Cr_19561.1, Cr_19561.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview


Name	Cr_19561.1
Unique Name	Cr_19561.1_PI489777_v1
Type	mRNA
Organism	Cicer reticulatum (wild chickpea)
Sequence length	1020

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Cr_LG_7	supercontig	Cr_LG_7:26961787..26962806 +	Cicer reticulatum L. PI489777 genome v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer reticulatum L. PI489777 genome v1	2016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot	2019-05-21
InterProScan: C. reticulatum PI489777 genome v1	2019-05-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
crpsR712	Pisum sativum Cameor genome v1a	Pisum sativum
crpsR714	Pisum sativum Cameor genome v1a	Pisum sativum
crpsR728	Pisum sativum Cameor genome v1a	Pisum sativum
crvuR795	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuR856	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuR857	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crpvR838	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
crpvR903	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
crpvR904	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
cccrL0427	Cajanus cajan Asha genome v1.0	Cajanus cajan
cccrL0756	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrL0058	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0059	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0294	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0415	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0487	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ascrL098	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ascrL676	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
ascrL679	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
crzwsR695	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crzwsR749	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crzwsR781	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crtifR744	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crtifR755	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crtifR757	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crvfhR759	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvfhR768	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvfhR771	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvrvR719	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvrvR723	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvrvR730	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvssR843	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvssR853	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvuaR790	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
crvuaR833	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
crvuaR834	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
cancrL820	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
jg19610.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigun03g363500.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-TanjilR_13355	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-XM_004508360.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
rna-TanjilR_26224	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-KK1_003600	Cajanus cajan Asha genome v1.0	Cajanus cajan
Phvul.003G172100.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Psat4g035080.1	Pisum sativum Cameor genome v1a	Pisum sativum
LR48_mrnaVigan01g252100	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vfaba.Hedin2.R1.4g181600.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vfaba.Tiffany.R1.4g137320.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
rna-XM_014653696.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Psat04G0121500-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cr_19561	Cr_19561_PI489777_v1	Cicer reticulatum	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19561.1:utr5p1	Cr_19561.1:utr5p1_PI489777_v1	Cicer reticulatum	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19561.1:exon1	Cr_19561.1:exon1_PI489777_v1	Cicer reticulatum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19561.1:cds1	Cr_19561.1:cds1_PI489777_v1	Cicer reticulatum	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19561.1:utr3p1	Cr_19561.1:utr3p1_PI489777_v1	Cicer reticulatum	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19561.1_PI489777_v1	Cr_19561.1_PI489777_v1	Cicer reticulatum	polypeptide

Homology

[Close]

BLAST of Cr_19561.1 vs. DB:Swiss
Match: TTM3_ARATH (Triphosphate tunel metalloenzyme 3 OS=Arabidopsis thaliana OX=3702 GN=TTM3 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.657e-63
Identity = 113/210 (53.81%), Postives = 151/210 (71.90%), Query Frame = 1

Query:    1 MEVEVKLRLANAESHRHVTTLLSPFHVITHRQHNLFFDGAASELSSRRAVLRLRFYND---------DERCVVSLKAKAVLVDGVSRVEEDEEDFDPKVGRDCVAEPGKLGFVESRILRRVKDEFGVVGENGYVGLGGFRNVRSVFDWKGLKLEVDETDFGFGTLYEIECESADPDEAKRILEEFLKENGIDYSYSVVSKFAIFRSGKLP 603
            MEVEVKLRL  A +H  +TTLL+P+H+ T  Q N FFD   ++LS RRAVLRLRF  +           RC+VSLKAK  L +G+SRVEEDEE+ +  +G++CV  P KL  + SR+L+RVK+E+G     G+V LGGF NVR+V++W+G+KLEVDET + FG  YEIECE+ +P+  K ++EEFL E  I++S S ++KFA+FRSGKLP
Sbjct:    1 MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210

The following BLAST results are available for this feature:

BLAST of Cr_19561.1 vs. DB:Swiss

BLAST of Cr_19561.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
TTM3_ARATH	4.657e-63	53.81	Triphosphate tunel metalloenzyme 3 OS=Arabidopsis ...	[more]

InterPro

Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023577	CYTH domain	SMART	SM01118	CYTH_2	coord: 1..199 e-value: 2.9E-5 score: 33.5
IPR023577	CYTH domain	PFAM	PF01928	CYTH	coord: 2..181 e-value: 1.8E-20 score: 73.6
IPR023577	CYTH domain	PROSITE	PS51707	CYTH	coord: 1..199 score: 14.825
None	No IPR available	GENE3D	2.40.320.10		coord: 1..201 e-value: 2.4E-60 score: 206.0
None	No IPR available	PANTHER	PTHR34948	FAMILY NOT NAMED	coord: 1..201
None	No IPR available	CDD	cd07374	CYTH-like_Pase	coord: 2..175 e-value: 1.05743E-18 score: 77.4935
IPR033245	Triphosphate tunnel metalloenzyme 3	PANTHER	PTHR34948:SF3		coord: 1..201
IPR033469	CYTH-like domain superfamily	SUPERFAMILY	55154	CYTH-like phosphatases	coord: 1..188

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Cr_LG_7:26961787..26962806+
coding sequence from alignment at Cr_LG_7:26961787..26962806+

mRNA sequence

>Cr_19561.1_PI489777_v1 ID=Cr_19561.1_PI489777_v1; Name=Cr_19561.1; organism=Cicer reticulatum; type=mRNA; length=1020bp
AAATGCATAACGAATCGTAGGGTTGAGACTTGAAGGGGATCCATCCTCTT
TGCGTGTTTCTTTTCTCCAAACCCTCAAAATGCTAAGAAGAAAGCCAACC
AAAATCGAAGTCAAAATCGAAGACAAAGAAGAACTTGAAGAAGCTCGCCG
TCGTAACGCCTCCGCTGCAAACACCACCACAACTGGCGCCGCTTCTCTCC
TCCGTCAATTCGATCGCGCTGAAGATCCTTCTTCCAAAGCGAATCGCATT
GGCCTCTCCTCCTAAAATATCTCCCATACGCTCCTTCTCTCAACCCCCTT
CCCCAATGGAAGTAGAAGTCAAGCTTCGTCTCGCAAACGCCGAATCTCAT
CGCCACGTCACCACCTTGCTCTCTCCCTTCCACGTCATCACCCATCGCCA
ACACAATCTCTTTTTCGACGGCGCCGCTTCCGAACTTTCATCCCGCCGTG
CCGTGCTTCGTCTCCGATTCTACAACGACGATGAACGTTGTGTTGTTTCG
TTAAAAGCAAAAGCGGTTCTTGTCGACGGTGTTAGTCGCGTAGAGGAAGA
TGAAGAGGATTTTGATCCGAAGGTTGGTCGTGATTGCGTTGCCGAACCGG
GGAAGTTAGGTTTTGTGGAGTCGAGGATTTTGAGGAGGGTGAAGGACGAA
TTTGGGGTGGTGGGTGAAAATGGATATGTGGGTTTGGGTGGTTTTAGGAA
TGTGAGGAGTGTGTTTGATTGGAAAGGTTTGAAATTGGAAGTGGATGAGA
CTGATTTTGGTTTTGGAACTTTGTATGAGATCGAGTGTGAGAGTGCTGAT
CCCGACGAAGCTAAACGCATCCTCGAGGAGTTTTTGAAGGAGAATGGAAT
TGATTATTCTTACTCAGTGGTTTCTAAATTCGCAATTTTTCGATCTGGGA
AATTGCCATAGTGAGTCAATTTTCTATTGCTTTTGAATTGAATTGAACTG
GTTTATAAGCTATGCTGCTGTAGTTTATAATTTAAGAATGTAAGATTTAC
TGTTTGTTGTTTTACACCTA

protein sequence of Cr_19561.1_PI489777_v1

>Cr_19561.1_PI489777_v1 ID=Cr_19561.1_PI489777_v1; Name=Cr_19561.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=201bp
MEVEVKLRLANAESHRHVTTLLSPFHVITHRQHNLFFDGAASELSSRRAV
LRLRFYNDDERCVVSLKAKAVLVDGVSRVEEDEEDFDPKVGRDCVAEPGK
LGFVESRILRRVKDEFGVVGENGYVGLGGFRNVRSVFDWKGLKLEVDETD
FGFGTLYEIECESADPDEAKRILEEFLKENGIDYSYSVVSKFAIFRSGKL
P

mRNA from alignment at Cr_LG_7:26961787..26962806+

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cr_19561.1_PI489777_v1 ID=Cr_19561.1_PI489777_v1; Name=Cr_19561.1; organism=Cicer reticulatum; type=mRNA; length=1020bp; location=Sequence derived from: Cr_LG_7:26961787..26962806+ (Cicer reticulatum
AAATGCATAACGAATCGTAGGGTTGAGACTTGAAGGGGATCCATCCTCTT
TGCGTGTTTCTTTTCTCCAAACCCTCAAAATGCTAAGAAGAAAGCCAACC
AAAATCGAAGTCAAAATCGAAGACAAAGAAGAACTTGAAGAAGCTCGCCG
TCGTAACGCCTCCGCTGCAAACACCACCACAACTGGCGCCGCTTCTCTCC
TCCGTCAATTCGATCGCGCTGAAGATCCTTCTTCCAAAGCGAATCGCATT
GGCCTCTCCTCCTAAAATATCTCCCATACGCTCCTTCTCTCAACCCCCTT
CCCCAATGGAAGTAGAAGTCAAGCTTCGTCTCGCAAACGCCGAATCTCAT
CGCCACGTCACCACCTTGCTCTCTCCCTTCCACGTCATCACCCATCGCCA
ACACAATCTCTTTTTCGACGGCGCCGCTTCCGAACTTTCATCCCGCCGTG
CCGTGCTTCGTCTCCGATTCTACAACGACGATGAACGTTGTGTTGTTTCG
TTAAAAGCAAAAGCGGTTCTTGTCGACGGTGTTAGTCGCGTAGAGGAAGA
TGAAGAGGATTTTGATCCGAAGGTTGGTCGTGATTGCGTTGCCGAACCGG
GGAAGTTAGGTTTTGTGGAGTCGAGGATTTTGAGGAGGGTGAAGGACGAA
TTTGGGGTGGTGGGTGAAAATGGATATGTGGGTTTGGGTGGTTTTAGGAA
TGTGAGGAGTGTGTTTGATTGGAAAGGTTTGAAATTGGAAGTGGATGAGA
CTGATTTTGGTTTTGGAACTTTGTATGAGATCGAGTGTGAGAGTGCTGAT
CCCGACGAAGCTAAACGCATCCTCGAGGAGTTTTTGAAGGAGAATGGAAT
TGATTATTCTTACTCAGTGGTTTCTAAATTCGCAATTTTTCGATCTGGGA
AATTGCCATAGTGAGTCAATTTTCTATTGCTTTTGAATTGAATTGAACTG
GTTTATAAGCTATGCTGCTGTAGTTTATAATTTAAGAATGTAAGATTTAC
TGTTTGTTGTTTTACACCTA

Coding sequence (CDS) from alignment at Cr_LG_7:26961787..26962806+

>Cr_19561.1_PI489777_v1 ID=Cr_19561.1_PI489777_v1; Name=Cr_19561.1; organism=Cicer reticulatum; type=CDS; length=606bp; location=Sequence derived from: Cr_LG_7:26961787..26962806+ (Cicer reticulatum
ATGGAAGTAGAAGTCAAGCTTCGTCTCGCAAACGCCGAATCTCATCGCCA
CGTCACCACCTTGCTCTCTCCCTTCCACGTCATCACCCATCGCCAACACA
ATCTCTTTTTCGACGGCGCCGCTTCCGAACTTTCATCCCGCCGTGCCGTG
CTTCGTCTCCGATTCTACAACGACGATGAACGTTGTGTTGTTTCGTTAAA
AGCAAAAGCGGTTCTTGTCGACGGTGTTAGTCGCGTAGAGGAAGATGAAG
AGGATTTTGATCCGAAGGTTGGTCGTGATTGCGTTGCCGAACCGGGGAAG
TTAGGTTTTGTGGAGTCGAGGATTTTGAGGAGGGTGAAGGACGAATTTGG
GGTGGTGGGTGAAAATGGATATGTGGGTTTGGGTGGTTTTAGGAATGTGA
GGAGTGTGTTTGATTGGAAAGGTTTGAAATTGGAAGTGGATGAGACTGAT
TTTGGTTTTGGAACTTTGTATGAGATCGAGTGTGAGAGTGCTGATCCCGA
CGAAGCTAAACGCATCCTCGAGGAGTTTTTGAAGGAGAATGGAATTGATT
ATTCTTACTCAGTGGTTTCTAAATTCGCAATTTTTCGATCTGGGAAATTG
CCATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR023577	CYTH_domain
IPR033245	TTM3
IPR033469	CYTH-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0050355	inorganic triphosphate phosphatase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0048364	root development

Search form

Cr_19561.1, Cr_19561.1_PI489777_v1 (mRNA) Cicer reticulatum