Cr_19516.1, Cr_19516.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview
NameCr_19516.1
Unique NameCr_19516.1_PI489777_v1
TypemRNA
OrganismCicer reticulatum (wild chickpea)
Sequence length1555
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Cr_LG_7supercontigCr_LG_7:26458790..26460344 -Cicer reticulatum L. PI489777 genome v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer reticulatum L. PI489777 genome v12016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot2019-05-21
InterProScan: C. reticulatum PI489777 genome v12019-05-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
crpsR693Pisum sativum Cameor genome v1aPisum sativum
crpsR713Pisum sativum Cameor genome v1aPisum sativum
crpsR714Pisum sativum Cameor genome v1aPisum sativum
crvuR759Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR795Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR857Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crpvR838Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR904Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cccrL0185Cajanus cajan Asha genome v1.0Cajanus cajan
cccrL0426Cajanus cajan Asha genome v1.0Cajanus cajan
cccrL0461Cajanus cajan Asha genome v1.0Cajanus cajan
ancrL0058Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0294Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0415Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0486Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0946Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascrL098Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL676Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL749Vigna angularis Jingnong 6 genome v1.1Vigna angularis
crzwsR749Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR781Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crtifR751Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR755Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR757Vicia faba cv. Tiffany genome v1.0Vicia faba
crvfhR767Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR768Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR771Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvrvR719Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR730Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvssR834Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR838Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR843Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR853Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvuaR790Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR833Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cancrL100Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancrL572Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancrL714Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cancrL820Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_07006Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
LR48_mrnaVigan04g219500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat04G0130800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Tiffany.R1.4g134640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat4g037120.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr03.1845Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg19505.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr09.1610Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun03g358000.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_26239Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_13337Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.4g177520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun09g210100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_004508419.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan01g257200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_035143Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014644729.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.009G092700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Phvul.003G166900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_001946Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cr_19516Cr_19516_PI489777_v1Cicer reticulatumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19516.1:cds4Cr_19516.1:cds4_PI489777_v1Cicer reticulatumCDS
Cr_19516.1:cds3Cr_19516.1:cds3_PI489777_v1Cicer reticulatumCDS
Cr_19516.1:cds2Cr_19516.1:cds2_PI489777_v1Cicer reticulatumCDS
Cr_19516.1:cds1Cr_19516.1:cds1_PI489777_v1Cicer reticulatumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19516.1:exon4Cr_19516.1:exon4_PI489777_v1Cicer reticulatumexon
Cr_19516.1:exon3Cr_19516.1:exon3_PI489777_v1Cicer reticulatumexon
Cr_19516.1:exon2Cr_19516.1:exon2_PI489777_v1Cicer reticulatumexon
Cr_19516.1:exon1Cr_19516.1:exon1_PI489777_v1Cicer reticulatumexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cr_19516.1_PI489777_v1Cr_19516.1_PI489777_v1Cicer reticulatumpolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Cr_19516.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..134
NoneNo IPR availablePANTHERPTHR35300FAMILY NOT NAMEDcoord: 1..377
NoneNo IPR availablePANTHERPTHR35300:SF4coord: 1..377

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1; organism=Cicer reticulatum; type=mRNA; length=1555bp
ATGCCGCGGCCAGGGCCAAGGCCATACGAGTGTGTGAGAAGAGCTTGGCA
CAGTGAGCGTCACCAACCTTTAAGAGGTTCCATCATTCAACATATTTTCA
GGTTCTGAATTGATCTTTTTTTTTTCCCTTCTTTTTTCGTCTATTTTTAA
GCTTCTACATTTTGTTGACTCGATTGCACACCATGTGTTTGATTAGGGTC
GTCACTGACGCTCACACTCCTGCAACTAAGAAAAACAAGGAATGGCAAGA
GAAACTTCCTGTTGTTGTTCTCAAAGCCGAAGAAATCATGTATTCCAAAG
CTAATTCAGAGGTTTTTATTTTTTGTTTTTAATTTTATTTTATTTTTTAG
ATTTTTTCTTGGTGTAATGTGGATTTTTTGTTTAAACCCTTTTGTTTAAT
TTGTCTTGATTTGGTTGTTTAAGGCTGAGTATTCGAACCCTGATACACTA
TGGGACCGTCTTAATGATGCTGTTAACACAATTATACGGAGAGATGAGAC
AACTGAAACTGGTGACCTTTTGCCCCCATGTGTTGAAGGTACTCAATTTT
TCATCTTTCTTTGGATCCATTTCATGGGTTTGTGTCAAAATCCTATTTTT
ATGTCTCATTTGGGATGTTGAGTGTATATTTTTTTGAGCTGCTAGTGATG
TGTTTTTTTTGGGTTCATTTTCTTGTGTTGAATCAGCTGCACTTAATCTG
GGTTGCAAACCTGTGAAGACTTCCAGAAGTGATCGGCATAATAACCCTAG
GACATACCTTGGTCCAAAACCTCAACAACCTCCTTCAGTGTCTCCTAAAC
CTGTTGTTGGGAATTCCTTAAACTATGCAAAAGGGACAATTGCTTCTCTT
CCGTCGATTCCTGTATCGGATACTAACCAGCATGGTCAGCAAAATAGTAA
TTATCCTTATGGTTTCACATCTGGTCATCACCAGTCATTGACAATGGAAG
CTAAACCGTCATTGAACATGGGTTCTGTTTACCCTTTGTACTACGGTAGT
GAACCCAGAGAGCCTCAACTAAGGACGAGCGTGATACACAATACCTCTTT
GGATACAATCTTTGTTGGCAGACCGGTTATTACTCCAGTCCCTGAGTCTT
CTGGAATTGGTCTATTGGAAAACTCCTCCTATGGTAGGTTCCATCATGTT
GGTAGTAGAATTGTACAAGAAACTGGGTTAGGCACTAAGGAGCCACCGGA
TGGGCAATGTGATTTATCTTTGAGGTTGGGTCAATGTCTGCGTCCTTGTT
CGAGCGGCAAAAGTAGTTCAGCATTTGAAATAGATGGTGTTGGTTTAAGT
CTTTCTCATGAGGGCAATAAGTATAGTCATATGTCTTTGCAGAGAAATAG
AGAATTATTTCTTTACCCTAGAGGAGGAGCCGGTTATGGTACCATTGACT
CCAATTCTAGAGGCAATGTACAGGGTGAAGATCAGAACTTAGAGGCGATG
TTTCGGAAGCGCAAAGCACCTTTAGCTAACAATGAGGAGGATGGGCAATT
TTGCCGGCATCTAGGGGTCCCATCCAATCGTTTTACGGGTAGGCCAGGTT
CGTAG
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protein sequence of Cr_19516.1_PI489777_v1

>Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=384bp
MPRPGPRPYECVRRAWHSERHQPLRGSIIQHIFRVVTDAHTPATKKNKEW
QEKLPVVAEYSNPDTLWDRLNDAVNTIIRRDETTETGDLLPPCVEAALNL
GCKPVKTSRSDRHNNPRTYLGPKPQQPPSVSPKPVVGNSLNYAKGTIASL
PSIPVSDTNQHGQQNSNYPYGFTSGHHQSLTMEAKPSLNMGSVYPLYYGS
EPREPQLRTSVIHNTSLDTIFVGRPVITPVPESSGIGLLENSSYGRFHHV
GSRIVQETGLGTKEPPDGQCDLSLRLGQCLRPCSSGKSSSAFEIDGVGLS
LSHEGNKYSHMSLQRNRELFLYPRGGAGYGTIDSNSRGNVQGEDQNLEAM
FRKRKAPLANNEEDGQFCRHLGVPSNRFTGRPGS
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mRNA from alignment at Cr_LG_7:26458790..26460344-

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1; organism=Cicer reticulatum; type=mRNA; length=1555bp; location=Sequence derived from: Cr_LG_7:26458790..26460344- (Cicer reticulatum
ATGCCGCGGCCAGGGCCAAGGCCATACGAGTGTGTGAGAAGAGCTTGGCA
CAGTGAGCGTCACCAACCTTTAAGAGGTTCCATCATTCAACATATTTTCA
GGTTCTGAATTGATCTTTTTTTTTTCCCTTCTTTTTTCGTCTATTTTTAA
GCTTCTACATTTTGTTGACTCGATTGCACACCATGTGTTTGATTAGGGTC
GTCACTGACGCTCACACTCCTGCAACTAAGAAAAACAAGGAATGGCAAGA
GAAACTTCCTGTTGTTGTTCTCAAAGCCGAAGAAATCATGTATTCCAAAG
CTAATTCAGAGGTTTTTATTTTTTGTTTTTAATTTTATTTTATTTTTTAG
ATTTTTTCTTGGTGTAATGTGGATTTTTTGTTTAAACCCTTTTGTTTAAT
TTGTCTTGATTTGGTTGTTTAAGGCTGAGTATTCGAACCCTGATACACTA
TGGGACCGTCTTAATGATGCTGTTAACACAATTATACGGAGAGATGAGAC
AACTGAAACTGGTGACCTTTTGCCCCCATGTGTTGAAGGTACTCAATTTT
TCATCTTTCTTTGGATCCATTTCATGGGTTTGTGTCAAAATCCTATTTTT
ATGTCTCATTTGGGATGTTGAGTGTATATTTTTTTGAGCTGCTAGTGATG
TGTTTTTTTTGGGTTCATTTTCTTGTGTTGAATCAGCTGCACTTAATCTG
GGTTGCAAACCTGTGAAGACTTCCAGAAGTGATCGGCATAATAACCCTAG
GACATACCTTGGTCCAAAACCTCAACAACCTCCTTCAGTGTCTCCTAAAC
CTGTTGTTGGGAATTCCTTAAACTATGCAAAAGGGACAATTGCTTCTCTT
CCGTCGATTCCTGTATCGGATACTAACCAGCATGGTCAGCAAAATAGTAA
TTATCCTTATGGTTTCACATCTGGTCATCACCAGTCATTGACAATGGAAG
CTAAACCGTCATTGAACATGGGTTCTGTTTACCCTTTGTACTACGGTAGT
GAACCCAGAGAGCCTCAACTAAGGACGAGCGTGATACACAATACCTCTTT
GGATACAATCTTTGTTGGCAGACCGGTTATTACTCCAGTCCCTGAGTCTT
CTGGAATTGGTCTATTGGAAAACTCCTCCTATGGTAGGTTCCATCATGTT
GGTAGTAGAATTGTACAAGAAACTGGGTTAGGCACTAAGGAGCCACCGGA
TGGGCAATGTGATTTATCTTTGAGGTTGGGTCAATGTCTGCGTCCTTGTT
CGAGCGGCAAAAGTAGTTCAGCATTTGAAATAGATGGTGTTGGTTTAAGT
CTTTCTCATGAGGGCAATAAGTATAGTCATATGTCTTTGCAGAGAAATAG
AGAATTATTTCTTTACCCTAGAGGAGGAGCCGGTTATGGTACCATTGACT
CCAATTCTAGAGGCAATGTACAGGGTGAAGATCAGAACTTAGAGGCGATG
TTTCGGAAGCGCAAAGCACCTTTAGCTAACAATGAGGAGGATGGGCAATT
TTGCCGGCATCTAGGGGTCCCATCCAATCGTTTTACGGGTAGGCCAGGTT
CGTAG
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Coding sequence (CDS) from alignment at Cr_LG_7:26458790..26460344-

>Cr_19516.1_PI489777_v1 ID=Cr_19516.1_PI489777_v1; Name=Cr_19516.1; organism=Cicer reticulatum; type=CDS; length=1155bp; location=Sequence derived from: Cr_LG_7:26458790..26460344- (Cicer reticulatum
ATGCCGCGGCCAGGGCCAAGGCCATACGAGTGTGTGAGAAGAGCTTGGCA
CAGTGAGCGTCACCAACCTTTAAGAGGTTCCATCATTCAACATATTTTCA
GGGTCGTCACTGACGCTCACACTCCTGCAACTAAGAAAAACAAGGAATGG
CAAGAGAAACTTCCTGTTGTTGCTGAGTATTCGAACCCTGATACACTATG
GGACCGTCTTAATGATGCTGTTAACACAATTATACGGAGAGATGAGACAA
CTGAAACTGGTGACCTTTTGCCCCCATGTGTTGAAGCTGCACTTAATCTG
GGTTGCAAACCTGTGAAGACTTCCAGAAGTGATCGGCATAATAACCCTAG
GACATACCTTGGTCCAAAACCTCAACAACCTCCTTCAGTGTCTCCTAAAC
CTGTTGTTGGGAATTCCTTAAACTATGCAAAAGGGACAATTGCTTCTCTT
CCGTCGATTCCTGTATCGGATACTAACCAGCATGGTCAGCAAAATAGTAA
TTATCCTTATGGTTTCACATCTGGTCATCACCAGTCATTGACAATGGAAG
CTAAACCGTCATTGAACATGGGTTCTGTTTACCCTTTGTACTACGGTAGT
GAACCCAGAGAGCCTCAACTAAGGACGAGCGTGATACACAATACCTCTTT
GGATACAATCTTTGTTGGCAGACCGGTTATTACTCCAGTCCCTGAGTCTT
CTGGAATTGGTCTATTGGAAAACTCCTCCTATGGTAGGTTCCATCATGTT
GGTAGTAGAATTGTACAAGAAACTGGGTTAGGCACTAAGGAGCCACCGGA
TGGGCAATGTGATTTATCTTTGAGGTTGGGTCAATGTCTGCGTCCTTGTT
CGAGCGGCAAAAGTAGTTCAGCATTTGAAATAGATGGTGTTGGTTTAAGT
CTTTCTCATGAGGGCAATAAGTATAGTCATATGTCTTTGCAGAGAAATAG
AGAATTATTTCTTTACCCTAGAGGAGGAGCCGGTTATGGTACCATTGACT
CCAATTCTAGAGGCAATGTACAGGGTGAAGATCAGAACTTAGAGGCGATG
TTTCGGAAGCGCAAAGCACCTTTAGCTAACAATGAGGAGGATGGGCAATT
TTGCCGGCATCTAGGGGTCCCATCCAATCGTTTTACGGGTAGGCCAGGTT
CGTAG
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