAGGGATACCAATGCCGGTCCTTCATTTATCTCTCAGTCTGCTG
CTGATGAAGGATCAAGAACCGGAATCAAAGGCCCCGGAGTTTTAAGTTCC
ATAAACACATCTGCTACTGCTACTGATAAAATTTCATCTGCAGTGCTACT
CGGCGGAAGCAGGCCAAAACCTCTAACGAATATAGTAGAATCATTCACAC
CCCCAAGTCAACACGGGCTAACATCTGCCAGCCGCCAGATGACTATTTTT
TACGGAGGTCAAGCGCATGTTTTTGATGATGTCCACCCACATAAGGCAGA
TGTTATAATGGCTCTGGCTGGTTCAAATGGTGGATCTTGGTCCACGGCAT
TCTCGCCGAAAACTACTGCAAAACTAACTAATGAAAGTAACTTGCATAGT
GGAGAAAATGAAACAGGATTAGTGAGTAATGTGGCATTCACACAAGAGCA
TCATGGGAAGTTGTCTGTTACCGGCAGTTCTAGTCGTGCTGTTGGGGGGC
TTGGTGATCGGGTATCTACTCCAGCTGGGGTACACCAAGGAAGCATTTTT
GCTAAAGATACAAGAAATCCGGTTCAAGCAGCTGATCCCAGTTCCGAAGA
CAAAAGAGCATTGTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010399	Tify_dom
IPR040390	TIFY/JAZ

Search form

Ca_15021.1, Ca_15021.1_ICC4958_v2 (mRNA) Cicer arietinum