Cr_07206.1, Cr_07206.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview
NameCr_07206.1
Unique NameCr_07206.1_PI489777_v1
TypemRNA
OrganismCicer reticulatum (wild chickpea)
Sequence length557
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Cr_LG_3supercontigCr_LG_3:33782219..33782775 +Cicer reticulatum L. PI489777 genome v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer reticulatum L. PI489777 genome v12016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot2019-05-21
InterProScan: C. reticulatum PI489777 genome v12019-05-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cr_07206Cr_07206_PI489777_v1Cicer reticulatumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_07206.1:exon1Cr_07206.1:exon1_PI489777_v1Cicer reticulatumexon
Cr_07206.1:exon2Cr_07206.1:exon2_PI489777_v1Cicer reticulatumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_07206.1:cds1Cr_07206.1:cds1_PI489777_v1Cicer reticulatumCDS
Cr_07206.1:cds2Cr_07206.1:cds2_PI489777_v1Cicer reticulatumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cr_07206.1_PI489777_v1Cr_07206.1_PI489777_v1Cicer reticulatumpolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Cr_07206.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12701:SF13B-CELL RECEPTOR-ASSOCIATED PROTEIN 31-LIKE PROTEINcoord: 1..96
IPR008417B-cell receptor-associated protein 29/31PANTHERPTHR12701BCR-ASSOCIATED PROTEIN, BAPcoord: 1..96

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1; organism=Cicer reticulatum; type=mRNA; length=557bp
ATGATTCAGTTGTTGTTCTTGGTGCTTTTTGCTGAGGGTGCTATGGCTTT
TCTTTTGTTGGTGAAGATAGGGCCATTAAGGGATCTTGTGATGAAAAGCT
TGGATCAACTCAAGATGGGAAAAGGTCCAGCTACAGTTAAAACTATTGCT
GGAACAATGTCTGTGATTCTCCTTTCAAGTTTTATGAGTATTGTTAAGAT
CCAGAACAAAGGTGCTAAGCTTGGTACCATGTCACCTATGGATCAAGTTC
TTTGGAGAACTCACTTGCTTGAGGCTTCACTCATTGGTGCGTTGACACTC
CTTTTGTCTTTGTCATTTGCATTTTTTTAGTTGTTTTGATGCTTAAACAC
TTTTTGGTTTTTATTAGTTTTATGGCTCTTATGTTTTTTTTTGTTGTTGA
TAATTGAATGTTAGTAGTTAGTATATATGTTAGGGGGAGGGGAAATGTTA
GGTGCCACATATTGAATCCTGGACCTCCTGCATACAACTCCATTGATGTT
CCTAGCCATATCACCGGGCTACTCCTTCGGGGACTGGCTCTTGTGTTGCT
AAGTTAA
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protein sequence of Cr_07206.1_PI489777_v1

>Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=141bp
MIQLLFLVLFAEGAMAFLLLVKIGPLRDLVMKSLDQLKMGKGPATVKTIA
GTMSVILLSSFMSIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLIVSIYV
RGRGNVRCHILNPGPPAYNSIDVPSHITGLLLRGLALVLLS
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mRNA from alignment at Cr_LG_3:33782219..33782775+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1; organism=Cicer reticulatum; type=mRNA; length=557bp; location=Sequence derived from: Cr_LG_3:33782219..33782775+ (Cicer reticulatum
ATGATTCAGTTGTTGTTCTTGGTGCTTTTTGCTGAGGGTGCTATGGCTTT
TCTTTTGTTGGTGAAGATAGGGCCATTAAGGGATCTTGTGATGAAAAGCT
TGGATCAACTCAAGATGGGAAAAGGTCCAGCTACAGTTAAAACTATTGCT
GGAACAATGTCTGTGATTCTCCTTTCAAGTTTTATGAGTATTGTTAAGAT
CCAGAACAAAGGTGCTAAGCTTGGTACCATGTCACCTATGGATCAAGTTC
TTTGGAGAACTCACTTGCTTGAGGCTTCACTCATTGGTGCGTTGACACTC
CTTTTGTCTTTGTCATTTGCATTTTTTTAGTTGTTTTGATGCTTAAACAC
TTTTTGGTTTTTATTAGTTTTATGGCTCTTATGTTTTTTTTTGTTGTTGA
TAATTGAATGTTAGTAGTTAGTATATATGTTAGGGGGAGGGGAAATGTTA
GGTGCCACATATTGAATCCTGGACCTCCTGCATACAACTCCATTGATGTT
CCTAGCCATATCACCGGGCTACTCCTTCGGGGACTGGCTCTTGTGTTGCT
AAGTTAA
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Coding sequence (CDS) from alignment at Cr_LG_3:33782219..33782775+

>Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1; organism=Cicer reticulatum; type=CDS; length=426bp; location=Sequence derived from: Cr_LG_3:33782219..33782775+ (Cicer reticulatum
ATGATTCAGTTGTTGTTCTTGGTGCTTTTTGCTGAGGGTGCTATGGCTTT
TCTTTTGTTGGTGAAGATAGGGCCATTAAGGGATCTTGTGATGAAAAGCT
TGGATCAACTCAAGATGGGAAAAGGTCCAGCTACAGTTAAAACTATTGCT
GGAACAATGTCTGTGATTCTCCTTTCAAGTTTTATGAGTATTGTTAAGAT
CCAGAACAAAGGTGCTAAGCTTGGTACCATGTCACCTATGGATCAAGTTC
TTTGGAGAACTCACTTGCTTGAGGCTTCACTCATTGTTAGTATATATGTT
AGGGGGAGGGGAAATGTTAGGTGCCACATATTGAATCCTGGACCTCCTGC
ATACAACTCCATTGATGTTCCTAGCCATATCACCGGGCTACTCCTTCGGG
GACTGGCTCTTGTGTTGCTAAGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008417BAP29/BAP31
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport