Cr_19516.1, Cr_19516.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview


Name	Cr_19516.1
Unique Name	Cr_19516.1_PI489777_v1
Type	mRNA
Organism	Cicer reticulatum (wild chickpea)
Sequence length	1555

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Cr_LG_7	supercontig	Cr_LG_7:26458790..26460344 -	Cicer reticulatum L. PI489777 genome v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer reticulatum L. PI489777 genome v1	2016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot	2019-05-21
InterProScan: C. reticulatum PI489777 genome v1	2019-05-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
crpsR693	Pisum sativum Cameor genome v1a	Pisum sativum
crpsR713	Pisum sativum Cameor genome v1a	Pisum sativum
crpsR714	Pisum sativum Cameor genome v1a	Pisum sativum
crvuR759	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuR795	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuR857	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crpvR838	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
crpvR904	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
cccrL0185	Cajanus cajan Asha genome v1.0	Cajanus cajan
cccrL0426	Cajanus cajan Asha genome v1.0	Cajanus cajan
cccrL0461	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrL0058	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0059	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0294	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0415	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0486	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0946	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascrL098	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ascrL676	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ascrL749	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
crzwsR749	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crzwsR781	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crtifR751	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crtifR755	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crtifR757	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crvfhR767	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvfhR768	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvfhR771	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvrvR719	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvrvR730	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvssR834	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvssR838	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvssR843	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvssR853	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvuaR790	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
crvuaR833	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
cancrL100	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
cancrL572	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
cancrL714	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
cancrL820	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
rna-TanjilR_07006	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
LR48_mrnaVigan04g219500	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Psat04G0130800-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Vfaba.Tiffany.R1.4g134640.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Psat4g037120.1	Pisum sativum Cameor genome v1a	Pisum sativum
evm.model.Chr03.1845	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
jg19505.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
evm.model.Chr09.1610	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vigun03g358000.2	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-TanjilR_26239	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_13337	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Vfaba.Hedin2.R1.4g177520.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigun09g210100.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_004508419.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
LR48_mrnaVigan01g257200	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
rna-KK1_035143	Cajanus cajan Asha genome v1.0	Cajanus cajan
rna-XM_014644729.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Phvul.009G092700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Phvul.003G166900.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-KK1_001946	Cajanus cajan Asha genome v1.0	Cajanus cajan

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cr_19516	Cr_19516_PI489777_v1	Cicer reticulatum	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19516.1:cds4	Cr_19516.1:cds4_PI489777_v1	Cicer reticulatum	CDS
Cr_19516.1:cds3	Cr_19516.1:cds3_PI489777_v1	Cicer reticulatum	CDS
Cr_19516.1:cds2	Cr_19516.1:cds2_PI489777_v1	Cicer reticulatum	CDS
Cr_19516.1:cds1	Cr_19516.1:cds1_PI489777_v1	Cicer reticulatum	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19516.1:exon4	Cr_19516.1:exon4_PI489777_v1	Cicer reticulatum	exon
Cr_19516.1:exon3	Cr_19516.1:exon3_PI489777_v1	Cicer reticulatum	exon
Cr_19516.1:exon2	Cr_19516.1:exon2_PI489777_v1	Cicer reticulatum	exon
Cr_19516.1:exon1	Cr_19516.1:exon1_PI489777_v1	Cicer reticulatum	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19516.1_PI489777_v1	Cr_19516.1_PI489777_v1	Cicer reticulatum	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of Cr_19516.1 vs. DB:Swiss

BLAST of Cr_19516.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..134
None	No IPR available	PANTHER	PTHR35300	FAMILY NOT NAMED	coord: 1..377
None	No IPR available	PANTHER	PTHR35300:SF4		coord: 1..377

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Cr_LG_7:26458790..26460344-
coding sequence from alignment at Cr_LG_7:26458790..26460344-

mRNA sequence

>Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1; organism=Cicer reticulatum; type=mRNA; length=1555bp
ATGCCGCGGCCAGGGCCAAGGCCATACGAGTGTGTGAGAAGAGCTTGGCA
CAGTGAGCGTCACCAACCTTTAAGAGGTTCCATCATTCAACATATTTTCA
GGTTCTGAATTGATCTTTTTTTTTTCCCTTCTTTTTTCGTCTATTTTTAA
GCTTCTACATTTTGTTGACTCGATTGCACACCATGTGTTTGATTAGGGTC
GTCACTGACGCTCACACTCCTGCAACTAAGAAAAACAAGGAATGGCAAGA
GAAACTTCCTGTTGTTGTTCTCAAAGCCGAAGAAATCATGTATTCCAAAG
CTAATTCAGAGGTTTTTATTTTTTGTTTTTAATTTTATTTTATTTTTTAG
ATTTTTTCTTGGTGTAATGTGGATTTTTTGTTTAAACCCTTTTGTTTAAT
TTGTCTTGATTTGGTTGTTTAAGGCTGAGTATTCGAACCCTGATACACTA
TGGGACCGTCTTAATGATGCTGTTAACACAATTATACGGAGAGATGAGAC
AACTGAAACTGGTGACCTTTTGCCCCCATGTGTTGAAGGTACTCAATTTT
TCATCTTTCTTTGGATCCATTTCATGGGTTTGTGTCAAAATCCTATTTTT
ATGTCTCATTTGGGATGTTGAGTGTATATTTTTTTGAGCTGCTAGTGATG
TGTTTTTTTTGGGTTCATTTTCTTGTGTTGAATCAGCTGCACTTAATCTG
GGTTGCAAACCTGTGAAGACTTCCAGAAGTGATCGGCATAATAACCCTAG
GACATACCTTGGTCCAAAACCTCAACAACCTCCTTCAGTGTCTCCTAAAC
CTGTTGTTGGGAATTCCTTAAACTATGCAAAAGGGACAATTGCTTCTCTT
CCGTCGATTCCTGTATCGGATACTAACCAGCATGGTCAGCAAAATAGTAA
TTATCCTTATGGTTTCACATCTGGTCATCACCAGTCATTGACAATGGAAG
CTAAACCGTCATTGAACATGGGTTCTGTTTACCCTTTGTACTACGGTAGT
GAACCCAGAGAGCCTCAACTAAGGACGAGCGTGATACACAATACCTCTTT
GGATACAATCTTTGTTGGCAGACCGGTTATTACTCCAGTCCCTGAGTCTT
CTGGAATTGGTCTATTGGAAAACTCCTCCTATGGTAGGTTCCATCATGTT
GGTAGTAGAATTGTACAAGAAACTGGGTTAGGCACTAAGGAGCCACCGGA
TGGGCAATGTGATTTATCTTTGAGGTTGGGTCAATGTCTGCGTCCTTGTT
CGAGCGGCAAAAGTAGTTCAGCATTTGAAATAGATGGTGTTGGTTTAAGT
CTTTCTCATGAGGGCAATAAGTATAGTCATATGTCTTTGCAGAGAAATAG
AGAATTATTTCTTTACCCTAGAGGAGGAGCCGGTTATGGTACCATTGACT
CCAATTCTAGAGGCAATGTACAGGGTGAAGATCAGAACTTAGAGGCGATG
TTTCGGAAGCGCAAAGCACCTTTAGCTAACAATGAGGAGGATGGGCAATT
TTGCCGGCATCTAGGGGTCCCATCCAATCGTTTTACGGGTAGGCCAGGTT
CGTAG

protein sequence of Cr_19516.1_PI489777_v1

>Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=384bp
MPRPGPRPYECVRRAWHSERHQPLRGSIIQHIFRVVTDAHTPATKKNKEW
QEKLPVVAEYSNPDTLWDRLNDAVNTIIRRDETTETGDLLPPCVEAALNL
GCKPVKTSRSDRHNNPRTYLGPKPQQPPSVSPKPVVGNSLNYAKGTIASL
PSIPVSDTNQHGQQNSNYPYGFTSGHHQSLTMEAKPSLNMGSVYPLYYGS
EPREPQLRTSVIHNTSLDTIFVGRPVITPVPESSGIGLLENSSYGRFHHV
GSRIVQETGLGTKEPPDGQCDLSLRLGQCLRPCSSGKSSSAFEIDGVGLS
LSHEGNKYSHMSLQRNRELFLYPRGGAGYGTIDSNSRGNVQGEDQNLEAM
FRKRKAPLANNEEDGQFCRHLGVPSNRFTGRPGS

mRNA from alignment at Cr_LG_7:26458790..26460344-

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1; organism=Cicer reticulatum; type=mRNA; length=1555bp; location=Sequence derived from: Cr_LG_7:26458790..26460344- (Cicer reticulatum
ATGCCGCGGCCAGGGCCAAGGCCATACGAGTGTGTGAGAAGAGCTTGGCA
CAGTGAGCGTCACCAACCTTTAAGAGGTTCCATCATTCAACATATTTTCA
GGTTCTGAATTGATCTTTTTTTTTTCCCTTCTTTTTTCGTCTATTTTTAA
GCTTCTACATTTTGTTGACTCGATTGCACACCATGTGTTTGATTAGGGTC
GTCACTGACGCTCACACTCCTGCAACTAAGAAAAACAAGGAATGGCAAGA
GAAACTTCCTGTTGTTGTTCTCAAAGCCGAAGAAATCATGTATTCCAAAG
CTAATTCAGAGGTTTTTATTTTTTGTTTTTAATTTTATTTTATTTTTTAG
ATTTTTTCTTGGTGTAATGTGGATTTTTTGTTTAAACCCTTTTGTTTAAT
TTGTCTTGATTTGGTTGTTTAAGGCTGAGTATTCGAACCCTGATACACTA
TGGGACCGTCTTAATGATGCTGTTAACACAATTATACGGAGAGATGAGAC
AACTGAAACTGGTGACCTTTTGCCCCCATGTGTTGAAGGTACTCAATTTT
TCATCTTTCTTTGGATCCATTTCATGGGTTTGTGTCAAAATCCTATTTTT
ATGTCTCATTTGGGATGTTGAGTGTATATTTTTTTGAGCTGCTAGTGATG
TGTTTTTTTTGGGTTCATTTTCTTGTGTTGAATCAGCTGCACTTAATCTG
GGTTGCAAACCTGTGAAGACTTCCAGAAGTGATCGGCATAATAACCCTAG
GACATACCTTGGTCCAAAACCTCAACAACCTCCTTCAGTGTCTCCTAAAC
CTGTTGTTGGGAATTCCTTAAACTATGCAAAAGGGACAATTGCTTCTCTT
CCGTCGATTCCTGTATCGGATACTAACCAGCATGGTCAGCAAAATAGTAA
TTATCCTTATGGTTTCACATCTGGTCATCACCAGTCATTGACAATGGAAG
CTAAACCGTCATTGAACATGGGTTCTGTTTACCCTTTGTACTACGGTAGT
GAACCCAGAGAGCCTCAACTAAGGACGAGCGTGATACACAATACCTCTTT
GGATACAATCTTTGTTGGCAGACCGGTTATTACTCCAGTCCCTGAGTCTT
CTGGAATTGGTCTATTGGAAAACTCCTCCTATGGTAGGTTCCATCATGTT
GGTAGTAGAATTGTACAAGAAACTGGGTTAGGCACTAAGGAGCCACCGGA
TGGGCAATGTGATTTATCTTTGAGGTTGGGTCAATGTCTGCGTCCTTGTT
CGAGCGGCAAAAGTAGTTCAGCATTTGAAATAGATGGTGTTGGTTTAAGT
CTTTCTCATGAGGGCAATAAGTATAGTCATATGTCTTTGCAGAGAAATAG
AGAATTATTTCTTTACCCTAGAGGAGGAGCCGGTTATGGTACCATTGACT
CCAATTCTAGAGGCAATGTACAGGGTGAAGATCAGAACTTAGAGGCGATG
TTTCGGAAGCGCAAAGCACCTTTAGCTAACAATGAGGAGGATGGGCAATT
TTGCCGGCATCTAGGGGTCCCATCCAATCGTTTTACGGGTAGGCCAGGTT
CGTAG

Coding sequence (CDS) from alignment at Cr_LG_7:26458790..26460344-

>Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1; organism=Cicer reticulatum; type=CDS; length=1155bp; location=Sequence derived from: Cr_LG_7:26458790..26460344- (Cicer reticulatum
ATGCCGCGGCCAGGGCCAAGGCCATACGAGTGTGTGAGAAGAGCTTGGCA
CAGTGAGCGTCACCAACCTTTAAGAGGTTCCATCATTCAACATATTTTCA
GGGTCGTCACTGACGCTCACACTCCTGCAACTAAGAAAAACAAGGAATGG
CAAGAGAAACTTCCTGTTGTTGCTGAGTATTCGAACCCTGATACACTATG
GGACCGTCTTAATGATGCTGTTAACACAATTATACGGAGAGATGAGACAA
CTGAAACTGGTGACCTTTTGCCCCCATGTGTTGAAGCTGCACTTAATCTG
GGTTGCAAACCTGTGAAGACTTCCAGAAGTGATCGGCATAATAACCCTAG
GACATACCTTGGTCCAAAACCTCAACAACCTCCTTCAGTGTCTCCTAAAC
CTGTTGTTGGGAATTCCTTAAACTATGCAAAAGGGACAATTGCTTCTCTT
CCGTCGATTCCTGTATCGGATACTAACCAGCATGGTCAGCAAAATAGTAA
TTATCCTTATGGTTTCACATCTGGTCATCACCAGTCATTGACAATGGAAG
CTAAACCGTCATTGAACATGGGTTCTGTTTACCCTTTGTACTACGGTAGT
GAACCCAGAGAGCCTCAACTAAGGACGAGCGTGATACACAATACCTCTTT
GGATACAATCTTTGTTGGCAGACCGGTTATTACTCCAGTCCCTGAGTCTT
CTGGAATTGGTCTATTGGAAAACTCCTCCTATGGTAGGTTCCATCATGTT
GGTAGTAGAATTGTACAAGAAACTGGGTTAGGCACTAAGGAGCCACCGGA
TGGGCAATGTGATTTATCTTTGAGGTTGGGTCAATGTCTGCGTCCTTGTT
CGAGCGGCAAAAGTAGTTCAGCATTTGAAATAGATGGTGTTGGTTTAAGT
CTTTCTCATGAGGGCAATAAGTATAGTCATATGTCTTTGCAGAGAAATAG
AGAATTATTTCTTTACCCTAGAGGAGGAGCCGGTTATGGTACCATTGACT
CCAATTCTAGAGGCAATGTACAGGGTGAAGATCAGAACTTAGAGGCGATG
TTTCGGAAGCGCAAAGCACCTTTAGCTAACAATGAGGAGGATGGGCAATT
TTGCCGGCATCTAGGGGTCCCATCCAATCGTTTTACGGGTAGGCCAGGTT
CGTAG

Search form

Cr_19516.1, Cr_19516.1_PI489777_v1 (mRNA) Cicer reticulatum