Psat4g002840.1

Transcript Overview
NamePsat4g002840.1
Unique NamePsat4g002840.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length1022
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4LG4supercontigchr4LG4:3484470..3485491 -Pisum sativum Cameor genome v1an/a
chr4LG4supercontigchr4LG4:3484470..3485491 -Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsL042Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capsL045Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpsL806Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipsL746Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipsL778Cicer arietinum ICC 4958 genome v2Cicer arietinum
capsL617Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capsL621Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
psvuR303Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR308Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR361Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR354Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR367Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR377Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpsL068Cajanus cajan Asha genome v1.0Cajanus cajan
ccpsL096Cajanus cajan Asha genome v1.0Cajanus cajan
ccpsL371Cajanus cajan Asha genome v1.0Cajanus cajan
anpsL0206Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0378Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0690Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspsL051Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspsL205Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspsL206Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pszwsR306Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifR396Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR271Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR307Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR383Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvrvR260Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR261Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR298Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR302Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvuaR289Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR359Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvssR361Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR296Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvuaR315Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canpsL617Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpsL622Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpsL137Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL140Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL244Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpsL619Cicer arietinum
carpsL629Cicer arietinum
ccapsL193Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL201Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL713Cajanus cajan cv. Asha genome v2.0Cajanus cajan
psvumR287Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR291Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR398Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR401Vigna umbellata FF25 genome v1.0Vigna umbellata
psvvaR323Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR329Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR390Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR279Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR284Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR360Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR363Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR377Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR380Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvunR282Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR368Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pspvfR389Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_004507536.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan01g327100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_05G00781.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-KK1_026049Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_31760Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_22034.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigst.01G379200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
XM_058897207.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_014652192.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr03.1125Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.6g002880.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun03g438400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.003G086800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
XM_058872097.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_014662428.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan09g201100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Va09G054000.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
PvulFLAVERTChr03.505Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr06.1001620Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigst.05G075700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_01G04094.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cc_v2.0_28164.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_20238Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Tiffany.R1.6g002120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigan.05G095000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va01G099940.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigan.01G539800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Ca_21988.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
jg48484.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_21894.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_07906Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Psat04G0007800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat4g002840Psat4g002840_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002840.1Psat4g002840.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat4g002840.1_Ps_Cameor_v1aPsat4g002840.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002840.1.five_prime_utr1Psat4g002840.1.five_prime_utr1_Ps_Cameor_v1aPisum sativumfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002840.1.cds1Psat4g002840.1.cds1_Ps_Cameor_v1aPisum sativumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002840.1.exon1Psat4g002840.1.exon1_Ps_Cameor_v1aPisum sativumexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002840.1.three_prime_utr1Psat4g002840.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 6.996e-60
Identity = 89/126 (70.63%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 MAESDDESGGQASGSKELL--QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFSMNMIAGKE 372
            MA+SD++SGG   G       Q+R LPIANV RIMKKALP+ AKISK+AKET+QECVSEFISFITGEAS+KCQ+EKRKTINGDDL+WAMTTLGFE+Y EPLKVYL KYRE+EG+K  +      KE
Sbjct:    1 MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKE 126
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYB8_ORYSJ (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.073e-55
Identity = 87/127 (68.50%), Postives = 103/127 (81.10%), Query Frame = 1 
Query:    1 MAESDDESGGQ---ASG--SKELLQERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFSMNMIAG 366
            M +SD++SGG    A G  S    Q+R LPIANV RIMKKALP+ AKISK+AKET+QECVSEFISFITGEAS+KCQ+EKRKTINGDDL+WAMTTLGFE+Y +PLK YL K+REIEG++  +    AG
Sbjct:    1 MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAAASTTGAG 127
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYBA_ORYSJ (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.828e-55
Identity = 82/116 (70.69%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:    1 MAESDDESGGQASG---SKELLQERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDK 339
            M +SD+ESGG ++    +    Q+R LPIANV RIMK+ALP+ AKISK+AKET+QECVSEFISFITGEAS+KCQ+EKRKTINGDDL+WAMTTLGFE+Y +PLK+YL K+RE+EG+K
Sbjct:    1 MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.222e-55
Identity = 82/109 (75.23%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:   58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFSMNMIAGKEQQGG 384
            Q+R LPIANV RIMKKALP+ AKISK+AKETMQECVSEFISF+TGEAS+KCQKEKRKTINGDDL+WAMTTLGFE+Y EPLKVYL ++REIEG++        G+ Q GG
Sbjct:   28 QDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG-----LGRPQTGG 131
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.312e-52
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 1 
Query:   25 GGQASGSKELLQERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFSMNMIAGKEQQGGNTD 393
            GG++ GS    Q+R LPIAN+ RIMKKALP   KI K+AK+T+QECVSEFISFIT EAS+KCQKEKRKT+NGDDL+WAM TLGFE+Y EPLK+YL +YRE+EGD     N  +GK   G N D
Sbjct:   12 GGESGGSVRE-QDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD-----NKGSGKSGDGSNRD 128
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.075e-52
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:   58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDK 339
            Q+R LPIANVGRIMKK LP   KISK+AKET+QECVSEFISF+TGEAS+KCQ+EKRKTINGDD++WA+TTLGFE+Y  PLKVYL KYR+ EG+K
Sbjct:   37 QDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.282e-51
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:   58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFS 348
            Q+R LPIAN+ RIMKKA+P+  KI+K+AKET+QECVSEFISFIT EAS+KCQ+EKRKTINGDDL+WAM TLGFE+Y EPLKVYL KYRE+EGD   +
Sbjct:   32 QDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLT 128
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 2.721e-51
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:   58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGDKNFS 348
            Q+R LPIAN+ RIMKKA+P+  KI+K+AKET+QECVSEFISFIT EAS+KCQ+EKRKTINGDDL+WAM TLGFE+Y EPLKVYL KYRE+EGD   +
Sbjct:   39 QDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLT 135
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.408e-51
Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:   58 QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGD 336
            Q+R LPIAN+ RIMK+ LP   KI+K+AKETMQECVSEFISF+T EAS+KCQ+EKRKTINGDDL+WAM TLGFE+Y +PLKVYL++YRE+EGD
Sbjct:   30 QDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD 122
[Close]
BLAST of Psat4g002840.1 vs. DB:Swiss
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.672e-50
Identity = 74/108 (68.52%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:   19 ESGGQASGSKELL--QERLLPIANVGRIMKKALPSKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLLKYREIEGD 336
            ESGG  S     +  Q+R LPIAN+ RIMK+ LP+  KI+K+AKE +QECVSEFISF+T EAS+KCQ+EKRKTINGDDL+WAM TLGFE+Y EPLKVYL++YRE+EGD
Sbjct:   16 ESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD 123
The following BLAST results are available for this feature:
BLAST of Psat4g002840.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
NFYB3_ARATH6.996e-6070.63Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB8_ORYSJ1.073e-5568.50Nuclear transcription factor Y subunit B-8 OS=Oryz... [more]
NFYBA_ORYSJ1.828e-5570.69Nuclear transcription factor Y subunit B-10 OS=Ory... [more]
NFYB2_ARATH7.222e-5575.23Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB1_ARATH1.312e-5265.85Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB7_ARATH3.075e-5277.66Nuclear transcription factor Y subunit B-7 OS=Arab... [more]
NFYB_MAIZE1.282e-5175.26Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ2.721e-5175.26Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYBA_ARATH7.408e-5175.27Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB8_ARATH1.672e-5068.52Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
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InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 51..69
score: 50.24
coord: 89..107
score: 43.66
coord: 70..88
score: 34.33
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 23..87
e-value: 2.7E-28
score: 98.1
IPR009072Histone-foldGENE3D1.10.20.10coord: 14..133
e-value: 1.3E-42
score: 146.9
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 20..115
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 54..70

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat4g002840.1_Ps_Cameor_v1a ID=Psat4g002840.1_Ps_Cameor_v1a; Name=Psat4g002840.1; organism=Pisum sativum; type=mRNA; length=1022bp
ATTAAAGCTAGGTAGCCATGGCAGAATCAGACGATGAGTCAGGTGGTCAA
GCATCAGGGAGCAAAGAACTACTACAAGAAAGACTCCTTCCCATAGCAAA
CGTTGGAAGGATCATGAAGAAAGCGTTACCATCGAAAGCAAAGATATCAA
AGGAAGCAAAAGAAACTATGCAAGAGTGTGTATCAGAGTTCATAAGTTTC
ATAACAGGTGAAGCATCTGAGAAGTGTCAGAAAGAGAAGAGGAAAACAAT
AAACGGTGATGATCTTGTTTGGGCCATGACTACACTTGGTTTTGAAGAAT
ATGCAGAACCTCTTAAGGTTTATCTTCTTAAGTATAGGGAAATTGAAGGA
GACAAGAATTTTTCTATGAATATGATTGCTGGTAAAGAGCAGCAAGGTGG
TAATACTGATCATCGATTCTTTCAAGGGTGATGATGATAATAATATTTCA
AACATAATTTCAGGTTTTTTTTTTAATGTTTGATTGAGGTTTATAGAACT
ATACACCAGTTTGTTATTGTTGTTTGAATTTTTGTTGTTGAGATTGAAAT
ATACACATTATTCATAGTGGTTGTGATTATATCTCAGAAAATATATATTA
TAGTGATGATTTGTATTTTTGTTGTTGAGATTGAGATATATATTCATACA
TATTAATTTTGGTGATTGAGCAGGAAATAAGTTTGGTAAAAGTTTTGTTT
TGATCCAAACAAATGAAGAAAATGGTAAAACATTTGAGTTACTTCGAAGC
TTAATTGCTTCTTTTTACTGTCACTGATTAGTACCATATCAACTATAAAT
GAATGAACTAAACATTGAATATATCAAAGAAATGACTCGTATAGCTTCAT
ATGATTTAGAGTGACTATCGAACTCTCCATAAACTCAACATAAAATTTGA
CTTGAAAGACCCTAAAATTGAGTGGCTAAATTTCCCTAATTGGTAACTGC
TCCACAAAAGAGTCACAATAATTGAGTGGCTACATTTCCTAGTAAAATAT
ATAAATGGATAAGATACAGCAT
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protein sequence of Psat4g002840.1_Ps_Cameor_v1a

>Psat4g002840.1_Ps_Cameor_v1a ID=Psat4g002840.1_Ps_Cameor_v1a; Name=Psat4g002840.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=138bp
MAESDDESGGQASGSKELLQERLLPIANVGRIMKKALPSKAKISKEAKET
MQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLK
VYLLKYREIEGDKNFSMNMIAGKEQQGGNTDHRFFQG*
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mRNA from alignment at chr4LG4:3484470..3485491-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g002840.1_Ps_Cameor_v1a ID=Psat4g002840.1_Ps_Cameor_v1a; Name=Psat4g002840.1; organism=Pisum sativum; type=mRNA; length=1022bp; location=Sequence derived from: chr4LG4:3484470..3485491- (Pisum sativum
ATTAAAGCTAGGTAGCCATGGCAGAATCAGACGATGAGTCAGGTGGTCAA
GCATCAGGGAGCAAAGAACTACTACAAGAAAGACTCCTTCCCATAGCAAA
CGTTGGAAGGATCATGAAGAAAGCGTTACCATCGAAAGCAAAGATATCAA
AGGAAGCAAAAGAAACTATGCAAGAGTGTGTATCAGAGTTCATAAGTTTC
ATAACAGGTGAAGCATCTGAGAAGTGTCAGAAAGAGAAGAGGAAAACAAT
AAACGGTGATGATCTTGTTTGGGCCATGACTACACTTGGTTTTGAAGAAT
ATGCAGAACCTCTTAAGGTTTATCTTCTTAAGTATAGGGAAATTGAAGGA
GACAAGAATTTTTCTATGAATATGATTGCTGGTAAAGAGCAGCAAGGTGG
TAATACTGATCATCGATTCTTTCAAGGGTGATGATGATAATAATATTTCA
AACATAATTTCAGGTTTTTTTTTTAATGTTTGATTGAGGTTTATAGAACT
ATACACCAGTTTGTTATTGTTGTTTGAATTTTTGTTGTTGAGATTGAAAT
ATACACATTATTCATAGTGGTTGTGATTATATCTCAGAAAATATATATTA
TAGTGATGATTTGTATTTTTGTTGTTGAGATTGAGATATATATTCATACA
TATTAATTTTGGTGATTGAGCAGGAAATAAGTTTGGTAAAAGTTTTGTTT
TGATCCAAACAAATGAAGAAAATGGTAAAACATTTGAGTTACTTCGAAGC
TTAATTGCTTCTTTTTACTGTCACTGATTAGTACCATATCAACTATAAAT
GAATGAACTAAACATTGAATATATCAAAGAAATGACTCGTATAGCTTCAT
ATGATTTAGAGTGACTATCGAACTCTCCATAAACTCAACATAAAATTTGA
CTTGAAAGACCCTAAAATTGAGTGGCTAAATTTCCCTAATTGGTAACTGC
TCCACAAAAGAGTCACAATAATTGAGTGGCTACATTTCCTAGTAAAATAT
ATAAATGGATAAGATACAGCAT
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Coding sequence (CDS) from alignment at chr4LG4:3484470..3485491-

>Psat4g002840.1_Ps_Cameor_v1a ID=Psat4g002840.1_Ps_Cameor_v1a; Name=Psat4g002840.1; organism=Pisum sativum; type=CDS; length=828bp; location=Sequence derived from: chr4LG4:3484470..3485491- (Pisum sativum
ATGGCAGAATCAGACGATGAGTCAGGTGGTCAAGCATCAGGGAGCAAAGA
ACTACTACAAGAAAGACTCCTTCCCATAGCAAACGTTGGAAGGATCATGA
AGAAAGCGTTACCATCGAAAGCAAAGATATCAAAGGAAGCAAAAGAAACT
ATGCAAGAGTGTGTATCAGAGTTCATAAGTTTCATAACAGGTGAAGCATC
TGAGAAGTGTCAGAAAGAGAAGAGGAAAACAATAAACGGTGATGATCTTG
TTTGGGCCATGACTACACTTGGTTTTGAAGAATATGCAGAACCTCTTAAG
GTTTATCTTCTTAAGTATAGGGAAATTGAAGGAGACAAGAATTTTTCTAT
GAATATGATTGCTGGTAAAGAGCAGCAAGGTGGTAATACTGATCATCGAT
TCTTTCAAGGGTGAATGGCAGAATCAGACGATGAGTCAGGTGGTCAAGCA
TCAGGGAGCAAAGAACTACTACAAGAAAGACTCCTTCCCATAGCAAACGT
TGGAAGGATCATGAAGAAAGCGTTACCATCGAAAGCAAAGATATCAAAGG
AAGCAAAAGAAACTATGCAAGAGTGTGTATCAGAGTTCATAAGTTTCATA
ACAGGTGAAGCATCTGAGAAGTGTCAGAAAGAGAAGAGGAAAACAATAAA
CGGTGATGATCTTGTTTGGGCCATGACTACACTTGGTTTTGAAGAATATG
CAGAACCTCTTAAGGTTTATCTTCTTAAGTATAGGGAAATTGAAGGAGAC
AAGAATTTTTCTATGAATATGATTGCTGGTAAAGAGCAGCAAGGTGGTAA
TACTGATCATCGATTCTTTCAAGGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
IPR003956Transcrpt_fac_NFYB/HAP3_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription