Psat3g013560.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat3g013560.1 vs. DB:Swiss
Match: CB60G_ARATH (Calmodulin-binding protein 60 G OS=Arabidopsis thaliana OX=3702 GN=CBP60G PE=1 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 5.473e-77 Identity = 159/422 (37.68%), Postives = 230/422 (54.50%), Query Frame = 1
Query: 136 MESFFRRVVRDEVKRKLQEHL----FSREKINEGGKSGARSLELCFINNNKLPDTTFTKTNVIPKD-EPLQVALFDVRSKSIVNEGPFSSMKIEICPIQGEFESCEDDDWSETEFNDNILHERENKEPLLVGDRVVTLKNGVGSIS-KIMFNDNSGWVRNKKFRLGAKAMRNGENIKEGRSQAFRVKDIRGESYKKHYPPLLMDDVWRLEKIAENGKFRERLNSNGIYTVKDLLRLLVINESSLHEKFGK-IQKKCWSAIIEHARSCVLDEYMLYSYEIIGEPIMLLFNVIYELVGVTFDKQKFYLPDDLTISTPSQKNWVEIVKQDAYKNIENLKAIDEGLLNCISLEARIKSTQEQDLQHIDISAANVNDDGMQNVEI--NVDPVADIRGIPENSYGHSTYTISEPDYDVSFDNFDEAEF 1374
ME+ RR+VR+E++R LQ L S E+ S L+LCFIN+ P + FT + + +D PL + L D + ++V+ GPFSS ++E+ P+ +F ++ W+ FN NIL +RE K PLL GD V LKNGVG I+ I F+DNS W R++KFRLGAK G+ E RS+AF +D RGESYKKH+PP D+VWRLEKIA++G RL I TVKD RL +N + LH G + KK W+ I+ HA CVLDE Y Y + LLFN +YEL+ V+F+ D + P ++ +K +AY+N+ + A+++ ++ LQ V G Q+++ ++DP + + + S+ T+ PD +SFDN A F
Sbjct: 45 MENMIRRIVREEIQRSLQPFLSSSCVSMERSRSETPSSRSRLKLCFINSP--PSSIFTGSKIEAEDGSPLVIELVDATTNTLVSTGPFSSSRVELVPLNADFT---EESWTVEGFNRNILTQREGKRPLLTGDLTVMLKNGVGVITGDIAFSDNSSWTRSRKFRLGAKL--TGDGAVEARSEAFGCRDQRGESYKKHHPPCPSDEVWRLEKIAKDGVSATRLAERKILTVKDFRRLYTVNRNELHNIIGAGVSKKTWNTIVSHAMDCVLDETECYIYNANTPGVTLLFNSVYELIRVSFNGN-----DIQNLDQP----ILDQLKAEAYQNLNRITAVNDRTF---------VGHPQRSLQCPQDPGFVVTCSGSQHIDFQGSLDPSSSSMAL---CHKASSSTV-HPDVLMSFDNSSTARF 437
BLAST of Psat3g013560.1 vs. DB:Swiss
Match: CB60D_ARATH (Calmodulin-binding protein 60 D OS=Arabidopsis thaliana OX=3702 GN=CBP60D PE=2 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 1.185e-66 Identity = 140/355 (39.44%), Postives = 207/355 (58.31%), Query Frame = 1
Query: 130 SLMESFFRRVVRDEVKRKLQE---------HLFSREKINEGGKSGARSLELCFINNNKLPDTTFTKTNV-IPKDEPLQVALFDVRSKSIVNEGPFSSMKIEICPIQGEFESCEDDDWSETEFNDNILHERENKEPLLVGDRVVTLKNGVGSISKIMFNDNSGWVRNKKFRLGAKAMR---NGENIKEGRSQAFRVKDIRGESYKKHYPPLLMDDVWRLEKIAENGKFRERLNSNGIYTVKDLLRLLVINESSLHEKFGK-IQKKCWSAIIEHARSCVLDEYMLYSYEIIGEPIMLLFNVIYELVGVTFDKQKFYLPDDLTISTPSQKNWVEIVKQDAYKNIENLKAID-EGLLNC 1149
S +E RRVV +EV+R L + +FS ++I GG G R+L+L F + LP FT V + + V L D + V GP +S+K+E+ + G+F + +D+DW++ EF +++ ERE K PLL GD V LK GVG++ +I+F DNS W+R++KFRLG + +G I+E +++AF VKD RGE YKKHYPP L D+VWRLEKI ++G F +RL + GI TV+ LR LV + + L G + K W ++EHA++CVL + Y + ++FN IYEL G+ + Q YL D + SQK +V+ + + AY+N + + E LLN
Sbjct: 38 SSLEPILRRVVSEEVERALAKLVPTRLTTSSVFSPKRI--GGPDG-RNLQLHFKSRLSLP--LFTGGRVEGEQGATIHVVLIDANTGRPVTVGPEASLKLEVVVLGGDFNNEDDEDWTQEEFESHVVKEREGKRPLLTGDLFVVLKEGVGTLGEIVFTDNSSWIRSRKFRLGLRVPSGYCDGIRIREAKTEAFSVKDHRGELYKKHYPPALNDEVWRLEKIGKDGAFHKRLTAAGIVTVEGFLRQLVRDSTKLRAILGSGMSNKMWDLLVEHAKTCVLSGKLYIYYTEDSRSVGVVFNNIYELSGLITEDQ--YLSADSL--SESQKVYVDGLVKKAYENWNQVVEYEGESLLNL 383
BLAST of Psat3g013560.1 vs. DB:Swiss
Match: CB60C_ARATH (Calmodulin-binding protein 60 C OS=Arabidopsis thaliana OX=3702 GN=CBP60C PE=2 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 3.532e-66 Identity = 132/342 (38.60%), Postives = 199/342 (58.19%), Query Frame = 1
Query: 130 SLMESFFRRVVRDEVKRKLQE----HLFSREKINEGGKSGARSLELCFINNNKLPDTTFTKTNVIPKDEPLQVALFDVRSKSIVNEGPFSSMKIEICPIQGEFESCEDDDWSETEFNDNILHERENKEPLLVGDRVVTLKNGVGSISKIMFNDNSGWVRNKKFRLGAKAMRN---GENIKEGRSQAFRVKDIRGESYKKHYPPLLMDDVWRLEKIAENGKFRERLNSNGIYTVKDLLRLLVINESSLHEKFGK-IQKKCWSAIIEHARSCVLDEYMLYSYEIIGEPIMLLFNVIYELVGVTFDKQKFYLPDDLTISTPSQKNWVEIVKQDAYKNIENLKAID 1131
S +E RRVV +EV+R L + L R G R+L+L F + +P T K + + V L D+ + ++ GP +S K+++ + G+F + +DD WS EF +++ ER+ K PLL GD VTLK GVG++ +++F DNS W+R +KFRLG + G ++E +++AF VKD RGE YKKHYPP L D+VWRLEKI ++G F ++LN GIY VK+ LRL+V + L G + + W + EH+++CVL E MLY Y + + ++FN IYE G+ KQ +Y D L + +QK +V+ + + AY+N E + D
Sbjct: 55 SSLEPILRRVVSEEVERALAKLGPARLSERSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEG-EQGAAIHVVLLDMTTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEEFEGHLVKERQGKRPLLTGDVQVTLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCEGMRVREAKTEAFTVKDHRGELYKKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQKLRTILGSGMSNRMWETLAEHSKTCVLSE-MLYVY-YPEDSVGVVFNNIYEFSGLISGKQ-YYPADSL---SDNQKGYVDGLVRKAYENWEQVIEYD 389
BLAST of Psat3g013560.1 vs. DB:Swiss
Match: CB60B_ARATH (Calmodulin-binding protein 60 B OS=Arabidopsis thaliana OX=3702 GN=CBP60B PE=2 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 2.198e-64 Identity = 130/337 (38.58%), Postives = 197/337 (58.46%), Query Frame = 1
Query: 130 SLMESFFRRVVRDEVKRKLQEHLFSREKINEG-------GKSGARSLELCFINNNKLPDTTFTKTNVIPKDEPLQVALFDVRSKSIVNEGPFSSMKIEICPIQGEFESCEDDDWSETEFNDNILHERENKEPLLVGDRVVTLKNGVGSISKIMFNDNSGWVRNKKFRLGAKAMR---NGENIKEGRSQAFRVKDIRGESYKKHYPPLLMDDVWRLEKIAENGKFRERLNSNGIYTVKDLLRLLVINESSLHEKFGK-IQKKCWSAIIEHARSCVLDEYMLYSYEIIGEPIMLLFNVIYELVGVTFDKQKFYLPDDLTISTPSQKNWVEIVKQDAYKN 1107
S +E RRVV +E++R L + +R + G G G R L+L F + LP T K + + V L D + V GP +S K+ I ++G+F + +D+DW++ EF +++ ER K PLL G+ VTLK GVG++ +++F DNS W+R++KFRLG + + +G I+E +++AF VKD RGE YKKHYPP L DDVWRL+KI ++G F ++L + GI TV+D LR++V + L G + K W A++EHA++CV + Y + ++FN IYEL G+ Q ++ D L T SQK +VE + + AY+N
Sbjct: 49 SSLEPILRRVVSEELERALAKLGPARLTGSSGSSPKRIEGPDG-RKLQLHFKSRLSLPLFTGGKVEG-EQGAVIHVVLIDANTGRAVVYGPEASAKLHIVVLEGDFNTEDDEDWTQEEFESHVVKERSGKRPLLTGEVYVTLKEGVGTLGELVFTDNSSWIRSRKFRLGLRVVSGCCDGMRIREAKTEAFVVKDHRGELYKKHYPPALNDDVWRLDKIGKDGAFHKKLTAEGINTVEDFLRVMVKDSPKLRTILGSGMSNKMWDALVEHAKTCVQSSKLYIYYAEDSRNVGVVFNNIYELSGLISGDQ-YFSADSL---TDSQKVYVEGLVKKAYEN 379
BLAST of Psat3g013560.1 vs. DB:Swiss
Match: CB60A_ARATH (Calmodulin-binding protein 60 A OS=Arabidopsis thaliana OX=3702 GN=CBP60A PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 2.954e-60 Identity = 132/378 (34.92%), Postives = 213/378 (56.35%), Query Frame = 1
Query: 25 RIPSHGSKGNLGVTKQASNSGLKKMMNTLRMHGHDSLMESFFRRVVRDEVKRKLQEHLFSREKI--NEGGKSGARSLELCFINNNKLPDTTFTKTNVIPKDE--PLQVALFDVRSKSIVNEGPFSSMKIEICPIQGEFESCEDDDWSETEFNDNILHERENKEPLLVGDRVVTLKNGVGSISKIMFNDNSGWVRNKKFRLGAKAMRNGE--NIKEGRSQAFRVKDIRGESYKKHYPPLLMDDVWRLEKIAENGKFRERLNSNGIYTVKDLLRLLVINESSLHEKFGK-IQKKCWSAIIEHARSCVLDEYM-LYSYEIIGEPIMLLFNVIYELVGVTFDKQKFYLPDDLTISTPSQKNWVEIVKQDAYKNIENLKAIDE 1134
RIP++ V ++ + T++ H + ++E R+VV++EV+ L +HL + I E +R+L+L F+NN LP FT I DE ++V L D + I + GP SS K+E+ ++G+F S D W++ + +NI+ ERE K+PLL G+ L +G+G + +I F DNS W R++KFRLG + + + I+E +++F V+D RGE YKKH+PP L D+VWRLEKI ++G F RLN + I TVKD L +N S L + G + K W ++HARSCVLD + +Y + ++FNV+ +++G+ D Q Y+P + + +K E++ DA ++ + + D+
Sbjct: 2 RIPTYDFGSKFSVVQEVMR------LQTVK-HFLEPVLEPLIRKVVKEEVELALGKHLAGIKWICEKETHPLESRNLQLKFLNNLSLP--VFTSAR-IEGDEGQAIRVGLIDPSTGQIFSSGPASSAKLEVFVVEGDFNSVSD--WTDEDIRNNIVREREGKKPLLNGNVFAVLNDGIGVMDEISFTDNSSWTRSRKFRLGVRIVDQFDYVKIREAITESFVVRDHRGELYKKHHPPSLFDEVWRLEKIGKDGAFHRRLNLSNINTVKDFLTHFHLNSSKLRQVLGTGMSSKMWEITLDHARSCVLDSSVHVYQAPGFQKKTAVVFNVVAQVLGLLVDFQ--YIPAEKL--SEIEKAQAEVMVIDALSHLNEVISYDD 363
BLAST of Psat3g013560.1 vs. DB:Swiss
Match: CB60F_ARATH (Calmodulin-binding protein 60 F OS=Arabidopsis thaliana OX=3702 GN=CBP60F PE=2 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 5.166e-57 Identity = 126/360 (35.00%), Postives = 194/360 (53.89%), Query Frame = 1
Query: 130 SLMESFFRRVVRDEVKRKLQ--EHLFSREKINEGGK---SGARSLELCFINNNKLPDTTFTKTNV-IPKDEPLQVALFDVRSKSIVNEGPFSSMKIEICPIQGEFESCEDDDWSETEFNDNILHERENKEPLLVGDRVVTLKNGVGSISKIMFNDNSGWVRNKKFRLGAKAMRNGENIKEGRSQAFRVKDIRGESYKKHYPPLLMDDVWRLEKIAENGKFRERLNSNGIYTVKDLLRLLVINESSLHEKFGK-IQKKCWSAIIEHARSCVLDEYMLYSYEIIGEPIMLLFNVIYELVGVTFDKQKFYLPDDLTISTPSQKNWVEIVKQDAYKNIENLKAIDEGLLNCISLEAR-IKSTQE 1185
S +E FRR+V +EV+R + E+ S + E K R+L+L F ++P FT V + + V L D + +++ G S K+ I + G+F +D DW+ F + ERE K P+L GDR V +K GVG++ K+ F DNS W+R++KFRLG K G +I+E +++ F VKD RGE YKKHYPP+L D+VWRL+KIA++G ++L + I TV+D L++L+ + L G + + W +EHA++CVL + Y ++FN IYE G+ + F + L QK + + + AY+N + LLNC+ + + IKS E
Sbjct: 49 SSLEPLFRRIVSEEVERAISRLENSKSTSRSTEPNKIQGLDGRNLQLRF--RTRMPPHLFTGGKVEGEQGSAIHVVLIDANTGNVIQTGEESMTKLNIVVLDGDFNDEDDKDWTREHFESFEVKEREGKRPILTGDRHVIIKEGVGTLGKLTFTDNSSWIRSRKFRLGVKPA-TGFHIREAKTEPFAVKDHRGELYKKHYPPVLHDEVWRLDKIAKDGALHKKLLKSNIVTVEDFLQILMKDPQKLRSLLGSGMSNRMWDNTVEHAKTCVLGGKLYAYYTDQTHQTAVVFNHIYEFQGLIANGH-FLSSESL---NHDQKISADTLVKTAYENWHKVVEYGGKLLNCLPVAKKGIKSLPE 401
BLAST of Psat3g013560.1 vs. DB:Swiss
Match: CB60E_ARATH (Calmodulin-binding protein 60 E OS=Arabidopsis thaliana OX=3702 GN=CBP60E PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.463e-56 Identity = 130/369 (35.23%), Postives = 198/369 (53.66%), Query Frame = 1
Query: 130 SLMESFFRRVVRDEVKRKLQE----HLFSR----EKINEGGKSGARSLELCFINNNKLPDTTFTKTNV-IPKDEPLQVALFDVRSKSIVNEGPFSSMKIEICPIQGEFESCEDDDWSETEFNDNILHERENKEPLLVGDRVVTLKNGVGSISKIMFNDNSGWVRNKKFRLGAK-AMRNGEN--IKEGRSQAFRVKDIRGESYKKHYPPLLMDDVWRLEKIAENGKFRERLNSNGIYTVKDLLRLLVINESSLHEKFGK-IQKKCWSAIIEHARSCVLDEYMLYSYEIIGEPIMLLFNVIYELVGVTFDKQKFYLPDDLTISTPSQKNWVEIVKQDAYKNIENLKAIDEGLLNCISL-EARIKSTQEQDL 1194
S +E FRR+V +EV+R L L SR ++I + R+L+L F ++P FT V + + V L D + ++V G S+ K+ + ++G+F +D+DW+ F + ERE K P+L GD + LK GVG++ ++ F DNS W+R++KFRLG K A G++ I+E +++ F VKD RGE YKKHYPP + D+VWRL++IA++G ++L I TV+D LRLLV + L G + + W +EHA++CVL + Y ++FN IYE G+ + Q L QK +I+ + AY+N D LLNC+ + E IKS E +
Sbjct: 45 SSLEPLFRRIVSEEVERALSRLGNAKLTSRSPEPKRIQD---RNGRNLQLHF--RTRMPPHLFTGGKVEGERGSAIHVVLIDANTGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKEREGKRPILTGDTQIVLKEGVGTLGELTFTDNSSWIRSRKFRLGVKPASGYGDSFCIREAKTEPFAVKDHRGELYKKHYPPAVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSNRMWENTVEHAKTCVLGGKLYVFYTDQTHATGVVFNHIYEFRGLITNGQFL----SLESLNHDQKISADILVKLAYENWHKAIEYDGKLLNCLPVAEKEIKSLLEPKM 404
BLAST of Psat3g013560.1 vs. DB:Swiss
Match: SARD1_ARATH (Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana OX=3702 GN=SARD1 PE=1 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 1.666e-52 Identity = 121/341 (35.48%), Postives = 189/341 (55.43%), Query Frame = 1
Query: 103 NTLRMHGHDSLMESFFRRVVRDEVKRKLQEHL-FSREKIN--EGGKSGARSLELCFINNNKLPDTTFTKTNVIPKDEPLQVALFDVRSKSIVNEGPFSSMKIEICPIQGEFESCEDDDWSETEFNDNILHERENKEPLLVGDRVVTLKNGVGSISKIMFNDNSGWVRNKKFRLGAKAMR----NGENIKEGRSQAFRVKDIRGESYKKHYPPLLMDDVWRLEKIAENGKFRERLNSNGIYTVKDLLRLLVINESSLHEKFGK-IQKKCWSAIIEHARSCVLDEYMLYSYEIIGEPIMLLFNVIYELVGVTFDKQKFYLPDDLTISTPSQKNWVEIVKQDAY 1101
NTLR S++E R+VVR EV+ + + SR E ++ +L+L F N P T +K + + + PL++ L D +K + P +K++I + G+F S D W+ EF NI+ ER+ K PLL G+ VT++NGV +I +I+F DNS W+R++KFR+GAK + G + E ++A V+D RGE YKKH+PP+L D+VWRLEKI ++G F ++L+S I TV+D L+L V++ L + G + + W ++HAR C+L + S G ++ N I E++ D L +++ P KN V +DAY
Sbjct: 44 NTLR-----SVLEPVIRKVVRQEVEYGISKRFRLSRSSSFRIEAPEATTPTLKLIFRKNLMTPIFTGSKISDV-DNNPLEIILVDDSNKPVNLNRP---IKLDIVALHGDFPS--GDKWTSDEFESNIIKERDGKRPLLAGEVSVTVRNGVATIGEIVFTDNSSWIRSRKFRIGAKVAKGSSGQGVVVCEAMTEAIVVRDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSSRHINTVQDFLKLSVVDVDELRQILGPGMSDRKWEVTLKHARECILGNKLYISR---GPNFFMILNPICEVMKALIDGH--VLSSQESLNQPYVKNLV----RDAY 364 The following BLAST results are available for this feature:
BLAST of Psat3g013560.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 8
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat3g013560.1_Ps_Cameor_v1a ID=Psat3g013560.1_Ps_Cameor_v1a; Name=Psat3g013560.1; organism=Pisum sativum; type=mRNA; length=2682bpback to top protein sequence of Psat3g013560.1_Ps_Cameor_v1a >Psat3g013560.1_Ps_Cameor_v1a ID=Psat3g013560.1_Ps_Cameor_v1a; Name=Psat3g013560.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=519bpback to top mRNA from alignment at chr3LG5:31074188..31076869- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat3g013560.1_Ps_Cameor_v1a ID=Psat3g013560.1_Ps_Cameor_v1a; Name=Psat3g013560.1; organism=Pisum sativum; type=mRNA; length=2682bp; location=Sequence derived from: chr3LG5:31074188..31076869- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr3LG5:31074188..31076869- >Psat3g013560.1_Ps_Cameor_v1a ID=Psat3g013560.1_Ps_Cameor_v1a; Name=Psat3g013560.1; organism=Pisum sativum; type=CDS; length=3114bp; location=Sequence derived from: chr3LG5:31074188..31076869- (Pisum sativumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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