Psat4g002880.1

Transcript Overview
NamePsat4g002880.1
Unique NamePsat4g002880.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length2068
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4LG4supercontigchr4LG4:3542546..3544613 +Pisum sativum Cameor genome v1an/a
chr4LG4supercontigchr4LG4:3542546..3544613 +Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsL042Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capsL045Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpsL806Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipsL746Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipsL778Cicer arietinum ICC 4958 genome v2Cicer arietinum
capsL617Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capsL621Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
psvuR303Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR308Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR361Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR354Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR367Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR377Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpsL068Cajanus cajan Asha genome v1.0Cajanus cajan
ccpsL096Cajanus cajan Asha genome v1.0Cajanus cajan
ccpsL371Cajanus cajan Asha genome v1.0Cajanus cajan
anpsL0206Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0378Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpsL0690Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspsL051Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspsL205Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspsL206Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pszwsR306Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifR396Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR271Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR307Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR383Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvrvR260Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR261Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR298Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR302Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvuaR289Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR359Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvssR361Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR296Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvuaR315Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canpsL617Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpsL622Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpsL137Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL140Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL244Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpsL619Cicer arietinum
carpsL629Cicer arietinum
ccapsL193Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL201Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL713Cajanus cajan cv. Asha genome v2.0Cajanus cajan
psvumR287Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR291Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR398Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR401Vigna umbellata FF25 genome v1.0Vigna umbellata
psvvaR323Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR329Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR390Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR279Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR284Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR360Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR363Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR377Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR380Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvunR282Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR368Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pspvfR389Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.01G539900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Ca_21895.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_31759Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg48485.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.003G086700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_026050Cajanus cajan Asha genome v1.0Cajanus cajan
Va01G099950.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014652690.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Cc_v2.0_28163.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cr_22033.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Hedin2.R1.6g002960.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.6g002200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_20237Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan01g327000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_01G04095.1Vigna umbellata FF25 genome v1.0Vigna umbellata
PvulFLAVERTChr03.1000526Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigst.01G379300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
evm.model.Chr03.1124Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
XM_058897223.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_004507537.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun03g438500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Psat04G0007900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat4g002880Psat4g002880_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002880.1Psat4g002880.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat4g002880.1_Ps_Cameor_v1aPsat4g002880.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002880.1.cds1Psat4g002880.1.cds1_Ps_Cameor_v1aPisum sativumCDS
Psat4g002880.1.cds2Psat4g002880.1.cds2_Ps_Cameor_v1aPisum sativumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g002880.1.exon1Psat4g002880.1.exon1_Ps_Cameor_v1aPisum sativumexon
Psat4g002880.1.exon2Psat4g002880.1.exon2_Ps_Cameor_v1aPisum sativumexon


Homology
The following BLAST results are available for this feature:
BLAST of Psat4g002880.1 vs.
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF01190Pollen_Ole_e_Icoord: 79..151
e-value: 1.2E-8
score: 35.2

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1; organism=Pisum sativum; type=mRNA; length=2068bp
ATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCTCTC
TTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCATCAC
AAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGAAAA
GAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGTTCT
TATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAATAC
CAGGTATATACATACATATCTCGAATTAATTCTATTTAAATAACAAGTTT
AATGTGTTATTAATATTCTTTAGTGATTTCAAGATTATTAGTATCACATT
AATATATAAATATTTACAATAATTATATATTGTTGTTGTTGTTGTTCCAT
TGTTTGGTGACAATAGCTTGCTTTCACATTTAGGTGAAATTTCTATTTCG
GAAAATAATATAAGTTGATTCAAATTTACTACTAAATGACATTGAATATT
ATTGATAAGATGTCGTTCTTGATAAATAAAAATTGACAATGATTTTTAAC
CTTCCTGTCAATGCATGGTAAGTAGGGAGAAGCAAATAAAAAGTAGTAAG
TCACATTATGTAATGAAAGATTTATTACTATATGAGAACTAATTAAACAT
GAATAACACACACACACAAACGCATATAACTGCAATTTGTGGTTTTTTAT
TTTATGATGTGGAGAATTTTTTTCAGTTGACAACAATGTTTAGTCCCCTA
CATTGGTGAACTACCATATATATATATATAACCCTCAAATAAGAGATAAA
AAAAATCTTGAAATTGTCAATTTTCAATCATTCAAGTTGAATTGTACTTT
ATATTTAAATATTTTAAATTAATCTTTCATTTTAAAATTAATTGTCAAAT
TAATTATATAGTTTTCAAAAGTGCTGGTATTTAAGGATATACTTGATCAT
ATTTAACTTTAGGGTTTAGTTTGAAAGAGGGTAAGGTCAAGATAGACTAA
TAAAATGGCCAGTGATTAAAATGTTGGGGACTCAATATATATTTTAGTTC
AATGACTCAATATATATTTTAGTTCAATGACTAATATGATAACATTCTAC
GATTTTAGATATCAAAATTTAGGGGTGTTCATGCCGGACTGCAAACCTAA
TTTAGGGGTGTTCATGCCGGACTGCAAACCTAGTGATCGAAACTGAATAA
ACTCATAAATCATCCGAAAACCTATTGATCGAAACTGAATAAACTCATAA
ATTATCCGAACTTATTCATTTACGAATATATCAAATCCGACAAATCCCCA
TCATTATCCAACCAATTGATTTGACATTAGTAGTTTTTTGTTTTTTATTA
TTATTTTAAATCTAATTAGAGATTTAATCACATAAATAATCTTTTTATCA
AATCACATTCTAAATCATTATGAAAAAAACTAATTGTGTCAAATTATGAG
TTACCTTAAGATTTTAATATAATATCTTTAAACTTTTCTATGTTTTTTAA
TTCATGTAAAATGTTCAAAATCATCTTATAATTTAGGATGAAGGGAGTAT
TTCATTGTTTGCCAATGAAAATGAGAGAATTCAAATCAATTTCTTAACGA
AGTCTTTGAAATTTGACTCCAACAACAGGCATTCAATATTTTCTCAACAT
TTTCAAAAAAAAACATGTGAATGTTCATTTGCATCCAAATATGGCTAATT
TAAGATTAACTAATGCAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCAT
GGCAGTGAAAGAAAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGA
GTATGGAGATTTTATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCA
ACTTGGAAAAAATATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCA
CTTTGCAGACCAACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCT
CTCTTCCATTGGGAATGGCATCCGCACCTATGACACCGGAAACATAAGGA
TCCAGCATTCAACTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATA
GGGGAAATTAAGGAGTAG
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protein sequence of Psat4g002880.1_Ps_Cameor_v1a

>Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=201bp
MSYFHANNVLVMLFFLSLLSLLHNIVTGFSVSSQVEQYDHSLLDSLSSRK
EVVEIAGYGEEKLSTVLITGSLHCHHHPHAWPIPGALVAVNCQSHGSERK
GKSMVAKGVTDEYGDFMVDLPSYLHAIPNLEKICRVKVHKIPKGSLCRPT
RHVKKHNGLFKLSSIGNGIRTYDTGNIRIQHSTSEPRRAAPRKDIGEIKE
*
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mRNA from alignment at chr4LG4:3542546..3544613+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1; organism=Pisum sativum; type=mRNA; length=2068bp; location=Sequence derived from: chr4LG4:3542546..3544613+ (Pisum sativum
ATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCTCTC
TTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCATCAC
AAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGAAAA
GAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGTTCT
TATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAATAC
CAGGTATATACATACATATCTCGAATTAATTCTATTTAAATAACAAGTTT
AATGTGTTATTAATATTCTTTAGTGATTTCAAGATTATTAGTATCACATT
AATATATAAATATTTACAATAATTATATATTGTTGTTGTTGTTGTTCCAT
TGTTTGGTGACAATAGCTTGCTTTCACATTTAGGTGAAATTTCTATTTCG
GAAAATAATATAAGTTGATTCAAATTTACTACTAAATGACATTGAATATT
ATTGATAAGATGTCGTTCTTGATAAATAAAAATTGACAATGATTTTTAAC
CTTCCTGTCAATGCATGGTAAGTAGGGAGAAGCAAATAAAAAGTAGTAAG
TCACATTATGTAATGAAAGATTTATTACTATATGAGAACTAATTAAACAT
GAATAACACACACACACAAACGCATATAACTGCAATTTGTGGTTTTTTAT
TTTATGATGTGGAGAATTTTTTTCAGTTGACAACAATGTTTAGTCCCCTA
CATTGGTGAACTACCATATATATATATATAACCCTCAAATAAGAGATAAA
AAAAATCTTGAAATTGTCAATTTTCAATCATTCAAGTTGAATTGTACTTT
ATATTTAAATATTTTAAATTAATCTTTCATTTTAAAATTAATTGTCAAAT
TAATTATATAGTTTTCAAAAGTGCTGGTATTTAAGGATATACTTGATCAT
ATTTAACTTTAGGGTTTAGTTTGAAAGAGGGTAAGGTCAAGATAGACTAA
TAAAATGGCCAGTGATTAAAATGTTGGGGACTCAATATATATTTTAGTTC
AATGACTCAATATATATTTTAGTTCAATGACTAATATGATAACATTCTAC
GATTTTAGATATCAAAATTTAGGGGTGTTCATGCCGGACTGCAAACCTAA
TTTAGGGGTGTTCATGCCGGACTGCAAACCTAGTGATCGAAACTGAATAA
ACTCATAAATCATCCGAAAACCTATTGATCGAAACTGAATAAACTCATAA
ATTATCCGAACTTATTCATTTACGAATATATCAAATCCGACAAATCCCCA
TCATTATCCAACCAATTGATTTGACATTAGTAGTTTTTTGTTTTTTATTA
TTATTTTAAATCTAATTAGAGATTTAATCACATAAATAATCTTTTTATCA
AATCACATTCTAAATCATTATGAAAAAAACTAATTGTGTCAAATTATGAG
TTACCTTAAGATTTTAATATAATATCTTTAAACTTTTCTATGTTTTTTAA
TTCATGTAAAATGTTCAAAATCATCTTATAATTTAGGATGAAGGGAGTAT
TTCATTGTTTGCCAATGAAAATGAGAGAATTCAAATCAATTTCTTAACGA
AGTCTTTGAAATTTGACTCCAACAACAGGCATTCAATATTTTCTCAACAT
TTTCAAAAAAAAACATGTGAATGTTCATTTGCATCCAAATATGGCTAATT
TAAGATTAACTAATGCAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCAT
GGCAGTGAAAGAAAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGA
GTATGGAGATTTTATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCA
ACTTGGAAAAAATATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCA
CTTTGCAGACCAACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCT
CTCTTCCATTGGGAATGGCATCCGCACCTATGACACCGGAAACATAAGGA
TCCAGCATTCAACTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATA
GGGGAAATTAAGGAGTAG
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Coding sequence (CDS) from alignment at chr4LG4:3542546..3544613+

>Psat4g002880.1_Ps_Cameor_v1a ID=Psat4g002880.1_Ps_Cameor_v1a; Name=Psat4g002880.1; organism=Pisum sativum; type=CDS; length=1206bp; location=Sequence derived from: chr4LG4:3542546..3544613+ (Pisum sativum
ATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCTCTC
TTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCATCAC
AAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGAAAA
GAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGTTCT
TATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAATAC
CAGATGAGCTACTTTCATGCCAACAACGTTCTTGTCATGTTGTTTTTCCT
CTCTTTATTATCATTGCTTCATAACATTGTGACTGGATTTTCAGTATCAT
CACAAGTTGAACAATATGATCACTCTCTGTTGGATTCATTATCTAGCAGA
AAAGAAGTGGTGGAAATTGCTGGTTATGGAGAAGAGAAGCTATCAACTGT
TCTTATTACTGGTTCACTTCATTGTCATCATCATCCACATGCATGGCCAA
TACCAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCATGGCAGTGAAAGA
AAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGAGTATGGAGATTT
TATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCAACTTGGAAAAAA
TATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCACTTTGCAGACCA
ACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCTCTCTTCCATTGG
GAATGGCATCCGCACCTATGACACCGGAAACATAAGGATCCAGCATTCAA
CTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATAGGGGAAATTAAG
GAGTAGGAGCTTTGGTTGCTGTCAACTGCCAAAGCCATGGCAGTGAAAGA
AAAGGAAAATCAATGGTGGCAAAAGGTGTAACTGATGAGTATGGAGATTT
TATGGTGGACCTCCCATCCTATCTTCATGCTATTCCCAACTTGGAAAAAA
TATGCAGGGTTAAAGTTCATAAAATTCCAAAGGGATCACTTTGCAGACCA
ACTCGTCATGTAAAAAAACACAATGGACTGTTTAAGCTCTCTTCCATTGG
GAATGGCATCCGCACCTATGACACCGGAAACATAAGGATCCAGCATTCAA
CTTCTGAGCCTCGGCGCGCAGCACCACGCAAAGACATAGGGGAAATTAAG
GAGTAG
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