Ca_15030.1, Ca_15030.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_15030.1
Unique NameCa_15030.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length1161
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_5supercontigCa_LG_5:44065583..44066743 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR473Pisum sativum Cameor genome v1aPisum sativum
caipsR488Pisum sativum Cameor genome v1aPisum sativum
caipsR508Pisum sativum Cameor genome v1aPisum sativum
caipsR545Pisum sativum Cameor genome v1aPisum sativum
caipvR0543Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caipvR0660Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0599Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivuR0614Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0531Cajanus cajan Asha genome v1.0Cajanus cajan
caiccR0615Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0373Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0440Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0894Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL655Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caizwsR510Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caizwsR609Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caitifR553Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR554Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifR597Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR595Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivrvR500Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivrvR546Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR0629Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0690Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR548Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR609Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0521Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
caicanR0563Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Psat5g028640.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.2g186720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_009385Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.2g150640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat5g027280.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_014643842.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun09g206400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_042306Cajanus cajan Asha genome v1.0Cajanus cajan
jg55448.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan04g215200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr09.1642Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat05G0098800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.009G096000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_15030Ca_15030_ICC4958_v2Cicer arietinumgene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_15030.1.utr3p1Ca_15030.1.utr3p1_ICC4958_v2Cicer arietinumthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_15030.1.cds3Ca_15030.1.cds3_ICC4958_v2Cicer arietinumCDS
Ca_15030.1.cds2Ca_15030.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_15030.1.cds1Ca_15030.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_15030.1.exon3Ca_15030.1.exon3_ICC4958_v2Cicer arietinumexon
Ca_15030.1.exon2Ca_15030.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_15030.1.exon1Ca_15030.1.exon1_ICC4958_v2Cicer arietinumexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_15030.1.utr5p1Ca_15030.1.utr5p1_ICC4958_v2Cicer arietinumfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_15030.1_ICC4958_v2Ca_15030.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_15030.1 vs. DB:Swiss
Match: EGC2_ARATH (EG45-like domain containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EGC2 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 1.502e-8
Identity = 37/115 (32.17%), Postives = 54/115 (46.96%), Query Frame = 1 
Query:   91 GTASHYDRPFLPTACFGEDASEFPSSNMFGSAGEGIWDNGAACGRLYEVRCISAAV--PRTCIPAQTIQIKIVDRAQXXXXXXXXXXXXXXXXXXAFQIIANLSASLINIEFQQV 429
            G A +YD P+  +AC+G          +       +W NG ACGR Y VRCI A     R C   +T+ +K+VD  +         +  L LS  AF++IAN  A  I + +  +
Sbjct:   28 GKAVYYDPPYTRSACYGTQ-----RETLVVGVKNNLWQNGRACGRRYRVRCIGATYNFDRAC-TGRTVDVKVVDFCR------EPCNGDLNLSRDAFRVIANTDAGNIRVVYTPI 130
[Close]
BLAST of Ca_15030.1 vs. DB:Swiss
Match: EGC_CITJA (EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.032e-8
Identity = 40/117 (34.19%), Postives = 56/117 (47.86%), Query Frame = 1 
Query:   82 ADLGTASHYDRPFLPTACFGEDASEFPSSNMFGSAGEGIWDNGAACGRLYEVRCISAAVPRTCIPAQ--TIQIKIVDRAQXXXXXXXXXXXXXXXXXXAFQIIANLSASLINIEFQQ 426
            A  GTA+ Y  P++P+AC G          M  +A   IW+NGA C + + V+C  A    T  P +  ++ +KIVD         +    ++ LS  AF  IAN  A  I IEF Q
Sbjct:   24 ASEGTATFYTPPYVPSACNGYKNDGV----MIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCP------AGCQATIDLSQEAFSQIANPDAGKIKIEFNQ 130
The following BLAST results are available for this feature:
BLAST of Ca_15030.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
EGC2_ARATH1.502e-832.17EG45-like domain containing protein 2 OS=Arabidops... [more]
EGC_CITJA2.032e-834.19EG45-like domain containing protein OS=Citrus jamb... [more]
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 66..139
e-value: 4.7E-9
score: 36.4
IPR036908RlpA-like domain superfamilyGENE3D2.40.40.10coord: 25..143
e-value: 6.3E-19
score: 70.3
IPR036908RlpA-like domain superfamilySUPERFAMILY50685Barwin-like endoglucanasescoord: 16..143
NoneNo IPR availablePANTHERPTHR47480FAMILY NOT NAMEDcoord: 9..143
NoneNo IPR availablePANTHERPTHR47480:SF1coord: 9..143
IPR007112Expansin/pollen allergen, DPBB domainPROSITEPS50842EXPANSIN_EG45coord: 42..143
score: 11.815

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1; organism=Cicer arietinum; type=mRNA; length=1161bp
AACGAATAACACTATGGTAATAAATAAACTAATTTATTCAATTCGTTAAT
TTGAACAATTTTTGCAGCAATGTCCTCCAATTCTCAATATCTTTCCTTCC
AACAAAGCCTAATCATCATCATCATCCTCTTCCTCATCCACTACTCTCAA
GCTGACCTTGGCACTGCTTCCCATTATGATCGTCCCTTTTTACGTAAGTC
GATCCCAAATACAATTGATTATAAAATTAGATGGATCTATTTATTTATTT
ATTTATTTAAATTGAATAGTATTTATAGTTGTTAATGAATGAATGGTAAG
TGAGAAAGTGAAATGAAATGTGATAAAACAGCAACAGCATGTTTTGGGGA
AGATGCATCAGAATTTCCATCAAGCAACATGTTTGGTTCAGCAGGAGAAG
GAATATGGGACAATGGGGCAGCATGTGGAAGATTATATGAAGTTAGGTGT
ATAAGTGCAGCTGTTCCTAGAACATGTATTCCTGCTCAAACCATTCAGAT
TAAGATTGTTGATAGAGCACAATCCTCTGTTTCTAGGCCTTCTTCAACTG
ATACTTCTCTTGTCCTCTCTACCACTGCTTTTCAGATCATTGCAAATCTT
TCTGCATCATTGATTAACATTGAATTCCAACAGTAAGTTATCTTTTATTG
CTTTTCTTTTGGTCACCTATTAATATATCAAGGTGGTTAGTTAGTTGTTG
AAAAATCAAATGTTGAATTAAAGAACTTTCTCAACTACTTTTATACTTTC
TTTAAAATACTACTCATAATTTTTTATATTTTTAATGAACTAATTTAGTA
TTCACTGAATAATTTAAATTAATAAGTTTTTTTTATTTATTTATTGAGAT
TACACAAATCAAATGTGTTCAACTATGTTTATAATAAGTAATATACTTTT
TAAGATAAAATTGATCTATTTTCATGCCTATACATAATTAAATCAATCTA
TTTTCATGTTCAGGGTTTGAAAATTGGAAATGGGCTTAGATATGGCACTA
TATAAAGGGAGGATAGGAAATGCCCGGAAATTTTGTTGCTGTGAAGATTG
CTGCAGAAGAATTTGCATGAGTATTTTAATTTCTAATTGTCAATATAGAT
TAATATTTGTATACATTTTGTTCCTAAGAGGATATCTTCTCTTCTGCCGA
TTAGCTATTAT
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protein sequence of Ca_15030.1_ICC4958_v2

>Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=143bp
MSSNSQYLSFQQSLIIIIILFLIHYSQADLGTASHYDRPFLPTACFGEDA
SEFPSSNMFGSAGEGIWDNGAACGRLYEVRCISAAVPRTCIPAQTIQIKI
VDRAQSSVSRPSSTDTSLVLSTTAFQIIANLSASLINIEFQQV
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mRNA from alignment at Ca_LG_5:44065583..44066743-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1; organism=Cicer arietinum; type=mRNA; length=1161bp; location=Sequence derived from: Ca_LG_5:44065583..44066743- (Cicer arietinum
AACGAATAACACTATGGTAATAAATAAACTAATTTATTCAATTCGTTAAT
TTGAACAATTTTTGCAGCAATGTCCTCCAATTCTCAATATCTTTCCTTCC
AACAAAGCCTAATCATCATCATCATCCTCTTCCTCATCCACTACTCTCAA
GCTGACCTTGGCACTGCTTCCCATTATGATCGTCCCTTTTTACGTAAGTC
GATCCCAAATACAATTGATTATAAAATTAGATGGATCTATTTATTTATTT
ATTTATTTAAATTGAATAGTATTTATAGTTGTTAATGAATGAATGGTAAG
TGAGAAAGTGAAATGAAATGTGATAAAACAGCAACAGCATGTTTTGGGGA
AGATGCATCAGAATTTCCATCAAGCAACATGTTTGGTTCAGCAGGAGAAG
GAATATGGGACAATGGGGCAGCATGTGGAAGATTATATGAAGTTAGGTGT
ATAAGTGCAGCTGTTCCTAGAACATGTATTCCTGCTCAAACCATTCAGAT
TAAGATTGTTGATAGAGCACAATCCTCTGTTTCTAGGCCTTCTTCAACTG
ATACTTCTCTTGTCCTCTCTACCACTGCTTTTCAGATCATTGCAAATCTT
TCTGCATCATTGATTAACATTGAATTCCAACAGTAAGTTATCTTTTATTG
CTTTTCTTTTGGTCACCTATTAATATATCAAGGTGGTTAGTTAGTTGTTG
AAAAATCAAATGTTGAATTAAAGAACTTTCTCAACTACTTTTATACTTTC
TTTAAAATACTACTCATAATTTTTTATATTTTTAATGAACTAATTTAGTA
TTCACTGAATAATTTAAATTAATAAGTTTTTTTTATTTATTTATTGAGAT
TACACAAATCAAATGTGTTCAACTATGTTTATAATAAGTAATATACTTTT
TAAGATAAAATTGATCTATTTTCATGCCTATACATAATTAAATCAATCTA
TTTTCATGTTCAGGGTTTGAAAATTGGAAATGGGCTTAGATATGGCACTA
TATAAAGGGAGGATAGGAAATGCCCGGAAATTTTGTTGCTGTGAAGATTG
CTGCAGAAGAATTTGCATGAGTATTTTAATTTCTAATTGTCAATATAGAT
TAATATTTGTATACATTTTGTTCCTAAGAGGATATCTTCTCTTCTGCCGA
TTAGCTATTAT
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Coding sequence (CDS) from alignment at Ca_LG_5:44065583..44066743-

>Ca_15030.1_ICC4958_v2 ID=Ca_15030.1_ICC4958_v2; Name=Ca_15030.1; organism=Cicer arietinum; type=CDS; length=432bp; location=Sequence derived from: Ca_LG_5:44065583..44066743- (Cicer arietinum
ATGTCCTCCAATTCTCAATATCTTTCCTTCCAACAAAGCCTAATCATCAT
CATCATCCTCTTCCTCATCCACTACTCTCAAGCTGACCTTGGCACTGCTT
CCCATTATGATCGTCCCTTTTTACCAACAGCATGTTTTGGGGAAGATGCA
TCAGAATTTCCATCAAGCAACATGTTTGGTTCAGCAGGAGAAGGAATATG
GGACAATGGGGCAGCATGTGGAAGATTATATGAAGTTAGGTGTATAAGTG
CAGCTGTTCCTAGAACATGTATTCCTGCTCAAACCATTCAGATTAAGATT
GTTGATAGAGCACAATCCTCTGTTTCTAGGCCTTCTTCAACTGATACTTC
TCTTGTCCTCTCTACCACTGCTTTTCAGATCATTGCAAATCTTTCTGCAT
CATTGATTAACATTGAATTCCAACAGGTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009009RlpA-like_DPBB
IPR036908RlpA-like_sf
IPR007112Expansin/allergen_DPBB_dom