Transcript Overview
Name | Cr_19516.1 |
Unique Name | Cr_19516.1_PI489777_v1 |
Type | mRNA |
Organism | Cicer reticulatum (wild chickpea) |
Sequence length | 1555 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Cr_19516.1_PI489777_v1 | Cr_19516.1_PI489777_v1 | Cicer reticulatum | polypeptide |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 105..134 |
None | No IPR available | PANTHER | PTHR35300 | FAMILY NOT NAMED | coord: 1..377 |
None | No IPR available | PANTHER | PTHR35300:SF4 | | coord: 1..377 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1; organism=Cicer reticulatum; type=mRNA; length=1555bp ATGCCGCGGCCAGGGCCAAGGCCATACGAGTGTGTGAGAAGAGCTTGGCA CAGTGAGCGTCACCAACCTTTAAGAGGTTCCATCATTCAACATATTTTCA GGTTCTGAATTGATCTTTTTTTTTTCCCTTCTTTTTTCGTCTATTTTTAA GCTTCTACATTTTGTTGACTCGATTGCACACCATGTGTTTGATTAGGGTC GTCACTGACGCTCACACTCCTGCAACTAAGAAAAACAAGGAATGGCAAGA GAAACTTCCTGTTGTTGTTCTCAAAGCCGAAGAAATCATGTATTCCAAAG CTAATTCAGAGGTTTTTATTTTTTGTTTTTAATTTTATTTTATTTTTTAG ATTTTTTCTTGGTGTAATGTGGATTTTTTGTTTAAACCCTTTTGTTTAAT TTGTCTTGATTTGGTTGTTTAAGGCTGAGTATTCGAACCCTGATACACTA TGGGACCGTCTTAATGATGCTGTTAACACAATTATACGGAGAGATGAGAC AACTGAAACTGGTGACCTTTTGCCCCCATGTGTTGAAGGTACTCAATTTT TCATCTTTCTTTGGATCCATTTCATGGGTTTGTGTCAAAATCCTATTTTT ATGTCTCATTTGGGATGTTGAGTGTATATTTTTTTGAGCTGCTAGTGATG TGTTTTTTTTGGGTTCATTTTCTTGTGTTGAATCAGCTGCACTTAATCTG GGTTGCAAACCTGTGAAGACTTCCAGAAGTGATCGGCATAATAACCCTAG GACATACCTTGGTCCAAAACCTCAACAACCTCCTTCAGTGTCTCCTAAAC CTGTTGTTGGGAATTCCTTAAACTATGCAAAAGGGACAATTGCTTCTCTT CCGTCGATTCCTGTATCGGATACTAACCAGCATGGTCAGCAAAATAGTAA TTATCCTTATGGTTTCACATCTGGTCATCACCAGTCATTGACAATGGAAG CTAAACCGTCATTGAACATGGGTTCTGTTTACCCTTTGTACTACGGTAGT GAACCCAGAGAGCCTCAACTAAGGACGAGCGTGATACACAATACCTCTTT GGATACAATCTTTGTTGGCAGACCGGTTATTACTCCAGTCCCTGAGTCTT CTGGAATTGGTCTATTGGAAAACTCCTCCTATGGTAGGTTCCATCATGTT GGTAGTAGAATTGTACAAGAAACTGGGTTAGGCACTAAGGAGCCACCGGA TGGGCAATGTGATTTATCTTTGAGGTTGGGTCAATGTCTGCGTCCTTGTT CGAGCGGCAAAAGTAGTTCAGCATTTGAAATAGATGGTGTTGGTTTAAGT CTTTCTCATGAGGGCAATAAGTATAGTCATATGTCTTTGCAGAGAAATAG AGAATTATTTCTTTACCCTAGAGGAGGAGCCGGTTATGGTACCATTGACT CCAATTCTAGAGGCAATGTACAGGGTGAAGATCAGAACTTAGAGGCGATG TTTCGGAAGCGCAAAGCACCTTTAGCTAACAATGAGGAGGATGGGCAATT TTGCCGGCATCTAGGGGTCCCATCCAATCGTTTTACGGGTAGGCCAGGTT CGTAG back to topprotein sequence of Cr_19516.1_PI489777_v1 >Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=384bp MPRPGPRPYECVRRAWHSERHQPLRGSIIQHIFRVVTDAHTPATKKNKEW QEKLPVVAEYSNPDTLWDRLNDAVNTIIRRDETTETGDLLPPCVEAALNL GCKPVKTSRSDRHNNPRTYLGPKPQQPPSVSPKPVVGNSLNYAKGTIASL PSIPVSDTNQHGQQNSNYPYGFTSGHHQSLTMEAKPSLNMGSVYPLYYGS EPREPQLRTSVIHNTSLDTIFVGRPVITPVPESSGIGLLENSSYGRFHHV GSRIVQETGLGTKEPPDGQCDLSLRLGQCLRPCSSGKSSSAFEIDGVGLS LSHEGNKYSHMSLQRNRELFLYPRGGAGYGTIDSNSRGNVQGEDQNLEAM FRKRKAPLANNEEDGQFCRHLGVPSNRFTGRPGS back to topmRNA from alignment at Cr_LG_7:26458790..26460344- Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1; organism=Cicer reticulatum; type=mRNA; length=1555bp; location=Sequence derived from: Cr_LG_7:26458790..26460344- (Cicer reticulatum ATGCCGCGGCCAGGGCCAAGGCCATACGAGTGTGTGAGAAGAGCTTGGCA
CAGTGAGCGTCACCAACCTTTAAGAGGTTCCATCATTCAACATATTTTCA
GGTTCTGAATTGATCTTTTTTTTTTCCCTTCTTTTTTCGTCTATTTTTAA
GCTTCTACATTTTGTTGACTCGATTGCACACCATGTGTTTGATTAGGGTC
GTCACTGACGCTCACACTCCTGCAACTAAGAAAAACAAGGAATGGCAAGA
GAAACTTCCTGTTGTTGTTCTCAAAGCCGAAGAAATCATGTATTCCAAAG
CTAATTCAGAGGTTTTTATTTTTTGTTTTTAATTTTATTTTATTTTTTAG
ATTTTTTCTTGGTGTAATGTGGATTTTTTGTTTAAACCCTTTTGTTTAAT
TTGTCTTGATTTGGTTGTTTAAGGCTGAGTATTCGAACCCTGATACACTA
TGGGACCGTCTTAATGATGCTGTTAACACAATTATACGGAGAGATGAGAC
AACTGAAACTGGTGACCTTTTGCCCCCATGTGTTGAAGGTACTCAATTTT
TCATCTTTCTTTGGATCCATTTCATGGGTTTGTGTCAAAATCCTATTTTT
ATGTCTCATTTGGGATGTTGAGTGTATATTTTTTTGAGCTGCTAGTGATG
TGTTTTTTTTGGGTTCATTTTCTTGTGTTGAATCAGCTGCACTTAATCTG
GGTTGCAAACCTGTGAAGACTTCCAGAAGTGATCGGCATAATAACCCTAG
GACATACCTTGGTCCAAAACCTCAACAACCTCCTTCAGTGTCTCCTAAAC
CTGTTGTTGGGAATTCCTTAAACTATGCAAAAGGGACAATTGCTTCTCTT
CCGTCGATTCCTGTATCGGATACTAACCAGCATGGTCAGCAAAATAGTAA
TTATCCTTATGGTTTCACATCTGGTCATCACCAGTCATTGACAATGGAAG
CTAAACCGTCATTGAACATGGGTTCTGTTTACCCTTTGTACTACGGTAGT
GAACCCAGAGAGCCTCAACTAAGGACGAGCGTGATACACAATACCTCTTT
GGATACAATCTTTGTTGGCAGACCGGTTATTACTCCAGTCCCTGAGTCTT
CTGGAATTGGTCTATTGGAAAACTCCTCCTATGGTAGGTTCCATCATGTT
GGTAGTAGAATTGTACAAGAAACTGGGTTAGGCACTAAGGAGCCACCGGA
TGGGCAATGTGATTTATCTTTGAGGTTGGGTCAATGTCTGCGTCCTTGTT
CGAGCGGCAAAAGTAGTTCAGCATTTGAAATAGATGGTGTTGGTTTAAGT
CTTTCTCATGAGGGCAATAAGTATAGTCATATGTCTTTGCAGAGAAATAG
AGAATTATTTCTTTACCCTAGAGGAGGAGCCGGTTATGGTACCATTGACT
CCAATTCTAGAGGCAATGTACAGGGTGAAGATCAGAACTTAGAGGCGATG
TTTCGGAAGCGCAAAGCACCTTTAGCTAACAATGAGGAGGATGGGCAATT
TTGCCGGCATCTAGGGGTCCCATCCAATCGTTTTACGGGTAGGCCAGGTT
CGTAG back to topCoding sequence (CDS) from alignment at Cr_LG_7:26458790..26460344- >Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1; organism=Cicer reticulatum; type=CDS; length=1155bp; location=Sequence derived from: Cr_LG_7:26458790..26460344- (Cicer reticulatum ATGCCGCGGCCAGGGCCAAGGCCATACGAGTGTGTGAGAAGAGCTTGGCA CAGTGAGCGTCACCAACCTTTAAGAGGTTCCATCATTCAACATATTTTCA GGGTCGTCACTGACGCTCACACTCCTGCAACTAAGAAAAACAAGGAATGG CAAGAGAAACTTCCTGTTGTTGCTGAGTATTCGAACCCTGATACACTATG GGACCGTCTTAATGATGCTGTTAACACAATTATACGGAGAGATGAGACAA CTGAAACTGGTGACCTTTTGCCCCCATGTGTTGAAGCTGCACTTAATCTG GGTTGCAAACCTGTGAAGACTTCCAGAAGTGATCGGCATAATAACCCTAG GACATACCTTGGTCCAAAACCTCAACAACCTCCTTCAGTGTCTCCTAAAC CTGTTGTTGGGAATTCCTTAAACTATGCAAAAGGGACAATTGCTTCTCTT CCGTCGATTCCTGTATCGGATACTAACCAGCATGGTCAGCAAAATAGTAA TTATCCTTATGGTTTCACATCTGGTCATCACCAGTCATTGACAATGGAAG CTAAACCGTCATTGAACATGGGTTCTGTTTACCCTTTGTACTACGGTAGT GAACCCAGAGAGCCTCAACTAAGGACGAGCGTGATACACAATACCTCTTT GGATACAATCTTTGTTGGCAGACCGGTTATTACTCCAGTCCCTGAGTCTT CTGGAATTGGTCTATTGGAAAACTCCTCCTATGGTAGGTTCCATCATGTT GGTAGTAGAATTGTACAAGAAACTGGGTTAGGCACTAAGGAGCCACCGGA TGGGCAATGTGATTTATCTTTGAGGTTGGGTCAATGTCTGCGTCCTTGTT CGAGCGGCAAAAGTAGTTCAGCATTTGAAATAGATGGTGTTGGTTTAAGT CTTTCTCATGAGGGCAATAAGTATAGTCATATGTCTTTGCAGAGAAATAG AGAATTATTTCTTTACCCTAGAGGAGGAGCCGGTTATGGTACCATTGACT CCAATTCTAGAGGCAATGTACAGGGTGAAGATCAGAACTTAGAGGCGATG TTTCGGAAGCGCAAAGCACCTTTAGCTAACAATGAGGAGGATGGGCAATT TTGCCGGCATCTAGGGGTCCCATCCAATCGTTTTACGGGTAGGCCAGGTT CGTAG back to top
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