Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Psat4g002840.1 Psat4g002840.1_Ps_Cameor_v1a-protein Pisum sativum polypeptide
Psat4g002840.1_Ps_Cameor_v1a Psat4g002840.1_Ps_Cameor_v1a Pisum sativum polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat4g002840.1.five_prime_utr1 Psat4g002840.1.five_prime_utr1_Ps_Cameor_v1a Pisum sativum five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat4g002840.1.cds1 Psat4g002840.1.cds1_Ps_Cameor_v1a Pisum sativum CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat4g002840.1.exon1 Psat4g002840.1.exon1_Ps_Cameor_v1a Pisum sativum exon
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat4g002840.1.three_prime_utr1 Psat4g002840.1.three_prime_utr1_Ps_Cameor_v1a Pisum sativum three_prime_UTR
Homology
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)
HSP 1 Score: 185.267 bits (469), Expect = 6.996e-60
Identity = 89/126 (70.63%), Postives = 103/126 (81.75%), Query Frame = 1
Query: 1 MAESDDESGGQASGSKELL--QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFSMNMIAGKE 372
MA+SD++SGG G Q+R LPIANV RIMKKALP+ AKISK+AKET+QECVSEFISFITGEAS+KCQ+EKRKTINGDDL+WAMTTLGFE+Y EPLKVYL KYRE+EG+K + KE
Sbjct: 1 MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKE 126
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYB8_ORYSJ (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)
HSP 1 Score: 176.407 bits (446), Expect = 1.073e-55
Identity = 87/127 (68.50%), Postives = 103/127 (81.10%), Query Frame = 1
Query: 1 MAESDDESGGQ---ASG--SKELLQERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFSMNMIAG 366
M +SD++SGG A G S Q+R LPIANV RIMKKALP+ AKISK+AKET+QECVSEFISFITGEAS+KCQ+EKRKTINGDDL+WAMTTLGFE+Y +PLK YL K+REIEG++ + AG
Sbjct: 1 MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAAASTTGAG 127
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYBA_ORYSJ (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)
HSP 1 Score: 176.022 bits (445), Expect = 1.828e-55
Identity = 82/116 (70.69%), Postives = 101/116 (87.07%), Query Frame = 1
Query: 1 MAESDDESGGQASG---SKELLQERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDK 339
M +SD+ESGG ++ + Q+R LPIANV RIMK+ALP+ AKISK+AKET+QECVSEFISFITGEAS+KCQ+EKRKTINGDDL+WAMTTLGFE+Y +PLK+YL K+RE+EG+K
Sbjct: 1 MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)
HSP 1 Score: 173.326 bits (438), Expect = 7.222e-55
Identity = 82/109 (75.23%), Postives = 94/109 (86.24%), Query Frame = 1
Query: 58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFSMNMIAGKEQQGG 384
Q+R LPIANV RIMKKALP+ AKISK+AKETMQECVSEFISF+TGEAS+KCQKEKRKTINGDDL+WAMTTLGFE+Y EPLKVYL ++REIEG++ G+ Q GG
Sbjct: 28 QDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG-----LGRPQTGG 131
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)
HSP 1 Score: 166.007 bits (419), Expect = 1.312e-52
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 1
Query: 25 GGQASGSKELLQERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFSMNMIAGKEQQGGNTD 393
GG++ GS Q+R LPIAN+ RIMKKALP KI K+AK+T+QECVSEFISFIT EAS+KCQKEKRKT+NGDDL+WAM TLGFE+Y EPLK+YL +YRE+EGD N +GK G N D
Sbjct: 12 GGESGGSVRE-QDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD-----NKGSGKSGDGSNRD 128
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)
HSP 1 Score: 167.548 bits (423), Expect = 3.075e-52
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 1
Query: 58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDK 339
Q+R LPIANVGRIMKK LP KISK+AKET+QECVSEFISF+TGEAS+KCQ+EKRKTINGDD++WA+TTLGFE+Y PLKVYL KYR+ EG+K
Sbjct: 37 QDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)
HSP 1 Score: 164.851 bits (416), Expect = 1.282e-51
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = 1
Query: 58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFS 348
Q+R LPIAN+ RIMKKA+P+ KI+K+AKET+QECVSEFISFIT EAS+KCQ+EKRKTINGDDL+WAM TLGFE+Y EPLKVYL KYRE+EGD +
Sbjct: 32 QDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLT 128
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)
HSP 1 Score: 164.081 bits (414), Expect = 2.721e-51
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = 1
Query: 58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFS 348
Q+R LPIAN+ RIMKKA+P+ KI+K+AKET+QECVSEFISFIT EAS+KCQ+EKRKTINGDDL+WAM TLGFE+Y EPLKVYL KYRE+EGD +
Sbjct: 39 QDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLT 135
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=NFYB10 PE=1 SV=1)
HSP 1 Score: 162.925 bits (411), Expect = 7.408e-51
Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 1
Query: 58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGD 336
Q+R LPIAN+ RIMK+ LP KI+K+AKETMQECVSEFISF+T EAS+KCQ+EKRKTINGDDL+WAM TLGFE+Y +PLKVYL++YRE+EGD
Sbjct: 30 QDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD 122
BLAST of Psat4g002840.1 vs. DB:Swiss
Match:
NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1)
HSP 1 Score: 161.77 bits (408), Expect = 1.672e-50
Identity = 74/108 (68.52%), Postives = 90/108 (83.33%), Query Frame = 1
Query: 19 ESGGQASGSKELL--QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGD 336
ESGG S + Q+R LPIAN+ RIMK+ LP+ KI+K+AKE +QECVSEFISF+T EAS+KCQ+EKRKTINGDDL+WAM TLGFE+Y EPLKVYL++YRE+EGD
Sbjct: 16 ESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD 123
The following BLAST results are available for this feature:
BLAST of Psat4g002840.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (
BLAST: P. sativum Cameor genome v1a vs. Swissprot )
Total hits: 10
100 200 300 400 500 600 700 800 900 1000 Expect = 7.00e-60 / Id = 70.63 Expect = 1.07e-55 / Id = 68.50 Expect = 1.83e-55 / Id = 70.69 Expect = 7.22e-55 / Id = 75.23 Expect = 1.31e-52 / Id = 65.85 Expect = 3.08e-52 / Id = 77.66 Expect = 1.28e-51 / Id = 75.26 Expect = 2.72e-51 / Id = 75.26 Expect = 7.41e-51 / Id = 75.27 Expect = 1.67e-50 / Id = 68.52 Sequence NFYB3_ARATH NFYB8_ORYSJ NFYBA_ORYSJ NFYB2_ARATH NFYB1_ARATH NFYB7_ARATH NFYB_MAIZE NFYB3_ORYSJ NFYBA_ARATH NFYB8_ARATH
Match Name E-value Identity Description
NFYB3_ARATH 6.996e-60 70.63 Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB8_ORYSJ 1.073e-55 68.50 Nuclear transcription factor Y subunit B-8 OS=Oryz... [more]
NFYBA_ORYSJ 1.828e-55 70.69 Nuclear transcription factor Y subunit B-10 OS=Ory... [more]
NFYB2_ARATH 7.222e-55 75.23 Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB1_ARATH 1.312e-52 65.85 Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB7_ARATH 3.075e-52 77.66 Nuclear transcription factor Y subunit B-7 OS=Arab... [more]
NFYB_MAIZE 1.282e-51 75.26 Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ 2.721e-51 75.26 Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYBA_ARATH 7.408e-51 75.27 Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB8_ARATH 1.672e-50 68.52 Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Psat4g002840.1_Ps_Cameor_v1a ID=Psat4g002840.1_Ps_Cameor_v1a; Name=Psat4g002840.1; organism=Pisum sativum; type=mRNA; length=1022bp ATTAAAGCTAGGTAGCCATGGCAGAATCAGACGATGAGTCAGGTGGTCAA GCATCAGGGAGCAAAGAACTACTACAAGAAAGACTCCTTCCCATAGCAAA CGTTGGAAGGATCATGAAGAAAGCGTTACCATCGAAAGCAAAGATATCAA AGGAAGCAAAAGAAACTATGCAAGAGTGTGTATCAGAGTTCATAAGTTTC ATAACAGGTGAAGCATCTGAGAAGTGTCAGAAAGAGAAGAGGAAAACAAT AAACGGTGATGATCTTGTTTGGGCCATGACTACACTTGGTTTTGAAGAAT ATGCAGAACCTCTTAAGGTTTATCTTCTTAAGTATAGGGAAATTGAAGGA GACAAGAATTTTTCTATGAATATGATTGCTGGTAAAGAGCAGCAAGGTGG TAATACTGATCATCGATTCTTTCAAGGGTGATGATGATAATAATATTTCA AACATAATTTCAGGTTTTTTTTTTAATGTTTGATTGAGGTTTATAGAACT ATACACCAGTTTGTTATTGTTGTTTGAATTTTTGTTGTTGAGATTGAAAT ATACACATTATTCATAGTGGTTGTGATTATATCTCAGAAAATATATATTA TAGTGATGATTTGTATTTTTGTTGTTGAGATTGAGATATATATTCATACA TATTAATTTTGGTGATTGAGCAGGAAATAAGTTTGGTAAAAGTTTTGTTT TGATCCAAACAAATGAAGAAAATGGTAAAACATTTGAGTTACTTCGAAGC TTAATTGCTTCTTTTTACTGTCACTGATTAGTACCATATCAACTATAAAT GAATGAACTAAACATTGAATATATCAAAGAAATGACTCGTATAGCTTCAT ATGATTTAGAGTGACTATCGAACTCTCCATAAACTCAACATAAAATTTGA CTTGAAAGACCCTAAAATTGAGTGGCTAAATTTCCCTAATTGGTAACTGC TCCACAAAAGAGTCACAATAATTGAGTGGCTACATTTCCTAGTAAAATAT ATAAATGGATAAGATACAGCAT back to top protein sequence of Psat4g002840.1_Ps_Cameor_v1a
>Psat4g002840.1_Ps_Cameor_v1a ID=Psat4g002840.1_Ps_Cameor_v1a; Name=Psat4g002840.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=138bp MAESDDESGGQASGSKELLQERLLPIANVGRIMKKALPSKAKISKEAKET MQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLK VYLLKYREIEGDKNFSMNMIAGKEQQGGNTDHRFFQG* back to top mRNA from alignment at chr4LG4:3484470..3485491-
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g002840.1_Ps_Cameor_v1a ID=Psat4g002840.1_Ps_Cameor_v1a; Name=Psat4g002840.1; organism=Pisum sativum; type=mRNA; length=1022bp; location=Sequence derived from: chr4LG4:3484470..3485491- (Pisum sativumATTAAAGCTAGGTAGCC ATGGCAGAATCAGACGATGAGTCAGGTGGTCAA
GCATCAGGGAGCAAAGAACTACTACAAGAAAGACTCCTTCCCATAGCAAA
CGTTGGAAGGATCATGAAGAAAGCGTTACCATCGAAAGCAAAGATATCAA
AGGAAGCAAAAGAAACTATGCAAGAGTGTGTATCAGAGTTCATAAGTTTC
ATAACAGGTGAAGCATCTGAGAAGTGTCAGAAAGAGAAGAGGAAAACAAT
AAACGGTGATGATCTTGTTTGGGCCATGACTACACTTGGTTTTGAAGAAT
ATGCAGAACCTCTTAAGGTTTATCTTCTTAAGTATAGGGAAATTGAAGGA
GACAAGAATTTTTCTATGAATATGATTGCTGGTAAAGAGCAGCAAGGTGG
TAATACTGATCATCGATTCTTTCAAGGGTGA TGATGATAATAATATTTCA
AACATAATTTCAGGTTTTTTTTTTAATGTTTGATTGAGGTTTATAGAACT
ATACACCAGTTTGTTATTGTTGTTTGAATTTTTGTTGTTGAGATTGAAAT
ATACACATTATTCATAGTGGTTGTGATTATATCTCAGAAAATATATATTA
TAGTGATGATTTGTATTTTTGTTGTTGAGATTGAGATATATATTCATACA
TATTAATTTTGGTGATTGAGCAGGAAATAAGTTTGGTAAAAGTTTTGTTT
TGATCCAAACAAATGAAGAAAATGGTAAAACATTTGAGTTACTTCGAAGC
TTAATTGCTTCTTTTTACTGTCACTGATTAGTACCATATCAACTATAAAT
GAATGAACTAAACATTGAATATATCAAAGAAATGACTCGTATAGCTTCAT
ATGATTTAGAGTGACTATCGAACTCTCCATAAACTCAACATAAAATTTGA
CTTGAAAGACCCTAAAATTGAGTGGCTAAATTTCCCTAATTGGTAACTGC
TCCACAAAAGAGTCACAATAATTGAGTGGCTACATTTCCTAGTAAAATAT
ATAAATGGATAAGATACAGCAT back to top Coding sequence (CDS) from alignment at chr4LG4:3484470..3485491-
>Psat4g002840.1_Ps_Cameor_v1a ID=Psat4g002840.1_Ps_Cameor_v1a; Name=Psat4g002840.1; organism=Pisum sativum; type=CDS; length=828bp; location=Sequence derived from: chr4LG4:3484470..3485491- (Pisum sativum ATGGCAGAATCAGACGATGAGTCAGGTGGTCAAGCATCAGGGAGCAAAGA ACTACTACAAGAAAGACTCCTTCCCATAGCAAACGTTGGAAGGATCATGA AGAAAGCGTTACCATCGAAAGCAAAGATATCAAAGGAAGCAAAAGAAACT ATGCAAGAGTGTGTATCAGAGTTCATAAGTTTCATAACAGGTGAAGCATC TGAGAAGTGTCAGAAAGAGAAGAGGAAAACAATAAACGGTGATGATCTTG TTTGGGCCATGACTACACTTGGTTTTGAAGAATATGCAGAACCTCTTAAG GTTTATCTTCTTAAGTATAGGGAAATTGAAGGAGACAAGAATTTTTCTAT GAATATGATTGCTGGTAAAGAGCAGCAAGGTGGTAATACTGATCATCGAT TCTTTCAAGGGTGAATGGCAGAATCAGACGATGAGTCAGGTGGTCAAGCA TCAGGGAGCAAAGAACTACTACAAGAAAGACTCCTTCCCATAGCAAACGT TGGAAGGATCATGAAGAAAGCGTTACCATCGAAAGCAAAGATATCAAAGG AAGCAAAAGAAACTATGCAAGAGTGTGTATCAGAGTTCATAAGTTTCATA ACAGGTGAAGCATCTGAGAAGTGTCAGAAAGAGAAGAGGAAAACAATAAA CGGTGATGATCTTGTTTGGGCCATGACTACACTTGGTTTTGAAGAATATG CAGAACCTCTTAAGGTTTATCTTCTTAAGTATAGGGAAATTGAAGGAGAC AAGAATTTTTCTATGAATATGATTGCTGGTAAAGAGCAGCAAGGTGGTAA TACTGATCATCGATTCTTTCAAGGGTGA back to top