Cr_19561.1, Cr_19561.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview
NameCr_19561.1
Unique NameCr_19561.1_PI489777_v1
TypemRNA
OrganismCicer reticulatum (wild chickpea)
Sequence length1020
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Cr_LG_7supercontigCr_LG_7:26961787..26962806 +Cicer reticulatum L. PI489777 genome v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer reticulatum L. PI489777 genome v12016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot2019-05-21
InterProScan: C. reticulatum PI489777 genome v12019-05-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
crpsR712Pisum sativum Cameor genome v1aPisum sativum
crpsR714Pisum sativum Cameor genome v1aPisum sativum
crpsR728Pisum sativum Cameor genome v1aPisum sativum
crvuR795Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR856Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuR857Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crpvR838Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR903Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crpvR904Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cccrL0427Cajanus cajan Asha genome v1.0Cajanus cajan
cccrL0756Cajanus cajan Asha genome v1.0Cajanus cajan
ancrL0058Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0294Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0415Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancrL0487Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascrL098Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL676Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascrL679Vigna angularis Jingnong 6 genome v1.1Vigna angularis
crzwsR695Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR749Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crzwsR781Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
crtifR744Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR755Vicia faba cv. Tiffany genome v1.0Vicia faba
crtifR757Vicia faba cv. Tiffany genome v1.0Vicia faba
crvfhR759Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR768Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvfhR771Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
crvrvR719Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR723Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvrvR730Vigna radiata cv. VC1973A genome v6.0Vigna radiata
crvssR843Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvssR853Vicia sativa cv. Studenica genome v1.0Vicia sativa
crvuaR790Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR833Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
crvuaR834Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cancrL820Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg19610.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun03g363500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_13355Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004508360.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_26224Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_003600Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.003G172100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat4g035080.1Pisum sativum Cameor genome v1aPisum sativum
LR48_mrnaVigan01g252100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.4g181600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.4g137320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014653696.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat04G0121500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cr_19561Cr_19561_PI489777_v1Cicer reticulatumgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19561.1:utr5p1Cr_19561.1:utr5p1_PI489777_v1Cicer reticulatumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19561.1:exon1Cr_19561.1:exon1_PI489777_v1Cicer reticulatumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19561.1:cds1Cr_19561.1:cds1_PI489777_v1Cicer reticulatumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cr_19561.1:utr3p1Cr_19561.1:utr3p1_PI489777_v1Cicer reticulatumthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cr_19561.1_PI489777_v1Cr_19561.1_PI489777_v1Cicer reticulatumpolypeptide


Homology
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BLAST of Cr_19561.1 vs. DB:Swiss
Match: TTM3_ARATH (Triphosphate tunel metalloenzyme 3 OS=Arabidopsis thaliana OX=3702 GN=TTM3 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.657e-63
Identity = 113/210 (53.81%), Postives = 151/210 (71.90%), Query Frame = 1 
Query:    1 MEVEVKLRLANAESHRHVTTLLSPFHVITHRQHNLFFDGAASELSSRRAVLRLRFYND---------DERCVVSLKAKAVLVDGVSRVEEDEEDFDPKVGRDCVAEPGKLGFVESRILRRVKDEFGVVGENGYVGLGGFRNVRSVFDWKGLKLEVDETDFGFGTLYEIECESADPDEAKRILEEFLKENGIDYSYSVVSKFAIFRSGKLP 603
            MEVEVKLRL  A +H  +TTLL+P+H+ T  Q N FFD   ++LS RRAVLRLRF  +           RC+VSLKAK  L +G+SRVEEDEE+ +  +G++CV  P KL  + SR+L+RVK+E+G     G+V LGGF NVR+V++W+G+KLEVDET + FG  YEIECE+ +P+  K ++EEFL E  I++S S ++KFA+FRSGKLP
Sbjct:    1 MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210
The following BLAST results are available for this feature:
BLAST of Cr_19561.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
TTM3_ARATH4.657e-6353.81Triphosphate tunel metalloenzyme 3 OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023577CYTH domainSMARTSM01118CYTH_2coord: 1..199
e-value: 2.9E-5
score: 33.5
IPR023577CYTH domainPFAMPF01928CYTHcoord: 2..181
e-value: 1.8E-20
score: 73.6
IPR023577CYTH domainPROSITEPS51707CYTHcoord: 1..199
score: 14.825
NoneNo IPR availableGENE3D2.40.320.10coord: 1..201
e-value: 2.4E-60
score: 206.0
NoneNo IPR availablePANTHERPTHR34948FAMILY NOT NAMEDcoord: 1..201
NoneNo IPR availableCDDcd07374CYTH-like_Pasecoord: 2..175
e-value: 1.05743E-18
score: 77.4935
IPR033245Triphosphate tunnel metalloenzyme 3PANTHERPTHR34948:SF3coord: 1..201
IPR033469CYTH-like domain superfamilySUPERFAMILY55154CYTH-like phosphatasescoord: 1..188

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cr_19561.1_PI489777_v1 ID=Cr_19561.1_PI489777_v1; Name=Cr_19561.1; organism=Cicer reticulatum; type=mRNA; length=1020bp
AAATGCATAACGAATCGTAGGGTTGAGACTTGAAGGGGATCCATCCTCTT
TGCGTGTTTCTTTTCTCCAAACCCTCAAAATGCTAAGAAGAAAGCCAACC
AAAATCGAAGTCAAAATCGAAGACAAAGAAGAACTTGAAGAAGCTCGCCG
TCGTAACGCCTCCGCTGCAAACACCACCACAACTGGCGCCGCTTCTCTCC
TCCGTCAATTCGATCGCGCTGAAGATCCTTCTTCCAAAGCGAATCGCATT
GGCCTCTCCTCCTAAAATATCTCCCATACGCTCCTTCTCTCAACCCCCTT
CCCCAATGGAAGTAGAAGTCAAGCTTCGTCTCGCAAACGCCGAATCTCAT
CGCCACGTCACCACCTTGCTCTCTCCCTTCCACGTCATCACCCATCGCCA
ACACAATCTCTTTTTCGACGGCGCCGCTTCCGAACTTTCATCCCGCCGTG
CCGTGCTTCGTCTCCGATTCTACAACGACGATGAACGTTGTGTTGTTTCG
TTAAAAGCAAAAGCGGTTCTTGTCGACGGTGTTAGTCGCGTAGAGGAAGA
TGAAGAGGATTTTGATCCGAAGGTTGGTCGTGATTGCGTTGCCGAACCGG
GGAAGTTAGGTTTTGTGGAGTCGAGGATTTTGAGGAGGGTGAAGGACGAA
TTTGGGGTGGTGGGTGAAAATGGATATGTGGGTTTGGGTGGTTTTAGGAA
TGTGAGGAGTGTGTTTGATTGGAAAGGTTTGAAATTGGAAGTGGATGAGA
CTGATTTTGGTTTTGGAACTTTGTATGAGATCGAGTGTGAGAGTGCTGAT
CCCGACGAAGCTAAACGCATCCTCGAGGAGTTTTTGAAGGAGAATGGAAT
TGATTATTCTTACTCAGTGGTTTCTAAATTCGCAATTTTTCGATCTGGGA
AATTGCCATAGTGAGTCAATTTTCTATTGCTTTTGAATTGAATTGAACTG
GTTTATAAGCTATGCTGCTGTAGTTTATAATTTAAGAATGTAAGATTTAC
TGTTTGTTGTTTTACACCTA
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protein sequence of Cr_19561.1_PI489777_v1

>Cr_19561.1_PI489777_v1 ID=Cr_19561.1_PI489777_v1; Name=Cr_19561.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=201bp
MEVEVKLRLANAESHRHVTTLLSPFHVITHRQHNLFFDGAASELSSRRAV
LRLRFYNDDERCVVSLKAKAVLVDGVSRVEEDEEDFDPKVGRDCVAEPGK
LGFVESRILRRVKDEFGVVGENGYVGLGGFRNVRSVFDWKGLKLEVDETD
FGFGTLYEIECESADPDEAKRILEEFLKENGIDYSYSVVSKFAIFRSGKL
P
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mRNA from alignment at Cr_LG_7:26961787..26962806+

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cr_19561.1_PI489777_v1 ID=Cr_19561.1_PI489777_v1; Name=Cr_19561.1; organism=Cicer reticulatum; type=mRNA; length=1020bp; location=Sequence derived from: Cr_LG_7:26961787..26962806+ (Cicer reticulatum
AAATGCATAACGAATCGTAGGGTTGAGACTTGAAGGGGATCCATCCTCTT
TGCGTGTTTCTTTTCTCCAAACCCTCAAAATGCTAAGAAGAAAGCCAACC
AAAATCGAAGTCAAAATCGAAGACAAAGAAGAACTTGAAGAAGCTCGCCG
TCGTAACGCCTCCGCTGCAAACACCACCACAACTGGCGCCGCTTCTCTCC
TCCGTCAATTCGATCGCGCTGAAGATCCTTCTTCCAAAGCGAATCGCATT
GGCCTCTCCTCCTAAAATATCTCCCATACGCTCCTTCTCTCAACCCCCTT
CCCCAATGGAAGTAGAAGTCAAGCTTCGTCTCGCAAACGCCGAATCTCAT
CGCCACGTCACCACCTTGCTCTCTCCCTTCCACGTCATCACCCATCGCCA
ACACAATCTCTTTTTCGACGGCGCCGCTTCCGAACTTTCATCCCGCCGTG
CCGTGCTTCGTCTCCGATTCTACAACGACGATGAACGTTGTGTTGTTTCG
TTAAAAGCAAAAGCGGTTCTTGTCGACGGTGTTAGTCGCGTAGAGGAAGA
TGAAGAGGATTTTGATCCGAAGGTTGGTCGTGATTGCGTTGCCGAACCGG
GGAAGTTAGGTTTTGTGGAGTCGAGGATTTTGAGGAGGGTGAAGGACGAA
TTTGGGGTGGTGGGTGAAAATGGATATGTGGGTTTGGGTGGTTTTAGGAA
TGTGAGGAGTGTGTTTGATTGGAAAGGTTTGAAATTGGAAGTGGATGAGA
CTGATTTTGGTTTTGGAACTTTGTATGAGATCGAGTGTGAGAGTGCTGAT
CCCGACGAAGCTAAACGCATCCTCGAGGAGTTTTTGAAGGAGAATGGAAT
TGATTATTCTTACTCAGTGGTTTCTAAATTCGCAATTTTTCGATCTGGGA
AATTGCCATAGTGAGTCAATTTTCTATTGCTTTTGAATTGAATTGAACTG
GTTTATAAGCTATGCTGCTGTAGTTTATAATTTAAGAATGTAAGATTTAC
TGTTTGTTGTTTTACACCTA
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Coding sequence (CDS) from alignment at Cr_LG_7:26961787..26962806+

>Cr_19561.1_PI489777_v1 ID=Cr_19561.1_PI489777_v1; Name=Cr_19561.1; organism=Cicer reticulatum; type=CDS; length=606bp; location=Sequence derived from: Cr_LG_7:26961787..26962806+ (Cicer reticulatum
ATGGAAGTAGAAGTCAAGCTTCGTCTCGCAAACGCCGAATCTCATCGCCA
CGTCACCACCTTGCTCTCTCCCTTCCACGTCATCACCCATCGCCAACACA
ATCTCTTTTTCGACGGCGCCGCTTCCGAACTTTCATCCCGCCGTGCCGTG
CTTCGTCTCCGATTCTACAACGACGATGAACGTTGTGTTGTTTCGTTAAA
AGCAAAAGCGGTTCTTGTCGACGGTGTTAGTCGCGTAGAGGAAGATGAAG
AGGATTTTGATCCGAAGGTTGGTCGTGATTGCGTTGCCGAACCGGGGAAG
TTAGGTTTTGTGGAGTCGAGGATTTTGAGGAGGGTGAAGGACGAATTTGG
GGTGGTGGGTGAAAATGGATATGTGGGTTTGGGTGGTTTTAGGAATGTGA
GGAGTGTGTTTGATTGGAAAGGTTTGAAATTGGAAGTGGATGAGACTGAT
TTTGGTTTTGGAACTTTGTATGAGATCGAGTGTGAGAGTGCTGATCCCGA
CGAAGCTAAACGCATCCTCGAGGAGTTTTTGAAGGAGAATGGAATTGATT
ATTCTTACTCAGTGGTTTCTAAATTCGCAATTTTTCGATCTGGGAAATTG
CCATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR023577CYTH_domain
IPR033245TTM3
IPR033469CYTH-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0050355inorganic triphosphate phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0048364root development