Cr_07206.1, Cr_07206.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview


Name	Cr_07206.1
Unique Name	Cr_07206.1_PI489777_v1
Type	mRNA
Organism	Cicer reticulatum (wild chickpea)
Sequence length	557

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Cr_LG_3	supercontig	Cr_LG_3:33782219..33782775 +	Cicer reticulatum L. PI489777 genome v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer reticulatum L. PI489777 genome v1	2016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot	2019-05-21
InterProScan: C. reticulatum PI489777 genome v1	2019-05-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
crpsR248	Pisum sativum Cameor genome v1a	Pisum sativum
crvuR287	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crzwsR248	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crtifR286	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crvfhR290	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvrvR252	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvssR265	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvuaR280	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
cancrL240	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
evm.model.Chr05.1186	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-XM_014641825.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
jg6833.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigun05g133900.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_004491653.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Psat03G0464600-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cr_07206	Cr_07206_PI489777_v1	Cicer reticulatum	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_07206.1:exon1	Cr_07206.1:exon1_PI489777_v1	Cicer reticulatum	exon
Cr_07206.1:exon2	Cr_07206.1:exon2_PI489777_v1	Cicer reticulatum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_07206.1:cds1	Cr_07206.1:cds1_PI489777_v1	Cicer reticulatum	CDS
Cr_07206.1:cds2	Cr_07206.1:cds2_PI489777_v1	Cicer reticulatum	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cr_07206.1_PI489777_v1	Cr_07206.1_PI489777_v1	Cicer reticulatum	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of Cr_07206.1 vs. DB:Swiss

BLAST of Cr_07206.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12701:SF13	B-CELL RECEPTOR-ASSOCIATED PROTEIN 31-LIKE PROTEIN	coord: 1..96
IPR008417	B-cell receptor-associated protein 29/31	PANTHER	PTHR12701	BCR-ASSOCIATED PROTEIN, BAP	coord: 1..96

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Cr_LG_3:33782219..33782775+
coding sequence from alignment at Cr_LG_3:33782219..33782775+

mRNA sequence

>Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1; organism=Cicer reticulatum; type=mRNA; length=557bp
ATGATTCAGTTGTTGTTCTTGGTGCTTTTTGCTGAGGGTGCTATGGCTTT
TCTTTTGTTGGTGAAGATAGGGCCATTAAGGGATCTTGTGATGAAAAGCT
TGGATCAACTCAAGATGGGAAAAGGTCCAGCTACAGTTAAAACTATTGCT
GGAACAATGTCTGTGATTCTCCTTTCAAGTTTTATGAGTATTGTTAAGAT
CCAGAACAAAGGTGCTAAGCTTGGTACCATGTCACCTATGGATCAAGTTC
TTTGGAGAACTCACTTGCTTGAGGCTTCACTCATTGGTGCGTTGACACTC
CTTTTGTCTTTGTCATTTGCATTTTTTTAGTTGTTTTGATGCTTAAACAC
TTTTTGGTTTTTATTAGTTTTATGGCTCTTATGTTTTTTTTTGTTGTTGA
TAATTGAATGTTAGTAGTTAGTATATATGTTAGGGGGAGGGGAAATGTTA
GGTGCCACATATTGAATCCTGGACCTCCTGCATACAACTCCATTGATGTT
CCTAGCCATATCACCGGGCTACTCCTTCGGGGACTGGCTCTTGTGTTGCT
AAGTTAA

protein sequence of Cr_07206.1_PI489777_v1

>Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=141bp
MIQLLFLVLFAEGAMAFLLLVKIGPLRDLVMKSLDQLKMGKGPATVKTIA
GTMSVILLSSFMSIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLIVSIYV
RGRGNVRCHILNPGPPAYNSIDVPSHITGLLLRGLALVLLS

mRNA from alignment at Cr_LG_3:33782219..33782775+

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1; organism=Cicer reticulatum; type=mRNA; length=557bp; location=Sequence derived from: Cr_LG_3:33782219..33782775+ (Cicer reticulatum
ATGATTCAGTTGTTGTTCTTGGTGCTTTTTGCTGAGGGTGCTATGGCTTT
TCTTTTGTTGGTGAAGATAGGGCCATTAAGGGATCTTGTGATGAAAAGCT
TGGATCAACTCAAGATGGGAAAAGGTCCAGCTACAGTTAAAACTATTGCT
GGAACAATGTCTGTGATTCTCCTTTCAAGTTTTATGAGTATTGTTAAGAT
CCAGAACAAAGGTGCTAAGCTTGGTACCATGTCACCTATGGATCAAGTTC
TTTGGAGAACTCACTTGCTTGAGGCTTCACTCATTGGTGCGTTGACACTC
CTTTTGTCTTTGTCATTTGCATTTTTTTAGTTGTTTTGATGCTTAAACAC
TTTTTGGTTTTTATTAGTTTTATGGCTCTTATGTTTTTTTTTGTTGTTGA
TAATTGAATGTTAGTAGTTAGTATATATGTTAGGGGGAGGGGAAATGTTA
GGTGCCACATATTGAATCCTGGACCTCCTGCATACAACTCCATTGATGTT
CCTAGCCATATCACCGGGCTACTCCTTCGGGGACTGGCTCTTGTGTTGCT
AAGTTAA

Coding sequence (CDS) from alignment at Cr_LG_3:33782219..33782775+

>Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1; organism=Cicer reticulatum; type=CDS; length=426bp; location=Sequence derived from: Cr_LG_3:33782219..33782775+ (Cicer reticulatum
ATGATTCAGTTGTTGTTCTTGGTGCTTTTTGCTGAGGGTGCTATGGCTTT
TCTTTTGTTGGTGAAGATAGGGCCATTAAGGGATCTTGTGATGAAAAGCT
TGGATCAACTCAAGATGGGAAAAGGTCCAGCTACAGTTAAAACTATTGCT
GGAACAATGTCTGTGATTCTCCTTTCAAGTTTTATGAGTATTGTTAAGAT
CCAGAACAAAGGTGCTAAGCTTGGTACCATGTCACCTATGGATCAAGTTC
TTTGGAGAACTCACTTGCTTGAGGCTTCACTCATTGTTAGTATATATGTT
AGGGGGAGGGGAAATGTTAGGTGCCACATATTGAATCCTGGACCTCCTGC
ATACAACTCCATTGATGTTCCTAGCCATATCACCGGGCTACTCCTTCGGG
GACTGGCTCTTGTGTTGCTAAGTTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008417	BAP29/BAP31

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005783	endoplasmic reticulum

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

Search form

Cr_07206.1, Cr_07206.1_PI489777_v1 (mRNA) Cicer reticulatum