Transcript Overview
| Name | Cr_07206.1 |
|---|
| Unique Name | Cr_07206.1_PI489777_v1 |
|---|
| Type | mRNA |
|---|
| Organism | Cicer reticulatum (wild chickpea) |
|---|
| Sequence length | 557 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Cr_07206.1_PI489777_v1 | Cr_07206.1_PI489777_v1 | Cicer reticulatum | polypeptide |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PANTHER | PTHR12701:SF13 | B-CELL RECEPTOR-ASSOCIATED PROTEIN 31-LIKE PROTEIN | coord: 1..96 |
| IPR008417 | B-cell receptor-associated protein 29/31 | PANTHER | PTHR12701 | BCR-ASSOCIATED PROTEIN, BAP | coord: 1..96 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1; organism=Cicer reticulatum; type=mRNA; length=557bp
ATGATTCAGTTGTTGTTCTTGGTGCTTTTTGCTGAGGGTGCTATGGCTTT
TCTTTTGTTGGTGAAGATAGGGCCATTAAGGGATCTTGTGATGAAAAGCT
TGGATCAACTCAAGATGGGAAAAGGTCCAGCTACAGTTAAAACTATTGCT
GGAACAATGTCTGTGATTCTCCTTTCAAGTTTTATGAGTATTGTTAAGAT
CCAGAACAAAGGTGCTAAGCTTGGTACCATGTCACCTATGGATCAAGTTC
TTTGGAGAACTCACTTGCTTGAGGCTTCACTCATTGGTGCGTTGACACTC
CTTTTGTCTTTGTCATTTGCATTTTTTTAGTTGTTTTGATGCTTAAACAC
TTTTTGGTTTTTATTAGTTTTATGGCTCTTATGTTTTTTTTTGTTGTTGA
TAATTGAATGTTAGTAGTTAGTATATATGTTAGGGGGAGGGGAAATGTTA
GGTGCCACATATTGAATCCTGGACCTCCTGCATACAACTCCATTGATGTT
CCTAGCCATATCACCGGGCTACTCCTTCGGGGACTGGCTCTTGTGTTGCT
AAGTTAA back to topprotein sequence of Cr_07206.1_PI489777_v1 >Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=141bp
MIQLLFLVLFAEGAMAFLLLVKIGPLRDLVMKSLDQLKMGKGPATVKTIA
GTMSVILLSSFMSIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLIVSIYV
RGRGNVRCHILNPGPPAYNSIDVPSHITGLLLRGLALVLLS back to topmRNA from alignment at Cr_LG_3:33782219..33782775+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1; organism=Cicer reticulatum; type=mRNA; length=557bp; location=Sequence derived from: Cr_LG_3:33782219..33782775+ (Cicer reticulatum
ATGATTCAGTTGTTGTTCTTGGTGCTTTTTGCTGAGGGTGCTATGGCTTT
TCTTTTGTTGGTGAAGATAGGGCCATTAAGGGATCTTGTGATGAAAAGCT
TGGATCAACTCAAGATGGGAAAAGGTCCAGCTACAGTTAAAACTATTGCT
GGAACAATGTCTGTGATTCTCCTTTCAAGTTTTATGAGTATTGTTAAGAT
CCAGAACAAAGGTGCTAAGCTTGGTACCATGTCACCTATGGATCAAGTTC
TTTGGAGAACTCACTTGCTTGAGGCTTCACTCATTGGTGCGTTGACACTC
CTTTTGTCTTTGTCATTTGCATTTTTTTAGTTGTTTTGATGCTTAAACAC
TTTTTGGTTTTTATTAGTTTTATGGCTCTTATGTTTTTTTTTGTTGTTGA
TAATTGAATGTTAGTAGTTAGTATATATGTTAGGGGGAGGGGAAATGTTA
GGTGCCACATATTGAATCCTGGACCTCCTGCATACAACTCCATTGATGTT
CCTAGCCATATCACCGGGCTACTCCTTCGGGGACTGGCTCTTGTGTTGCT
AAGTTAA back to topCoding sequence (CDS) from alignment at Cr_LG_3:33782219..33782775+ >Cr_07206.1_PI489777_v1 ID=Cr_07206.1_PI489777_v1; Name=Cr_07206.1; organism=Cicer reticulatum; type=CDS; length=426bp; location=Sequence derived from: Cr_LG_3:33782219..33782775+ (Cicer reticulatum
ATGATTCAGTTGTTGTTCTTGGTGCTTTTTGCTGAGGGTGCTATGGCTTT
TCTTTTGTTGGTGAAGATAGGGCCATTAAGGGATCTTGTGATGAAAAGCT
TGGATCAACTCAAGATGGGAAAAGGTCCAGCTACAGTTAAAACTATTGCT
GGAACAATGTCTGTGATTCTCCTTTCAAGTTTTATGAGTATTGTTAAGAT
CCAGAACAAAGGTGCTAAGCTTGGTACCATGTCACCTATGGATCAAGTTC
TTTGGAGAACTCACTTGCTTGAGGCTTCACTCATTGTTAGTATATATGTT
AGGGGGAGGGGAAATGTTAGGTGCCACATATTGAATCCTGGACCTCCTGC
ATACAACTCCATTGATGTTCCTAGCCATATCACCGGGCTACTCCTTCGGG
GACTGGCTCTTGTGTTGCTAAGTTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008417 | BAP29/BAP31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0005783 | endoplasmic reticulum |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006886 | intracellular protein transport |
|
